123 lines
9.7 KiB
XML
123 lines
9.7 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100011833</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">Harvard Medical School, Library of Integrated Network-Based Cellular Signatures Database</r3d:repositoryName>
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<r3d:additionalName language="eng">HMS, LINCS database</r3d:additionalName>
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<r3d:repositoryURL>https://lincs.hms.harvard.edu/db/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>RRID:SCR_006454</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nlx_156062</r3d:repositoryIdentifier>
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<r3d:description language="eng">The Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.</r3d:description>
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<r3d:repositoryContact>https://lincs.hms.harvard.edu/about/people/</r3d:repositoryContact>
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<r3d:repositoryContact>lincs-feedback@hms.harvard.edu</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated="2020-10-28">350 datasets</r3d:size>
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<r3d:startDate>2010</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20103 Cell Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20104 Structural Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:missionStatementURL>https://commonfund.nih.gov/LINCS/overview</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>antibodies</r3d:keyword>
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<r3d:keyword>biochemistry</r3d:keyword>
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<r3d:keyword>biology</r3d:keyword>
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<r3d:keyword>cells</r3d:keyword>
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<r3d:keyword>experimental reagents</r3d:keyword>
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<r3d:keyword>molecular signatures</r3d:keyword>
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<r3d:keyword>proteins</r3d:keyword>
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<r3d:keyword>small molecules reagents</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Big Data to Knowledge - Library of Integrated Network-based Cellular Signatures, Data Coordination and Integration Center</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">BD2K - LINCS DCIC</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://lincs-dcic.org/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>support@lincs-dcic.org</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Harvard Medical School</r3d:institutionName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://hms.harvard.edu/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:03wevmz92</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://hms.harvard.edu/about-hms/contact-harvard-medical-school</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">National Institutes of Health, Library of Integrated Network-based Cellular Signatures Program</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NIH, LINCS Program</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://lincsproject.org/</r3d:institutionURL>
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<r3d:institutionIdentifier>https://fairsharing.org/3532</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>NIH Genomic Data Sharing Policy</r3d:policyName>
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<r3d:policyURL>https://osp.od.nih.gov/scientific-sharing/genomic-data-sharing/</r3d:policyURL>
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</r3d:policy>
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<r3d:policy>
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<r3d:policyName>Terms of use</r3d:policyName>
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<r3d:policyURL>https://lincs.hms.harvard.edu/terms/</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>restricted</r3d:dataAccessType>
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<r3d:dataAccessRestriction>other</r3d:dataAccessRestriction>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://lincsproject.org/LINCS/data/release-policy</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>closed</r3d:dataUploadType>
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</r3d:dataUpload>
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<r3d:software>
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<r3d:softwareName>unknown</r3d:softwareName>
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</r3d:software>
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<r3d:versioning></r3d:versioning>
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<r3d:pidSystem>none</r3d:pidSystem>
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<r3d:citationGuidelineURL>https://lincsproject.org/LINCS/data/release-policy</r3d:citationGuidelineURL>
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<r3d:aidSystem>none</r3d:aidSystem>
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<r3d:enhancedPublication>yes</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:metadataStandard>
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<r3d:metadataStandardName metadataStandardScheme="DCC">ISA-Tab</r3d:metadataStandardName>
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<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/isa-tab</r3d:metadataStandardURL>
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</r3d:metadataStandard>
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<r3d:metadataStandard>
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<r3d:metadataStandardName metadataStandardScheme="DCC">MIBBI - Minimum Information for Biological and Biomedical Investigations</r3d:metadataStandardName>
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<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/mibbi-minimum-information-biological-and-biomedical-investigations</r3d:metadataStandardURL>
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</r3d:metadataStandard>
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<r3d:syndication syndicationType="RSS">https://lincs.hms.harvard.edu/feed/</r3d:syndication>
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<r3d:remarks>LINCS database is covered by Thomson Reuters Data Citation Index.
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LINCS database datasets are part of LINCS Data Portal datasets: http://lincsportal.ccs.miami.edu/datasets/</r3d:remarks>
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<r3d:entryDate>2016-03-10</r3d:entryDate>
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<r3d:lastUpdate>2022-05-05</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |