121 lines
9.4 KiB
XML
121 lines
9.4 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
|
|
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
|
|
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
|
|
<r3d:repository>
|
|
<r3d:re3data.orgIdentifier>r3d100010746</r3d:re3data.orgIdentifier>
|
|
<r3d:repositoryName language="eng">PMN</r3d:repositoryName>
|
|
<r3d:additionalName language="eng">Plant Metabolic Network</r3d:additionalName>
|
|
<r3d:repositoryURL>https://plantcyc.org/</r3d:repositoryURL>
|
|
<r3d:repositoryIdentifier>OMICS_02764</r3d:repositoryIdentifier>
|
|
<r3d:repositoryIdentifier>RRID:SCR_003778</r3d:repositoryIdentifier>
|
|
<r3d:repositoryIdentifier>RRID:nlx_15806</r3d:repositoryIdentifier>
|
|
<r3d:description language="eng">The Plant Metabolic Network (PMN) provides a broad network of plant metabolic pathway databases that contain curated information from the literature and computational analyses about the genes, enzymes, compounds, reactions, and pathways involved in primary and secondary metabolism in plants. The PMN currently houses one multi-species reference database called PlantCyc and 22 species/taxon-specific databases.</r3d:description>
|
|
<r3d:repositoryContact>curator@plantcyc.org</r3d:repositoryContact>
|
|
<r3d:repositoryContact>https://plantcyc.org/about/contact-feedback</r3d:repositoryContact>
|
|
<r3d:type>disciplinary</r3d:type>
|
|
<r3d:type>institutional</r3d:type>
|
|
<r3d:size updated=""></r3d:size>
|
|
<r3d:startDate>2008</r3d:startDate>
|
|
<r3d:endDate></r3d:endDate>
|
|
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
|
|
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">202 Plant Sciences</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20205 Plant Biochemistry and Biophysics</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20206 Plant Cell and Developmental Biology</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20207 Plant Genetics</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
|
|
<r3d:missionStatementURL>https://plantcyc.org/about/</r3d:missionStatementURL>
|
|
<r3d:contentType contentTypeScheme="parse">Audiovisual data</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Databases</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
|
|
<r3d:providerType>dataProvider</r3d:providerType>
|
|
<r3d:providerType>serviceProvider</r3d:providerType>
|
|
<r3d:keyword>biochemical reaction</r3d:keyword>
|
|
<r3d:keyword>biochemistry</r3d:keyword>
|
|
<r3d:keyword>biology</r3d:keyword>
|
|
<r3d:keyword>enzymes</r3d:keyword>
|
|
<r3d:keyword>genes</r3d:keyword>
|
|
<r3d:keyword>genomes</r3d:keyword>
|
|
<r3d:keyword>pathway</r3d:keyword>
|
|
<r3d:keyword>plant metabolism</r3d:keyword>
|
|
<r3d:keyword>protein</r3d:keyword>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">National Science Foundation</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">NSF</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>USA</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://nsf.gov/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:021nxhr62</r3d:institutionIdentifier>
|
|
<r3d:institutionIdentifier>RRID:SCR_012938</r3d:institutionIdentifier>
|
|
<r3d:institutionIdentifier>RRID:nlx_inv_1005118</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">Stanford University, Carnegie Institution for Science, Department of Plant Biology</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">Carnegie Institution for Science</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>USA</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:responsibilityType>technical</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://dpb.carnegiescience.edu/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>https://dpb.carnegiescience.edu/about/contact</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">US Department of Energy, Office of Science</r3d:institutionName>
|
|
<r3d:institutionCountry>USA</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.energy.gov/science/office-science</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:00mmn6b08</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:databaseAccess>
|
|
<r3d:databaseAccessType>open</r3d:databaseAccessType>
|
|
</r3d:databaseAccess>
|
|
<r3d:databaseLicense>
|
|
<r3d:databaseLicenseName>other</r3d:databaseLicenseName>
|
|
<r3d:databaseLicenseURL>https://plantcyc.org/downloads/license-agreement</r3d:databaseLicenseURL>
|
|
</r3d:databaseLicense>
|
|
<r3d:dataAccess>
|
|
<r3d:dataAccessType>open</r3d:dataAccessType>
|
|
</r3d:dataAccess>
|
|
<r3d:dataAccess>
|
|
<r3d:dataAccessType>restricted</r3d:dataAccessType>
|
|
<r3d:dataAccessRestriction>registration</r3d:dataAccessRestriction>
|
|
</r3d:dataAccess>
|
|
<r3d:dataLicense>
|
|
<r3d:dataLicenseName>ODC</r3d:dataLicenseName>
|
|
<r3d:dataLicenseURL>https://opendatacommons.org/licenses/odbl/</r3d:dataLicenseURL>
|
|
</r3d:dataLicense>
|
|
<r3d:dataUpload>
|
|
<r3d:dataUploadType>restricted</r3d:dataUploadType>
|
|
<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
|
|
</r3d:dataUpload>
|
|
<r3d:dataUploadLicense>
|
|
<r3d:dataUploadLicenseName>Submitting Data to PMN</r3d:dataUploadLicenseName>
|
|
<r3d:dataUploadLicenseURL>https://plantcyc.org/feedback/data-submission</r3d:dataUploadLicenseURL>
|
|
</r3d:dataUploadLicense>
|
|
<r3d:software>
|
|
<r3d:softwareName>other</r3d:softwareName>
|
|
</r3d:software>
|
|
<r3d:versioning>yes</r3d:versioning>
|
|
<r3d:pidSystem>DOI</r3d:pidSystem>
|
|
<r3d:pidSystem>other</r3d:pidSystem>
|
|
<r3d:citationGuidelineURL>https://plantcyc.org/about/citing-pmn</r3d:citationGuidelineURL>
|
|
<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
|
|
<r3d:qualityManagement>yes</r3d:qualityManagement>
|
|
<r3d:remarks>databases: https://plantcyc.org/databases</r3d:remarks>
|
|
<r3d:entryDate>2013-11-25</r3d:entryDate>
|
|
<r3d:lastUpdate>2021-12-22</r3d:lastUpdate>
|
|
</r3d:repository>
|
|
</r3d:re3data> |