134 lines
11 KiB
XML
134 lines
11 KiB
XML
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<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100011858</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">PATRIC</r3d:repositoryName>
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<r3d:additionalName language="eng">Pathosystems Resource Integration Center</r3d:additionalName>
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<r3d:repositoryURL>https://www.patricbrc.org/portal/portal/patric/Home</r3d:repositoryURL>
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<r3d:repositoryIdentifier>OMICS_01658</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_004154</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nlx_17476</r3d:repositoryIdentifier>
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<r3d:description language="eng"><<<!!!<<< This repository is no longer available. >>>!!!>>>
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PATRIC will go offline by mid-December2022. Here is what you need to know.
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As announced previously, PATRIC, the bacterial BRC, and IRD / ViPR, the viral BRCs, are being merged into the new Bacterial and Viral Bioinformatics Resource Center (BV-BRC). BV-BRC combines the data, tools, and technologies from these BRCs to provide an integrated resource for bacterial and viral genomics-based infectious disease research.</r3d:description>
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<r3d:repositoryContact>help@patricbrc.org</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate>2009</r3d:startDate>
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<r3d:endDate>2022-12</r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
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<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL>https://www.patricbrc.org/portal/portal/patric/Home</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>bacteria</r3d:keyword>
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<r3d:keyword>bacterial species</r3d:keyword>
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<r3d:keyword>bioinformatics</r3d:keyword>
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<r3d:keyword>biology</r3d:keyword>
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<r3d:keyword>genomes</r3d:keyword>
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<r3d:keyword>genomics</r3d:keyword>
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<r3d:keyword>infectious disease</r3d:keyword>
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<r3d:keyword>procaryotics</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Bioinformatics Resource Centers</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">BRCs</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.niaid.nih.gov/LabsAndResources/resources/dmid/brc/Pages/awards.aspx</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>alison.yao@nih.gov</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">National Institutes of Health, National Institute of Allergy and Infectious Diseases</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NIAID</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="eng">NIH</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="eng">National Institute of Allergy and Infectious Diseases</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.niaid.nih.gov/Pages/default.aspx</r3d:institutionURL>
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<r3d:responsibilityStartDate>2009</r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://www.niaid.nih.gov/links_policies/Pages/contact_us.aspx</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">University of Chicago</r3d:institutionName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.uchicago.edu/</r3d:institutionURL>
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<r3d:responsibilityStartDate>2009</r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>help@patricbrc.org</r3d:institutionContact>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>NIAID/Division of Microbiology and Infectious Diseases (DMID) Data Sharing and Release Guidelines</r3d:policyName>
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<r3d:policyURL>http://www.niaid.nih.gov/LabsAndResources/resources/dmid/Pages/data.aspx</r3d:policyURL>
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</r3d:policy>
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<r3d:policy>
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<r3d:policyName>PATRIC Data Release Policy</r3d:policyName>
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<r3d:policyURL>http://enews.patricbrc.org/data-release-policy/</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:databaseLicense>
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<r3d:databaseLicenseName>other</r3d:databaseLicenseName>
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<r3d:databaseLicenseURL>http://www.opensource.org/licenses/</r3d:databaseLicenseURL>
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</r3d:databaseLicense>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://enews.patricbrc.org/data-release-policy/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://www.niaid.nih.gov/LabsAndResources/resources/dmid/Pages/data.aspx</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>other</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:software>
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<r3d:softwareName>unknown</r3d:softwareName>
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</r3d:software>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="FTP">ftp://ftp.patricbrc.org/patric2/</r3d:api>
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<r3d:pidSystem>none</r3d:pidSystem>
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<r3d:citationGuidelineURL>http://enews.patricbrc.org/citing-patric/</r3d:citationGuidelineURL>
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<r3d:aidSystem>none</r3d:aidSystem>
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<r3d:enhancedPublication>yes</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:metadataStandard>
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<r3d:metadataStandardName metadataStandardScheme="DCC">Genome Metadata</r3d:metadataStandardName>
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<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/genome-metadata</r3d:metadataStandardURL>
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</r3d:metadataStandard>
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<r3d:syndication syndicationType="RSS">http://enews.patricbrc.org/feed/</r3d:syndication>
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<r3d:remarks>Description: "The PATRIC website provides an entry point to integrated data and tools for bacterial infectious disease research. The website is organized by data types and analysis tools. Primary access is provided through the PATRIC main menu, available at the top of the home page."
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University of Chicago is one of four Bioinformatics Resource Centers awarded by NIAID to provide data, tools and services which can be accessed through publicly available sites.</r3d:remarks>
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<r3d:entryDate>2015-09-21</r3d:entryDate>
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<r3d:lastUpdate>2022-12-19</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data>
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