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RegistriesOverlap/data/re3dataRecords/r3d100011596.xml

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<?xml version="1.0" encoding="utf-8"?>
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
<r3d:repository>
<r3d:re3data.orgIdentifier>r3d100011596</r3d:re3data.orgIdentifier>
<r3d:repositoryName language="eng">PhenoGen Informatics</r3d:repositoryName>
<r3d:additionalName language="eng">PhenoGen</r3d:additionalName>
<r3d:repositoryURL>https://phenogen.org/</r3d:repositoryURL>
<r3d:repositoryIdentifier>RRID:SCR_001613</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:nlx_153879</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:rid_000093</r3d:repositoryIdentifier>
<r3d:description language="eng">The PhenoGen website shares experimental data with a worldwide community of investigators and provides a flexible, integrated, multi-resolution repository of neuroscience transcriptomic genetic data for collaborative research on genomic disorders. The main development focus is on providing Hybrid Rat Diversity Panel transcriptomic data (sequencing, genome coverage, reconstructed totalRNA/smallRNA transcriptomes, quanification of the transcriptome, eQTLs, and WGCNA) and integrating additional tools to provide platform for visualization and analysis of HRDP transcriptome data.</r3d:description>
<r3d:repositoryContact>https://phenogen.org/web/common/contact.jsp</r3d:repositoryContact>
<r3d:type>disciplinary</r3d:type>
<r3d:size updated=""></r3d:size>
<r3d:startDate>2011</r3d:startDate>
<r3d:endDate></r3d:endDate>
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
<r3d:missionStatementURL>https://phenogen.org/helpdocs/PhenoGen_Overview_Left.htm#CSHID=Phenogen_Overview.htm%23Overview|StartTopic=Content%2FPhenogen_Overview.htm%23Overview|SkinName=PhenoGen</r3d:missionStatementURL>
<r3d:contentType contentTypeScheme="parse">Archived data</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Databases</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Source code</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
<r3d:providerType>dataProvider</r3d:providerType>
<r3d:providerType>serviceProvider</r3d:providerType>
<r3d:keyword>Quantitative Trait Locus QTL</r3d:keyword>
<r3d:keyword>alcohol consumption</r3d:keyword>
<r3d:keyword>behavioral neuroadaptations</r3d:keyword>
<r3d:keyword>brain neurocircuitries</r3d:keyword>
<r3d:keyword>cellular neuroadaptations</r3d:keyword>
<r3d:keyword>chromosome</r3d:keyword>
<r3d:keyword>ethanol</r3d:keyword>
<r3d:keyword>molecular neuroadaptations</r3d:keyword>
<r3d:keyword>mouse</r3d:keyword>
<r3d:keyword>rat</r3d:keyword>
<r3d:keyword>transcriptome</r3d:keyword>
<r3d:institution>
<r3d:institutionName language="eng">Integrative Neuroscience Initiative on Alcoholism</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">INIA</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.niaaa.nih.gov/integrative-neuroscience-initiative-alcoholism-inia</r3d:institutionURL>
<r3d:institutionIdentifier>ROR:00bame609</r3d:institutionIdentifier>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">National Institute on Alcohol Abuse and Alcoholism</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">NIAAA</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.niaaa.nih.gov/</r3d:institutionURL>
<r3d:institutionIdentifier>ROR:02jzrsm59</r3d:institutionIdentifier>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>https://www.niaaa.nih.gov/about-niaaa/contact-us</r3d:institutionContact>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">University of Colorado</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">CU</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.cu.edu/</r3d:institutionURL>
<r3d:institutionIdentifier>ROR:00jc20583</r3d:institutionIdentifier>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>https://www.cu.edu/contact-office-president</r3d:institutionContact>
</r3d:institution>
<r3d:policy>
<r3d:policyName>PhenoGen Informatics</r3d:policyName>
<r3d:policyURL>https://phenogen.org</r3d:policyURL>
</r3d:policy>
<r3d:policy>
<r3d:policyName>PhenoGen Website Overview</r3d:policyName>
<r3d:policyURL>https://phenogen.org/helpdocs/PhenoGen_Overview_Left.htm#CSHID=Phenogen_Overview.htm</r3d:policyURL>
</r3d:policy>
<r3d:databaseAccess>
<r3d:databaseAccessType>open</r3d:databaseAccessType>
</r3d:databaseAccess>
<r3d:dataAccess>
<r3d:dataAccessType>open</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataAccess>
<r3d:dataAccessType>restricted</r3d:dataAccessType>
<r3d:dataAccessRestriction>other</r3d:dataAccessRestriction>
</r3d:dataAccess>
<r3d:dataAccess>
<r3d:dataAccessType>restricted</r3d:dataAccessType>
<r3d:dataAccessRestriction>registration</r3d:dataAccessRestriction>
</r3d:dataAccess>
<r3d:dataLicense>
<r3d:dataLicenseName>Copyrights</r3d:dataLicenseName>
<r3d:dataLicenseURL>https://www.ucdenver.edu/legal</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataLicense>
<r3d:dataLicenseName>other</r3d:dataLicenseName>
<r3d:dataLicenseURL>https://www.ucdenver.edu/legal</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataUpload>
<r3d:dataUploadType>restricted</r3d:dataUploadType>
<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
</r3d:dataUpload>
<r3d:versioning>yes</r3d:versioning>
<r3d:api apiType="REST">https://rest-doc.phenogen.org</r3d:api>
<r3d:api apiType="REST">https://rest.phenogen.org</r3d:api>
<r3d:citationGuidelineURL>https://phenogen.org/web/common/citation.jsp</r3d:citationGuidelineURL>
<r3d:aidSystem>none</r3d:aidSystem>
<r3d:enhancedPublication>yes</r3d:enhancedPublication>
<r3d:qualityManagement>yes</r3d:qualityManagement>
<r3d:remarks>github: https://github.com/TabakoffLab/PhenogenCloud</r3d:remarks>
<r3d:entryDate>2015-06-02</r3d:entryDate>
<r3d:lastUpdate>2023-01-31</r3d:lastUpdate>
</r3d:repository>
</r3d:re3data>
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