223 lines
18 KiB
XML
223 lines
18 KiB
XML
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<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100011199</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">Ensembl Plants</r3d:repositoryName>
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<r3d:additionalName language="eng">e!EnsemblPlants</r3d:additionalName>
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<r3d:repositoryURL>http://plants.ensembl.org/index.html</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.j8g2cv</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>MIR:00000205</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_008680</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nif-0000-33715</r3d:repositoryIdentifier>
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<r3d:description language="eng">EnsemblPlants is a genome-centric portal for plant species. Ensembl Plants is developed in coordination with other plant genomics and bioinformatics groups via the EBI's role in the transPLANT consortium.</r3d:description>
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<r3d:repositoryContact>http://plants.ensembl.org/Help/Contact</r3d:repositoryContact>
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<r3d:repositoryContact>http://plants.ensembl.org/info/about/contact/index.html</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate>2000</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">202 Plant Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">20207 Plant Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:missionStatementURL>http://ensemblgenomes.org/info/about</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Archived data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured text</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:providerType>serviceProvider</r3d:providerType>
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<r3d:keyword>DNA</r3d:keyword>
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<r3d:keyword>RNA</r3d:keyword>
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<r3d:keyword>bioinformatics</r3d:keyword>
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<r3d:keyword>biology</r3d:keyword>
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<r3d:keyword>gene models</r3d:keyword>
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<r3d:keyword>genome</r3d:keyword>
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<r3d:keyword>plants</r3d:keyword>
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<r3d:keyword>proteins</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Bill and Melinda Gates Foundation</r3d:institutionName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.gatesfoundation.org/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:0456r8d26</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.gatesfoundation.org/Who-We-Are/General-Information/Contact-Us</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">European Commission, Research & Innovation, Seventh Framework Programm - FP7</r3d:institutionName>
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<r3d:institutionCountry>EEC</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://ec.europa.eu/research/fp7/index_en.cfm</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://cordis.europa.eu/project/rcn/99709/factsheet/en</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">European Molecular Biology Laboratory, European Bioinformatics Institute</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">EMBL-EBI</r3d:institutionAdditionalName>
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<r3d:institutionCountry>EEC</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.ebi.ac.uk/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.ebi.ac.uk/about/contact</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Gramene</r3d:institutionName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.gramene.org/</r3d:institutionURL>
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<r3d:institutionIdentifier>RRID:SCR_000532</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_002829</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nif-0000-02926</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_65829</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://www.gramene.org/feedback</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">National Institutes of Health, National Human Genome Research Institute</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NHGRI</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.genome.gov/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:00baak391</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.genome.gov/10002900/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">National Institutes of Health, National Institute of Allergy and Infectious Diseases</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NIAID</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="eng">NIH</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.niaid.nih.gov/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:043z4tv69</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.niaid.nih.gov/global/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Triticeae Genomics For Sustainable Agriculture</r3d:institutionName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.wheatgenome.org.uk/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">UK Barley Genome Sequencing</r3d:institutionName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.barleygenome.org.uk/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.barleygenome.org.uk/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">United Kingdom Biotechnology and Biosciences Research Council</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">BBSRC</r3d:institutionAdditionalName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://bbsrc.ukri.org/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:00cwqg982</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://bbsrc.ukri.org/about/contact/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Wellcome Trust</r3d:institutionName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://wellcome.ac.uk/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:029chgv08</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://wellcome.ac.uk/about-us/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">transPLANT</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">trans-National Infrastructure for Plant Genomic Science</r3d:institutionAdditionalName>
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<r3d:institutionCountry>EEC</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.transplantdb.eu/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://www.transplantdb.eu/contact</r3d:institutionContact>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>Legal Notices</r3d:policyName>
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<r3d:policyURL>http://ensemblgenomes.org/info/about/legal</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:databaseLicense>
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<r3d:databaseLicenseName>other</r3d:databaseLicenseName>
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<r3d:databaseLicenseURL>https://www.ebi.ac.uk/about/terms-of-use</r3d:databaseLicenseURL>
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</r3d:databaseLicense>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>Apache License 2.0</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://www.apache.org/licenses/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://www.ensembl.org/info/about/legal/disclaimer.html</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://www.ensembl.org/info/about/legal/image_reuse.html</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://www.ebi.ac.uk/about/terms-of-use</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:dataUploadLicense>
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<r3d:dataUploadLicenseName>Data Upload Disclaimer</r3d:dataUploadLicenseName>
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<r3d:dataUploadLicenseURL>http://plants.ensembl.org/info/website/upload/index.html</r3d:dataUploadLicenseURL>
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</r3d:dataUploadLicense>
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<r3d:software>
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<r3d:softwareName>MySQL</r3d:softwareName>
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</r3d:software>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="FTP">ftp://ftp.ensemblgenomes.org/pub/plants/</r3d:api>
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<r3d:api apiType="REST">http://rest.ensembl.org/</r3d:api>
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<r3d:api apiType="other">http://ensemblgenomes.org/info/access/api</r3d:api>
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<r3d:pidSystem>none</r3d:pidSystem>
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<r3d:citationGuidelineURL>http://www.ensembl.org/info/about/publications.html</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>yes</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:remarks>EnsemblPlants uses Uniprot taxonomy. Since 2009, the EnsemblGenomes site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy. See also: e!ensembl</r3d:remarks>
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<r3d:entryDate>2014-10-22</r3d:entryDate>
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<r3d:lastUpdate>2021-10-11</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data>
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