r3d100011301 Plant Transcription Factor Database PlantTFDB http://planttfdb.cbi.pku.edu.cn/ FAIRsharing_doi:10.25504/FAIRsharing.ex3fqk OMICS_00560 RRID:SCR_003362 RRID:nif-0000-03311 Species included in PlantTFDB 4.0 covers the main lineages of green plants. Therefore, PlantTFDB provides genomic TF repertoires across Viridiplantae. To provide comprehensive information for the TF family, a brief introduction and key references are presented for each family. Comprehensive annotations are made for each identified TF, including functional domains, 3D structures, gene ontology (GO), plant ontology (PO), expression information, expert-curated functional description, regulation information, interaction, conserved elements, references, and annotations in various databases such as UniProt, RefSeq, TransFac, STRING, and VISTA. By inferring orthologous groups and constructing phylogenetic trees, evolutionary relationships among identified TFs were inferred. In addition, PlantTFDB has a simple and user-friendly interface to allow users to query based on combined conditions or make sequence similarity search using BLAST. english@moe.edu.cn disciplinary 320.370 transcription factors; 165 species; 58 families 2010 eng 2 Life Sciences 201 Basic Biological and Medical Research 20107 Bioinformatics and Theoretical Biology 202 Plant Sciences 20207 Plant Genetics 21 Biology http://planttfdb.cbi.pku.edu.cn/aboutus.php Archived data Plain text Scientific and statistical data formats dataProvider BLAST genome sequences life sciences miRNA Ministry of Education of the Peoples's Republic of China 国家自然科学基金委员会 京ICP备 CHN funding non-profit http://www.moe.gov.cn/publicfiles/business/htmlfiles/moe/moe_2792/index.html english@moe.edu.cn National Basic Research Program of China 973 Program CHN funding non-profit http://www.most.gov.cn/eng/programmes1/200610/t20061009_36223.htm National High-tech R & D Program 863 Program HTRDP 863 CHN funding non-profit http://www.most.gov.cn/eng/programmes1/ program@most.cn National Natural Science Foundation of China 国家自然科学基金委员会 京ICP备 CHN funding non-profit http://www.nsfc.gov.cn/english/site_1/index.html Bic@nsfc.gov.cn Peking University, Center for Bioinformatics PKU CBI 北大生物信息中心 CHN general non-profit http://www.cbi.pku.edu.cn/ http://www.cbi.pku.edu.cn/people/cbifaculty/index.htm open open Copyrights http://planttfdb.cbi.pku.edu.cn/index.php closed unknown yes http://www.cbi.pku.edu.cn/download/index.htm none http://planttfdb.cbi.pku.edu.cn/aboutus.php unknown unknown Plant Transcription Factor Database is covered by Thomson Reuters Data Citation Index 2014-11-27 2021-08-24