137 lines
11 KiB
XML
137 lines
11 KiB
XML
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<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100010137</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">PRoteomics IDEntifications Database</r3d:repositoryName>
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<r3d:additionalName language="eng">PRIDE</r3d:additionalName>
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<r3d:repositoryURL>https://wwwdev.ebi.ac.uk/pride/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.e1byny</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>MIR:00100094</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>OMICS_02456</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_003411</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nif-0000-03336</r3d:repositoryIdentifier>
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<r3d:description language="eng">The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. PRIDE encourages and welcomes direct user submissions of mass spectrometry data to be published in peer-reviewed publications.</r3d:description>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated="2021-04-21">13.226 datasets</r3d:size>
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<r3d:startDate>2008</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20101 Biochemistry</r3d:subject>
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<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">3 Natural Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">304 Analytical Chemistry, Method Development (Chemistry)</r3d:subject>
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<r3d:subject subjectScheme="DFG">30401 Analytical Chemistry, Method Development (Chemistry)</r3d:subject>
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<r3d:subject subjectScheme="DFG">31 Chemistry</r3d:subject>
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<r3d:missionStatementURL>https://wwwdev.ebi.ac.uk/pride/markdownpage/citationpage</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Archived data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured text</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>amino acids</r3d:keyword>
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<r3d:keyword>mass spectra</r3d:keyword>
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<r3d:keyword>mass spectrometry</r3d:keyword>
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<r3d:keyword>peptide identifications</r3d:keyword>
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<r3d:keyword>protein identifications</r3d:keyword>
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<r3d:keyword>proteomics</r3d:keyword>
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<r3d:keyword>sequencing</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">BBSRC</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">Biotechnology and Biological Sciences Research Council</r3d:institutionAdditionalName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://bbsrc.ukri.org/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:00cwqg982</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">European Commission, Research & Innovation, Seventh Framework Programm - FP7</r3d:institutionName>
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<r3d:institutionCountry>EEC</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://ec.europa.eu/info/research-and-innovation_en</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">European Molecular Biology Laboratory, European Bioinformatics Institute</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">EMBL-EBI</r3d:institutionAdditionalName>
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<r3d:institutionCountry>EEC</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.ebi.ac.uk/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:02catss52</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_004727</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_72386</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate>2008</r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.ebi.ac.uk/about/contact</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Wellcome trust</r3d:institutionName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://wellcome.org/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:029chgv08</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>Terms of use</r3d:policyName>
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<r3d:policyURL>https://www.ebi.ac.uk/about/terms-of-use/</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:databaseLicense>
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<r3d:databaseLicenseName>other</r3d:databaseLicenseName>
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<r3d:databaseLicenseURL>https://www.apache.org/licenses/LICENSE-2.0.html</r3d:databaseLicenseURL>
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</r3d:databaseLicense>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>restricted</r3d:dataAccessType>
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<r3d:dataAccessRestriction>registration</r3d:dataAccessRestriction>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>CC</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://creativecommons.org/licenses/by/2.5/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:dataUploadLicense>
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<r3d:dataUploadLicenseName>Submission Guidelines</r3d:dataUploadLicenseName>
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<r3d:dataUploadLicenseURL>https://www.ebi.ac.uk/pride/markdownpage/submitdatapage</r3d:dataUploadLicenseURL>
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</r3d:dataUploadLicense>
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<r3d:software>
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<r3d:softwareName>other</r3d:softwareName>
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</r3d:software>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="FTP">ftp://ftp.pride.ebi.ac.uk/pride/data/archive</r3d:api>
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<r3d:api apiType="REST">https://www.ebi.ac.uk/pride/ws/archive/</r3d:api>
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<r3d:pidSystem>DOI</r3d:pidSystem>
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<r3d:citationGuidelineURL>https://wwwdev.ebi.ac.uk/pride/markdownpage/citationpage</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:remarks>PRIDE is covered by Thomson Reuters Data Citation Index. Project information is hosted at google code; PRIDE is a core member of the ProteomExchange consortium. All PRIDE public datasets can also be searched in ProteomeCentral, the portal for all ProteomeXchange datasets.</r3d:remarks>
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<r3d:entryDate>2013-06-24</r3d:entryDate>
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<r3d:lastUpdate>2021-11-09</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data>
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