184 lines
15 KiB
XML
184 lines
15 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
|
|
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
|
|
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
|
|
<r3d:repository>
|
|
<r3d:re3data.orgIdentifier>r3d100011200</r3d:re3data.orgIdentifier>
|
|
<r3d:repositoryName language="eng">Ensembl Protists</r3d:repositoryName>
|
|
<r3d:additionalName language="eng">e!EnsemblProtists</r3d:additionalName>
|
|
<r3d:repositoryURL>http://protists.ensembl.org/index.html</r3d:repositoryURL>
|
|
<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.ad1zae</r3d:repositoryIdentifier>
|
|
<r3d:repositoryIdentifier>RRID:SCR_013154</r3d:repositoryIdentifier>
|
|
<r3d:repositoryIdentifier>RRID:nif-0000-33712</r3d:repositoryIdentifier>
|
|
<r3d:description language="eng">EnsemblProtists is a genome-centric portal for protists species.</r3d:description>
|
|
<r3d:repositoryContact>http://ensemblgenomes.org/info/about/contact</r3d:repositoryContact>
|
|
<r3d:type>disciplinary</r3d:type>
|
|
<r3d:type>institutional</r3d:type>
|
|
<r3d:size updated=""></r3d:size>
|
|
<r3d:startDate>2000</r3d:startDate>
|
|
<r3d:endDate></r3d:endDate>
|
|
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
|
|
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20401 Metabolism, Biochemistry and Genetics of Microorganisms</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
|
|
<r3d:missionStatementURL>http://ensemblgenomes.org/info/about</r3d:missionStatementURL>
|
|
<r3d:contentType contentTypeScheme="parse">Archived data</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
|
|
<r3d:providerType>dataProvider</r3d:providerType>
|
|
<r3d:providerType>serviceProvider</r3d:providerType>
|
|
<r3d:keyword>DNA</r3d:keyword>
|
|
<r3d:keyword>RNA</r3d:keyword>
|
|
<r3d:keyword>bioinformatics</r3d:keyword>
|
|
<r3d:keyword>biology</r3d:keyword>
|
|
<r3d:keyword>eukaryotic microorganisms</r3d:keyword>
|
|
<r3d:keyword>gene structure</r3d:keyword>
|
|
<r3d:keyword>genomics</r3d:keyword>
|
|
<r3d:keyword>microorganisms</r3d:keyword>
|
|
<r3d:keyword>simple cellular organization</r3d:keyword>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">Bill and Melinda Gates Foundation</r3d:institutionName>
|
|
<r3d:institutionCountry>USA</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.gatesfoundation.org/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:0456r8d26</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>https://www.gatesfoundation.org/Who-We-Are/General-Information/Contact-Us</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">European Commission, Seventh Framework Programme</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">EC, FP7</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>EEC</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>http://ec.europa.eu/research/fp7/index_en.cfm</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>https://ec.europa.eu/info/departments/research-and-innovation_en</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">European Molecular Biology Laboratory, European Bioinformatics Institute</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">EMBL-EBI</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>EEC</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:responsibilityType>technical</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.ebi.ac.uk/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>https://www.ebi.ac.uk/about/contact</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">National Human Genome Research Institute</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">NHGRI</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>USA</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.genome.gov/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:00baak391</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>https://www.genome.gov/10002900</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">National Institutes of Health, National Institute of Allergy and Infectious Diseases</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">NIAID</r3d:institutionAdditionalName>
|
|
<r3d:institutionAdditionalName language="eng">NIH</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>USA</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.niaid.nih.gov/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:043z4tv69</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>https://www.niaid.nih.gov/global/contact-us</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">Phytopath</r3d:institutionName>
|
|
<r3d:institutionCountry>GBR</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>http://www.phytopathdb.org/homepage</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>http://www.phytopathdb.org/content/contact-us</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">United Kingdom Biotechnology and Biosciences Research Council</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">BBSRC</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>GBR</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.bbsrc.ac.uk/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:00cwqg982</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>https://www.bbsrc.ac.uk/about/contact/</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">Wellcome Trust</r3d:institutionName>
|
|
<r3d:institutionCountry>GBR</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.wellcome.ac.uk/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:029chgv08</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>https://wellcome.ac.uk/about-us/contact-us</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:policy>
|
|
<r3d:policyName>Legal Notices</r3d:policyName>
|
|
<r3d:policyURL>http://ensemblgenomes.org/info/about/legal</r3d:policyURL>
|
|
</r3d:policy>
|
|
<r3d:databaseAccess>
|
|
<r3d:databaseAccessType>open</r3d:databaseAccessType>
|
|
</r3d:databaseAccess>
|
|
<r3d:databaseLicense>
|
|
<r3d:databaseLicenseName>other</r3d:databaseLicenseName>
|
|
<r3d:databaseLicenseURL>https://www.ebi.ac.uk/about/terms-of-use</r3d:databaseLicenseURL>
|
|
</r3d:databaseLicense>
|
|
<r3d:dataAccess>
|
|
<r3d:dataAccessType>open</r3d:dataAccessType>
|
|
</r3d:dataAccess>
|
|
<r3d:dataLicense>
|
|
<r3d:dataLicenseName>other</r3d:dataLicenseName>
|
|
<r3d:dataLicenseURL>http://ensemblgenomes.org/info/about/legal/browser_agreement</r3d:dataLicenseURL>
|
|
</r3d:dataLicense>
|
|
<r3d:dataLicense>
|
|
<r3d:dataLicenseName>other</r3d:dataLicenseName>
|
|
<r3d:dataLicenseURL>https://www.ebi.ac.uk/about/terms-of-use</r3d:dataLicenseURL>
|
|
</r3d:dataLicense>
|
|
<r3d:dataUpload>
|
|
<r3d:dataUploadType>restricted</r3d:dataUploadType>
|
|
<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
|
|
</r3d:dataUpload>
|
|
<r3d:dataUploadLicense>
|
|
<r3d:dataUploadLicenseName>Data Upload Disclaimer</r3d:dataUploadLicenseName>
|
|
<r3d:dataUploadLicenseURL>http://fungi.ensembl.org/info/website/upload/index.html#access</r3d:dataUploadLicenseURL>
|
|
</r3d:dataUploadLicense>
|
|
<r3d:software>
|
|
<r3d:softwareName>MySQL</r3d:softwareName>
|
|
</r3d:software>
|
|
<r3d:versioning>yes</r3d:versioning>
|
|
<r3d:api apiType="FTP">ftp://ftp.ensemblgenomes.org/pub/protists/release-46</r3d:api>
|
|
<r3d:api apiType="REST">http://ensemblgenomes.org/info/access/rest</r3d:api>
|
|
<r3d:api apiType="other">http://ensemblgenomes.org/info/access/api</r3d:api>
|
|
<r3d:pidSystem>none</r3d:pidSystem>
|
|
<r3d:citationGuidelineURL>http://ensemblgenomes.org/info/publications</r3d:citationGuidelineURL>
|
|
<r3d:enhancedPublication>yes</r3d:enhancedPublication>
|
|
<r3d:qualityManagement>yes</r3d:qualityManagement>
|
|
<r3d:remarks>EnsembleProtists uses Uniprot taxonomy. Since 2009, the EnsemblGenomes site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy. See also: e!ensembl</r3d:remarks>
|
|
<r3d:entryDate>2010-10-22</r3d:entryDate>
|
|
<r3d:lastUpdate>2021-09-09</r3d:lastUpdate>
|
|
</r3d:repository>
|
|
</r3d:re3data> |