110 lines
8.5 KiB
XML
110 lines
8.5 KiB
XML
|
<?xml version="1.0" encoding="utf-8"?>
|
||
|
|
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
|
||
|
|
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
|
||
|
|
<r3d:repository>
|
||
|
|
<r3d:re3data.orgIdentifier>r3d100010883</r3d:re3data.orgIdentifier>
|
||
|
|
<r3d:repositoryName language="eng">The Global Proteome Machine</r3d:repositoryName>
|
||
|
|
<r3d:additionalName language="eng">GPM</r3d:additionalName>
|
||
|
|
<r3d:additionalName language="eng">Proteomics data analysis, reuse and validation for biological and biomedical research</r3d:additionalName>
|
||
|
|
<r3d:repositoryURL>https://www.thegpm.org/index.html</r3d:repositoryURL>
|
||
|
|
<r3d:repositoryIdentifier>RRID:SCR_006617</r3d:repositoryIdentifier>
|
||
|
|
<r3d:repositoryIdentifier>RRID:nif-0000-10455</r3d:repositoryIdentifier>
|
||
|
|
<r3d:description language="eng">The Global Proteome Machine (GPM) is a protein identification database. This data repository allows users to post and compare results. GPM's data is provided by contributors like The Informatics Factory, University of Michigan, and Pacific Northwestern National Laboratories. The GPM searchable databases are: GPMDB, pSYT, SNAP, MRM, PEPTIDE and HOT.</r3d:description>
|
||
|
|
<r3d:repositoryContact>contact@thegpm.org</r3d:repositoryContact>
|
||
|
|
<r3d:repositoryContact>rbeavis@beavisinformatics.ca</r3d:repositoryContact>
|
||
|
|
<r3d:type>disciplinary</r3d:type>
|
||
|
|
<r3d:type>institutional</r3d:type>
|
||
|
|
<r3d:size updated="2019-12-02">484.572 models; 873.636.449 proteins; 9.187.164.998 peptides; 128.620.309.972 residues</r3d:size>
|
||
|
|
<r3d:startDate>2004</r3d:startDate>
|
||
|
|
<r3d:endDate></r3d:endDate>
|
||
|
|
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
|
||
|
|
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">202 Plant Sciences</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">20207 Plant Genetics</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">203 Zoology</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">20306 Animal Genetics, Cell and Developmental Biology</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
|
||
|
|
<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
|
||
|
|
<r3d:missionStatementURL>https://www.thegpm.org/gpm/privacy.html</r3d:missionStatementURL>
|
||
|
|
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
|
||
|
|
<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
|
||
|
|
<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
|
||
|
|
<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
|
||
|
|
<r3d:contentType contentTypeScheme="parse">Structured text</r3d:contentType>
|
||
|
|
<r3d:providerType>dataProvider</r3d:providerType>
|
||
|
|
<r3d:providerType>serviceProvider</r3d:providerType>
|
||
|
|
<r3d:keyword>Plant UniGene</r3d:keyword>
|
||
|
|
<r3d:keyword>X!Hunter</r3d:keyword>
|
||
|
|
<r3d:keyword>X!P3</r3d:keyword>
|
||
|
|
<r3d:keyword>bioinformatics</r3d:keyword>
|
||
|
|
<r3d:keyword>cow</r3d:keyword>
|
||
|
|
<r3d:keyword>enzymatic analysis</r3d:keyword>
|
||
|
|
<r3d:keyword>genomes</r3d:keyword>
|
||
|
|
<r3d:keyword>human</r3d:keyword>
|
||
|
|
<r3d:keyword>mouse</r3d:keyword>
|
||
|
|
<r3d:keyword>mutation (biology)</r3d:keyword>
|
||
|
|
<r3d:keyword>peptides</r3d:keyword>
|
||
|
|
<r3d:keyword>prokaryotes</r3d:keyword>
|
||
|
|
<r3d:keyword>proteins</r3d:keyword>
|
||
|
|
<r3d:keyword>rat</r3d:keyword>
|
||
|
|
<r3d:keyword>spectrum analysis</r3d:keyword>
|
||
|
|
<r3d:institution>
|
||
|
|
<r3d:institutionName language="eng">Beavis Informatics Ltd.</r3d:institutionName>
|
||
|
|
<r3d:institutionCountry>CAN</r3d:institutionCountry>
|
||
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
||
|
|
<r3d:responsibilityType>sponsoring</r3d:responsibilityType>
|
||
|
|
<r3d:responsibilityType>technical</r3d:responsibilityType>
|
||
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
||
|
|
<r3d:institutionURL></r3d:institutionURL>
|
||
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
||
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
||
|
|
<r3d:institutionContact>rbeavis@beavisinformatics.ca</r3d:institutionContact>
|
||
|
|
</r3d:institution>
|
||
|
|
<r3d:institution>
|
||
|
|
<r3d:institutionName language="eng">The Global Proteome Machine Organization Contributors</r3d:institutionName>
|
||
|
|
<r3d:institutionCountry>CAN</r3d:institutionCountry>
|
||
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
||
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
||
|
|
<r3d:institutionURL>https://www.thegpm.org/GPM/contributors.html</r3d:institutionURL>
|
||
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
||
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
||
|
|
</r3d:institution>
|
||
|
|
<r3d:policy>
|
||
|
|
<r3d:policyName>Privacy policy</r3d:policyName>
|
||
|
|
<r3d:policyURL>https://www.thegpm.org/gpm/privacy.html</r3d:policyURL>
|
||
|
|
</r3d:policy>
|
||
|
|
<r3d:databaseAccess>
|
||
|
|
<r3d:databaseAccessType>open</r3d:databaseAccessType>
|
||
|
|
</r3d:databaseAccess>
|
||
|
|
<r3d:dataAccess>
|
||
|
|
<r3d:dataAccessType>open</r3d:dataAccessType>
|
||
|
|
</r3d:dataAccess>
|
||
|
|
<r3d:dataLicense>
|
||
|
|
<r3d:dataLicenseName>other</r3d:dataLicenseName>
|
||
|
|
<r3d:dataLicenseURL>https://wiki.thegpm.org/wiki/FTP_site_layout_for_the_cHPP</r3d:dataLicenseURL>
|
||
|
|
</r3d:dataLicense>
|
||
|
|
<r3d:dataUpload>
|
||
|
|
<r3d:dataUploadType>restricted</r3d:dataUploadType>
|
||
|
|
<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
|
||
|
|
</r3d:dataUpload>
|
||
|
|
<r3d:software>
|
||
|
|
<r3d:softwareName>other</r3d:softwareName>
|
||
|
|
</r3d:software>
|
||
|
|
<r3d:versioning>yes</r3d:versioning>
|
||
|
|
<r3d:api apiType="FTP">ftp://ftp.thegpm.org/</r3d:api>
|
||
|
|
<r3d:api apiType="REST">https://wiki.thegpm.org/wiki/GPMDB_REST</r3d:api>
|
||
|
|
<r3d:pidSystem>none</r3d:pidSystem>
|
||
|
|
<r3d:citationGuidelineURL></r3d:citationGuidelineURL>
|
||
|
|
<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
|
||
|
|
<r3d:qualityManagement>unknown</r3d:qualityManagement>
|
||
|
|
<r3d:syndication syndicationType="RSS">https://www.thegpm.org/gpm_rss.xml</r3d:syndication>
|
||
|
|
<r3d:remarks>gpmDB Standard was designed to be a simplification and extension of the MIAPE scheme proposed by the PSI committee of HUPO</r3d:remarks>
|
||
|
|
<r3d:entryDate>2014-08-04</r3d:entryDate>
|
||
|
|
<r3d:lastUpdate>2019-12-02</r3d:lastUpdate>
|
||
|
|
</r3d:repository>
|
||
|
|
</r3d:re3data>
|