132 lines
11 KiB
XML
132 lines
11 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
|
|
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
|
|
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
|
|
<r3d:repository>
|
|
<r3d:re3data.orgIdentifier>r3d100011904</r3d:re3data.orgIdentifier>
|
|
<r3d:repositoryName language="eng">Allele Frequency Net Database</r3d:repositoryName>
|
|
<r3d:additionalName language="eng">AFND</r3d:additionalName>
|
|
<r3d:additionalName language="eng">Allele Frequencies in Worldwide populations</r3d:additionalName>
|
|
<r3d:repositoryURL>http://www.allelefrequencies.net/</r3d:repositoryURL>
|
|
<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.2cfr4z</r3d:repositoryIdentifier>
|
|
<r3d:repositoryIdentifier>OMICS_20466</r3d:repositoryIdentifier>
|
|
<r3d:repositoryIdentifier>RRID:SCR_007259</r3d:repositoryIdentifier>
|
|
<r3d:repositoryIdentifier>RRID:nif-0000-30079</r3d:repositoryIdentifier>
|
|
<r3d:description language="eng">The Allele Frequency Net Database (AFND) is a public database which contains frequency information of several immune genes such as Human Leukocyte Antigens (HLA), Killer-cell Immunoglobulin-like Receptors (KIR), Major histocompatibility complex class I chain-related (MIC) genes, and a number of cytokine gene polymorphisms. The Allele Frequency Net Database (AFND) provides a central source, freely available to all, for the storage of allele frequencies from different polymorphic areas in the Human Genome. Users can contribute the results of their work into one common database and can perform database searches on information already available.
|
|
We have currently collected data in allele, haplotype and genotype format. However, the success of this website will depend on you to contribute your data.</r3d:description>
|
|
<r3d:repositoryContact>support@allelefrequencies.net</r3d:repositoryContact>
|
|
<r3d:type>disciplinary</r3d:type>
|
|
<r3d:size updated="2019-01-09">138.757 (HLA), 6.118 (KIR), 4.226 (Cytokine) and 854 (MIC) from 10.529.880 individuals</r3d:size>
|
|
<r3d:startDate>2007</r3d:startDate>
|
|
<r3d:endDate></r3d:endDate>
|
|
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
|
|
<r3d:subject subjectScheme="DFG">1 Humanities and Social Sciences</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20405 Immunology</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20501 Epidemiology, Medical Biometry, Medical Informatics</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
|
|
<r3d:missionStatementURL></r3d:missionStatementURL>
|
|
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
|
|
<r3d:providerType>dataProvider</r3d:providerType>
|
|
<r3d:keyword>Human Leukocyte Antigens - HLA</r3d:keyword>
|
|
<r3d:keyword>Killer-cell Immunoglobulin-like Receptors - KIR</r3d:keyword>
|
|
<r3d:keyword>Major histocompatibility complex class I chain-related - MIC</r3d:keyword>
|
|
<r3d:keyword>cytokine</r3d:keyword>
|
|
<r3d:keyword>histocompatibility</r3d:keyword>
|
|
<r3d:keyword>human genome</r3d:keyword>
|
|
<r3d:keyword>immune genes</r3d:keyword>
|
|
<r3d:keyword>immunogenetics</r3d:keyword>
|
|
<r3d:keyword>population datasets</r3d:keyword>
|
|
<r3d:keyword>transplantation</r3d:keyword>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">EUROSTAM project</r3d:institutionName>
|
|
<r3d:institutionCountry>EEC</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://eurostam.eu/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>https://eurostam.eu/contact/</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">European Commission, Research & Innovation, Seventh Framework Programm - FP7</r3d:institutionName>
|
|
<r3d:institutionCountry>EEC</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>http://ec.europa.eu/research/fp7/index_en.cfm</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate>2015</r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">The Royal Liverpool and Broadgreen University Hospitals NHS Trust</r3d:institutionName>
|
|
<r3d:institutionCountry>GBR</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.rlbuht.nhs.uk/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>Derek.Middleton@rlbuht.nhs.uk</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">University of Liverpool</r3d:institutionName>
|
|
<r3d:institutionCountry>GBR</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.liverpool.ac.uk/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>Andrew.Jones@liv.ac.uk</r3d:institutionContact>
|
|
<r3d:institutionContact>f.galarza@liv.ac.uk</r3d:institutionContact>
|
|
<r3d:institutionContact>louiseyu@liv.ac.uk</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:policy>
|
|
<r3d:policyName>Quality of Data in AFND</r3d:policyName>
|
|
<r3d:policyURL>http://www.allelefrequencies.net/quality.asp</r3d:policyURL>
|
|
</r3d:policy>
|
|
<r3d:databaseAccess>
|
|
<r3d:databaseAccessType>open</r3d:databaseAccessType>
|
|
</r3d:databaseAccess>
|
|
<r3d:dataAccess>
|
|
<r3d:dataAccessType>open</r3d:dataAccessType>
|
|
</r3d:dataAccess>
|
|
<r3d:dataLicense>
|
|
<r3d:dataLicenseName>Public Domain</r3d:dataLicenseName>
|
|
<r3d:dataLicenseURL>http://www.allelefrequencies.net/faqs.asp</r3d:dataLicenseURL>
|
|
</r3d:dataLicense>
|
|
<r3d:dataUpload>
|
|
<r3d:dataUploadType>restricted</r3d:dataUploadType>
|
|
<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
|
|
</r3d:dataUpload>
|
|
<r3d:dataUploadLicense>
|
|
<r3d:dataUploadLicenseName>Submission of primary genotyping data</r3d:dataUploadLicenseName>
|
|
<r3d:dataUploadLicenseURL>http://www.allelefrequencies.net/submit/Default.aspx</r3d:dataUploadLicenseURL>
|
|
</r3d:dataUploadLicense>
|
|
<r3d:versioning>yes</r3d:versioning>
|
|
<r3d:pidSystem>none</r3d:pidSystem>
|
|
<r3d:citationGuidelineURL>http://www.allelefrequencies.net/publications.asp</r3d:citationGuidelineURL>
|
|
<r3d:enhancedPublication>yes</r3d:enhancedPublication>
|
|
<r3d:qualityManagement>yes</r3d:qualityManagement>
|
|
<r3d:metadataStandard>
|
|
<r3d:metadataStandardName metadataStandardScheme="DCC">other</r3d:metadataStandardName>
|
|
<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/abcd-access-biological-collection-data</r3d:metadataStandardURL>
|
|
</r3d:metadataStandard>
|
|
<r3d:metadataStandard>
|
|
<r3d:metadataStandardName metadataStandardScheme="DCC">other</r3d:metadataStandardName>
|
|
<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/abcd-access-biological-collection-data</r3d:metadataStandardURL>
|
|
</r3d:metadataStandard>
|
|
<r3d:metadataStandard>
|
|
<r3d:metadataStandardName metadataStandardScheme="DCC">other</r3d:metadataStandardName>
|
|
<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/abcd-access-biological-collection-data</r3d:metadataStandardURL>
|
|
</r3d:metadataStandard>
|
|
<r3d:remarks>is covered by Elsevier.</r3d:remarks>
|
|
<r3d:entryDate>2015-12-22</r3d:entryDate>
|
|
<r3d:lastUpdate>2021-09-02</r3d:lastUpdate>
|
|
</r3d:repository>
|
|
</r3d:re3data> |