149 lines
12 KiB
XML
149 lines
12 KiB
XML
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<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100010861</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">Reactome</r3d:repositoryName>
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<r3d:additionalName language="eng">a curated pathway database</r3d:additionalName>
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<r3d:repositoryURL>https://reactome.org/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.tf6kj8</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>MIR:00000018</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>OMICS_02771</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_003485</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nif-0000-03390</r3d:repositoryIdentifier>
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<r3d:description language="eng">Reactome is a manually curated, peer-reviewed pathway database, annotated by expert biologists and cross-referenced to bioinformatics databases. Its aim is to share information in the visual representations of biological pathways in a computationally accessible format. Pathway annotations are authored by expert biologists, in collaboration with Reactome editorial staff and cross-referenced to many bioinformatics databases. These include NCBI Gene, Ensembl and UniProt databases, the UCSC and HapMap Genome Browsers, the KEGG Compound and ChEBI small molecule databases, PubMed, and Gene Ontology.</r3d:description>
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<r3d:repositoryContact>help@reactome.org</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate>2004</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">206 Neurosciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL>https://reactome.org/what-is-reactome/</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Archived data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>COVID-19</r3d:keyword>
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<r3d:keyword>bioinformatics</r3d:keyword>
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<r3d:keyword>genetics</r3d:keyword>
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<r3d:keyword>genome analysis</r3d:keyword>
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<r3d:keyword>molecular interaction</r3d:keyword>
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<r3d:keyword>molecular reaction</r3d:keyword>
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<r3d:keyword>pathway modelling</r3d:keyword>
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<r3d:keyword>systems biology</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Cold Spring Harbor Laboratory</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">CSHL</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.cshl.edu/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:02qz8b764</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_008326</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nif-0000-24690</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate>2004</r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.cshl.edu/About-Us/contact-us/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">European Molecular Biology Laboratory, European Bioinformatics Institute</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">EMBL - EBI</r3d:institutionAdditionalName>
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<r3d:institutionCountry>EEC</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.ebi.ac.uk/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:02catss52</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_004727</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_72386</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.ebi.ac.uk/about/contact</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">NYU School of Medicine, NYU Langone Health</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NYU Langone Health</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://med.nyu.edu/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>Peter.D'Eustachio@nyumc.org</r3d:institutionContact>
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<r3d:institutionContact>https://med.nyu.edu/faculty/peter-g-d-eustachio</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">National Institutes of Health, National Human Genome Research Institute</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NIH, NHGRI</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.genome.gov/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:00baak391</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_011416</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_inv_1005098</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.genome.gov/10002900/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Ontario Institute for Cancer Research</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">OICR</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://oicr.on.ca/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:043q8yx54</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_010609</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_51701</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://oicr.on.ca/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>Documentation</r3d:policyName>
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<r3d:policyURL>https://reactome.org/documentation/</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:databaseLicense>
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<r3d:databaseLicenseName>CC0</r3d:databaseLicenseName>
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<r3d:databaseLicenseURL>https://creativecommons.org/publicdomain/zero/1.0/</r3d:databaseLicenseURL>
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</r3d:databaseLicense>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>CC</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://creativecommons.org/licenses/by/4.0/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>closed</r3d:dataUploadType>
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</r3d:dataUpload>
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<r3d:software>
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<r3d:softwareName>MySQL</r3d:softwareName>
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</r3d:software>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="REST">https://reactome.org/ContentService/</r3d:api>
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<r3d:pidSystem>DOI</r3d:pidSystem>
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<r3d:citationGuidelineURL>https://reactome.org/cite/</r3d:citationGuidelineURL>
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<r3d:aidSystem>ORCID</r3d:aidSystem>
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<r3d:enhancedPublication>no</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:remarks></r3d:remarks>
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<r3d:entryDate>2014-07-21</r3d:entryDate>
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<r3d:lastUpdate>2021-06-02</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data>
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