99 lines
8.5 KiB
XML
99 lines
8.5 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100010673</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">The Microbial Protein Interaction Database</r3d:repositoryName>
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<r3d:additionalName language="eng">MPIDB</r3d:additionalName>
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<r3d:repositoryURL>http://www.jcvi.org/cms/home/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>RRID:SCR_001898</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nif-0000-10467</r3d:repositoryIdentifier>
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<r3d:description language="eng">>>>!!!<<< as stated 2017-06-09 MPIDB is no longer available under URL http://www.jcvi.org/mpidb/about.php >>>!!!<<< The microbial protein interaction database (MPIDB) aims to collect and provide all known physical microbial interactions. Currently, 24,295 experimentally determined interactions among proteins of 250 bacterial species/strains can be browsed and downloaded. These microbial interactions have been manually curated from the literature or imported from other databases (IntAct, DIP, BIND, MINT) and are linked to 26,578 experimental evidences (PubMed ID, PSI-MI methods). In contrast to these databases, interactions in MPIDB are further supported by 68,346 additional evidences based on interaction conservation, protein complex membership, and 3D domain contacts (iPfam, 3did). We do not include (spoke/matrix) binary interactions infered from pull-down experiments.</r3d:description>
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<r3d:repositoryContact>purchasing@jcvi.org</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated="2014-03-28">250 species, 7810 proteins, 24295 interactions, 26578 experiments, 1708 publications</r3d:size>
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<r3d:startDate>2008</r3d:startDate>
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<r3d:endDate>2017-06-09</r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20101 Biochemistry</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:missionStatementURL></r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:providerType>serviceProvider</r3d:providerType>
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<r3d:keyword>bacteria</r3d:keyword>
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<r3d:keyword>interologs</r3d:keyword>
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<r3d:keyword>microbial interaction</r3d:keyword>
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<r3d:keyword>species</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">HUPO Proteomics Standards Initiative</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">PSI</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>sponsoring</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.psidev.info/overview</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">International Molecular Exchange Consortium</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">IMEx</r3d:institutionAdditionalName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.imexconsortium.org/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">J. Craig Venter Institute</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">JCVI</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.jcvi.org/cms/home/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>IMEx Curation Rules</r3d:policyName>
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<r3d:policyURL>http://www.imexconsortium.org/curation</r3d:policyURL>
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</r3d:policy>
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<r3d:policy>
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<r3d:policyName>JVCI Policy - Promoting Objectivity in Research under Public Health Service Regulations</r3d:policyName>
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<r3d:policyURL>http://www.jcvi.org/cms/legal/promoting-objectivity-in-research/</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>CC</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://creativecommons.org/licenses/by/2.5/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>other</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:dataUploadLicense>
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<r3d:dataUploadLicenseName>IMEx data submission</r3d:dataUploadLicenseName>
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<r3d:dataUploadLicenseURL>http://www.imexconsortium.org/submit-your-data</r3d:dataUploadLicenseURL>
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</r3d:dataUploadLicense>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="FTP">ftp://ftp.jcvi.org/</r3d:api>
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<r3d:citationGuidelineURL>http://www.jcvi.org/cms/legal/data-disclaimer/</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>unknown</r3d:qualityManagement>
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<r3d:remarks>MPIDB is partner of the International Molcular Exchange Consortium (IMEx). The Microbial Protein Interaction Database relies on many fine resources maintained elsewhere: UniProt,Gene Ontology, PDBsum,3DID, iPfam, IntAct,BIND, DIP, MINT, Pfam</r3d:remarks>
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<r3d:entryDate>2014-03-28</r3d:entryDate>
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<r3d:lastUpdate>2021-10-14</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |