100 lines
9.0 KiB
XML
100 lines
9.0 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100010573</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">caArray</r3d:repositoryName>
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<r3d:additionalName language="eng">Array Data Management System</r3d:additionalName>
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<r3d:repositoryURL>https://wiki.nci.nih.gov/display/caArray2/caArray+Retirement+Announcement</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.gdqqm0</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:OMICS_00864</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_006053</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nlx_151452</r3d:repositoryIdentifier>
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<r3d:description language="eng">>>>!!!<<< caArray Retirement Announcement >>>!!!<<< The National Cancer Institute (NCI) Center for Biomedical Informatics and Information Technology (CBIIT) instance of the caArray database was retired on March 31st, 2015. All publicly-accessible caArray data and annotations will be archived and will remain available via FTP download https://wiki.nci.nih.gov/x/UYHeDQ and is also available at GEO http://www.ncbi.nlm.nih.gov/geo/ . >>>!!!<<< While NCI will not be able to provide technical support for the caArray software after the retirement, the source code is available on GitHub https://github.com/NCIP/caarray , and we encourage continued community development. Molecular Analysis of Brain Neoplasia (Rembrandt fine-00037) gene expression data has been loaded into ArrayExpress: http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-3073 >>>!!!<<< caArray is an open-source, web and programmatically accessible microarray data management system that supports the annotation of microarray data using MAGE-TAB and web-based forms. Data and annotations may be kept private to the owner, shared with user-defined collaboration groups, or made public. The NCI instance of caArray hosts many cancer-related public datasets available for download.</r3d:description>
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<r3d:repositoryContact>ncicbiit@mail.nih.gov</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:type>institutional</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate>2008</r3d:startDate>
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<r3d:endDate>2015-03-31</r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20103 Cell Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">20514 Hematology, Oncology, Transfusion Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL></r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Archived data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured text</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>bioinformatics</r3d:keyword>
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<r3d:keyword>cancer</r3d:keyword>
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<r3d:keyword>gene expression</r3d:keyword>
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<r3d:keyword>microarray</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">U.S. Department of Health and Human Services, National Institutes of Health, National Cancer Institute</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NCI</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.cancer.gov/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>ncicb@pop.nci.nih.gov</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">U.S. Department of Health and Human Services, National Institutes of Health, National Cancer Institute, Center for Biomedical Informatics and Information Technology</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">CBIIT</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://cbiit.nci.nih.gov/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>ncicb@pop.nci.nih.gov</r3d:institutionContact>
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</r3d:institution>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:databaseLicense>
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<r3d:databaseLicenseName>BSD</r3d:databaseLicenseName>
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<r3d:databaseLicenseURL>http://opensource.org/licenses/BSD-3-Clause</r3d:databaseLicenseURL>
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</r3d:databaseLicense>
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<r3d:dataAccess>
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<r3d:dataAccessType>closed</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>restricted</r3d:dataAccessType>
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<r3d:dataAccessRestriction>registration</r3d:dataAccessRestriction>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://wiki.nci.nih.gov/display/caArray2doc/2+-+Getting+Started+in+caArray</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="other">https://wiki.nci.nih.gov/display/caArray2doc/caArray+Legacy+API+v2.3+Reference</r3d:api>
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<r3d:citationGuidelineURL></r3d:citationGuidelineURL>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:remarks>caArray is covered by Thomson Reuters Data Citation Index.</r3d:remarks>
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<r3d:entryDate>2013-12-17</r3d:entryDate>
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<r3d:lastUpdate>2022-12-12</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |