157 lines
13 KiB
XML
157 lines
13 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100011479</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">TriTrypDB</r3d:repositoryName>
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<r3d:additionalName language="eng">kinetoplastid genomics resource</r3d:additionalName>
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<r3d:repositoryURL>https://tritrypdb.org/tritrypdb/app</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.fs1z27</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>MIR:00000155</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>OMICS_03144</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_007043</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nlx_152064</r3d:repositoryIdentifier>
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<r3d:description language="eng">TriTrypDB is an integrated genomic and functional genomic database for pathogens of the family Trypanosomatidae, including organisms in both Leishmania and Trypanosoma genera. TriTrypDB and its continued development are possible through the collaborative efforts between EuPathDB, GeneDB and colleagues at the Seattle Biomedical Research Institute (SBRI).</r3d:description>
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<r3d:repositoryContact>https://tritrypdb.org/tritrypdb/app/contact-us</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate>2009</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20403 Medical Microbiology, Molecular Infection Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL></r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Databases</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:providerType>serviceProvider</r3d:providerType>
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<r3d:keyword>Eedotrypanum</r3d:keyword>
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<r3d:keyword>FAIR</r3d:keyword>
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<r3d:keyword>biology</r3d:keyword>
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<r3d:keyword>crithidia</r3d:keyword>
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<r3d:keyword>euglenozoa</r3d:keyword>
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<r3d:keyword>eukaryotic pathogens</r3d:keyword>
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<r3d:keyword>genetics</r3d:keyword>
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<r3d:keyword>genomics</r3d:keyword>
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<r3d:keyword>kinetoplatid genomes</r3d:keyword>
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<r3d:keyword>leishmania</r3d:keyword>
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<r3d:keyword>metabolic pathways</r3d:keyword>
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<r3d:keyword>pathogen researcher</r3d:keyword>
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<r3d:keyword>trypanosoma</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Bill & Melinda Gates Foundation</r3d:institutionName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.gatesfoundation.org/en</r3d:institutionURL>
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<r3d:institutionIdentifier>RRID:SCR_006346</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_152065</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.gatesfoundation.org/Who-We-Are/General-Information/Contact-Us</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Eukaryotic Pathogen Bioinformatics Resource Center</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">EuPathDB Bioinformatics Resource Center</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://eupathdb.org/eupathdb/</r3d:institutionURL>
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<r3d:institutionIdentifier>RRID:SCR_004512</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_49652</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://eupathdb.org/eupathdb/contact.do</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">National Institute of Allergy and Infectious Deseases, Bioinformatics Resource Centers</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NIAID, BRC</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.niaid.nih.gov/research/bioinformatics-resource-centers</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.niaid.nih.gov/global/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">U.S. Department of Health and Human Services, National Institues of Health</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NIH</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.nih.gov/</r3d:institutionURL>
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<r3d:institutionIdentifier>RRID:SCR_011417</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_inv_1005116</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.nih.gov/about-nih/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Wellcome Trust Sanger Institute</r3d:institutionName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.sanger.ac.uk/</r3d:institutionURL>
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<r3d:institutionIdentifier>RRID:SCR_011784</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_91258</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://www.sanger.ac.uk/about/who-we-are/sanger-institute/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>Data access policy</r3d:policyName>
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<r3d:policyURL>http://tritrypdb.org/tritrypdb/showXmlDataContent.do?name=XmlQuestions.About#use</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>restricted</r3d:dataAccessType>
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<r3d:dataAccessRestriction>other</r3d:dataAccessRestriction>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>Public Domain</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://tritrypdb.org/tritrypdb/showXmlDataContent.do?name=XmlQuestions.About#use</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:dataUploadLicense>
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<r3d:dataUploadLicenseName>Data Submission and Release on uPathDB Databases</r3d:dataUploadLicenseName>
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<r3d:dataUploadLicenseURL>http://tritrypdb.org/EuPathDB_datasubm_SOP.pdf</r3d:dataUploadLicenseURL>
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</r3d:dataUploadLicense>
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<r3d:software>
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<r3d:softwareName>CKAN</r3d:softwareName>
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</r3d:software>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="REST">http://tritrypdb.org/tritrypdb/serviceList.jsp</r3d:api>
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<r3d:pidSystem>none</r3d:pidSystem>
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<r3d:citationGuidelineURL>http://tritrypdb.org/tritrypdb/showXmlDataContent.do?name=XmlQuestions.About#citing</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>yes</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:metadataStandard>
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<r3d:metadataStandardName metadataStandardScheme="DCC">Repository-Developed Metadata Schemas</r3d:metadataStandardName>
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<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/repository-developed-metadata-schemas</r3d:metadataStandardURL>
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</r3d:metadataStandard>
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<r3d:syndication syndicationType="RSS">http://tritrypdb.org/news.rss</r3d:syndication>
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<r3d:remarks>is covered by Elsevier.
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TriTryDB is a project of EuPathDB, formerly ApiDB</r3d:remarks>
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<r3d:entryDate>2015-04-27</r3d:entryDate>
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<r3d:lastUpdate>2021-10-08</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |