110 lines
8.4 KiB
XML
110 lines
8.4 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100011569</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">PlasmoDB</r3d:repositoryName>
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<r3d:additionalName language="eng">Plasmodium Genomics Resource</r3d:additionalName>
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<r3d:repositoryURL>https://plasmodb.org/plasmo/app/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.g4n8sw</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>MIR:00000150</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>OMICS_02765</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_013331</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nif-0000-03314</r3d:repositoryIdentifier>
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<r3d:description language="eng">PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens that cause human and animal diseases, including malaria.</r3d:description>
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<r3d:repositoryContact>https://plasmodb.org/plasmo/app/contact-us</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate></r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">203 Zoology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20302 Evolution, Anthropology</r3d:subject>
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<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">20506 Pathology and Forensic Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL></r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured text</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>FAIR</r3d:keyword>
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<r3d:keyword>antibody</r3d:keyword>
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<r3d:keyword>genomics</r3d:keyword>
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<r3d:keyword>infectious disease</r3d:keyword>
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<r3d:keyword>medical research</r3d:keyword>
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<r3d:keyword>nucleic acid</r3d:keyword>
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<r3d:keyword>parasitology</r3d:keyword>
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<r3d:keyword>phylogenetics</r3d:keyword>
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<r3d:keyword>population biology</r3d:keyword>
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<r3d:keyword>proteomics</r3d:keyword>
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<r3d:keyword>spectrometry</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">National Institutes of Health, National Institute of Allergy and Infectious Diseases, Bioinformatics Resource Centers</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">BRC</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="eng">NIAID</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.niaid.nih.gov/research/bioinformatics-resource-centers</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://ned.nih.gov/search/ViewDetails.aspx?NIHID=2001097136</r3d:institutionContact>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>Data Access Policy</r3d:policyName>
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<r3d:policyURL>http://plasmodb.org/plasmo/showXmlDataContent.do?name=XmlQuestions.About#use</r3d:policyURL>
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</r3d:policy>
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<r3d:policy>
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<r3d:policyName>Data Submission Policy</r3d:policyName>
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<r3d:policyURL>http://plasmodb.org/EuPathDB_datasubm_SOP.pdf</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>embargoed</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://plasmodb.org/plasmo/showXmlDataContent.do?name=XmlQuestions.About#use</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>other</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:dataUploadLicense>
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<r3d:dataUploadLicenseName>Data Submission Policy</r3d:dataUploadLicenseName>
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<r3d:dataUploadLicenseURL>http://plasmodb.org/EuPathDB_datasubm_SOP.pdf</r3d:dataUploadLicenseURL>
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</r3d:dataUploadLicense>
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<r3d:software>
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<r3d:softwareName>CKAN</r3d:softwareName>
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</r3d:software>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="REST">http://plasmodb.org/plasmo/serviceList.jsp</r3d:api>
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<r3d:pidSystem>none</r3d:pidSystem>
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<r3d:citationGuidelineURL>http://plasmodb.org/plasmo/showXmlDataContent.do?name=XmlQuestions.About#citing</r3d:citationGuidelineURL>
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<r3d:aidSystem>none</r3d:aidSystem>
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<r3d:enhancedPublication>yes</r3d:enhancedPublication>
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<r3d:qualityManagement>unknown</r3d:qualityManagement>
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<r3d:metadataStandard>
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<r3d:metadataStandardName metadataStandardScheme="DCC">Repository-Developed Metadata Schemas</r3d:metadataStandardName>
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<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/repository-developed-metadata-schemas</r3d:metadataStandardURL>
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</r3d:metadataStandard>
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<r3d:syndication syndicationType="RSS">http://plasmodb.org/news.rss</r3d:syndication>
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<r3d:remarks>is covered by Elsevier.
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The relationship between EuPathDB and PlasmoDB is: PlasmoDB is a member of pathogen-databases that are housed under the NIAID-funded EuPathDB Bioinformatics Resource Center (BRC) umbrella.</r3d:remarks>
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<r3d:entryDate>2015-03-09</r3d:entryDate>
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<r3d:lastUpdate>2021-09-08</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |