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389 Commits

Author SHA1 Message Date
Przemysław Jacewicz 5b459bcc47 [dhp-actionmanager] promoting spark job added 2020-04-01 18:49:08 +02:00
Przemysław Jacewicz e21bb89dbd [dhp-actionmanager] partitioning spark job added 2020-04-01 18:41:29 +02:00
Przemysław Jacewicz f9f7350bb9 [dhp-actionmanager] common package added with utility classes supporting hadoop and spark envs 2020-04-01 18:39:26 +02:00
Przemysław Jacewicz ad70c23b2e [dhp-actionmanager] pom updated 2020-04-01 18:36:00 +02:00
Przemysław Jacewicz 4e910a78d4 [dhp-workflows] spark 2 connection properties added 2020-04-01 18:29:26 +02:00
Claudio Atzori 1402eb1fe7 cleanup 2020-04-01 15:38:50 +02:00
Claudio Atzori 7061d07727 ActionSets migration serialize the output as plain text files instead of SequenceFiles 2020-04-01 14:58:22 +02:00
Claudio Atzori adcdd2d05e WIP: reimplementing the adjacency list construction process using spark Datasets 2020-04-01 14:56:57 +02:00
Sandro La Bruzzo 201d79021e Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-31 14:41:41 +02:00
Sandro La Bruzzo cd7416ae4c first implementation of incremental update of scholix index 2020-03-31 14:41:35 +02:00
przemek 9d1d18d4b9 Merge branch 'master' into przemyslawjacewicz_actionmanager_impl_prototype 2020-03-31 12:04:58 +02:00
Claudio Atzori 377e1ba840 [maven-release-plugin] prepare for next development iteration 2020-03-30 20:06:00 +02:00
Claudio Atzori 76d9315129 [maven-release-plugin] prepare release dhp-1.1.6 2020-03-30 20:05:56 +02:00
Claudio Atzori ef429010ee removed log file and job-override.properties 2020-03-30 20:00:58 +02:00
Claudio Atzori 0fbec69b82 use oozie prepare statement to cleanup working directories 2020-03-30 19:48:41 +02:00
Claudio Atzori 3af2b8d700 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-03-30 13:12:21 +02:00
Claudio Atzori f3f9affd49 allow dynamic executors to build XML records 2020-03-30 13:12:11 +02:00
Claudio Atzori 2e2d4c4c68 adjusted path to template resource 2020-03-30 13:11:49 +02:00
Miriam Baglioni dd011f4a95 to make them visible to Claudio 2020-03-30 10:55:47 +02:00
Miriam Baglioni b1af90a45f to make it visible to Claudio 2020-03-30 10:50:03 +02:00
Sandro La Bruzzo 62cc257e5c fixed step1 workflow 2020-03-27 17:07:34 +01:00
Sandro La Bruzzo 1a7a866861 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-27 15:11:48 +01:00
Sandro La Bruzzo 7cef698f36 reformat code 2020-03-27 15:11:34 +01:00
Claudio Atzori 1767dfaa3f method can be protected, it is meant to be used only in tests 2020-03-27 14:31:26 +01:00
Sandro La Bruzzo a4b6a51168 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-27 13:48:56 +01:00
Sandro La Bruzzo 15d9106b3f FIxed merge of dhp dedup 2020-03-27 13:48:44 +01:00
Claudio Atzori e196fff212 adjusted path for source resource in unit test 2020-03-27 13:45:10 +01:00
Sandro La Bruzzo 8c9a56a0c8 refactored package name 2020-03-27 13:19:33 +01:00
Sandro La Bruzzo 2bd2d6f202 Merge branch 'master' of code-repo.d3science.org:D-Net/dnet-hadoop 2020-03-27 13:16:36 +01:00
Sandro La Bruzzo a9935f80d4 refactor class name and workflow name for graph mapper, added javadoc 2020-03-27 13:16:24 +01:00
Michele Artini ae03948eed Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-27 11:47:07 +01:00
Michele Artini f6e86b44a6 tests 2020-03-27 11:46:37 +01:00
Michele Artini 408be3c632 test and fixed a problem with datacite namespaces 2020-03-27 11:44:50 +01:00
Claudio Atzori 673e744649 moved openaire specific implementations under dedicated package eu.dnetlib.dhp.oa 2020-03-27 10:42:17 +01:00
Claudio Atzori 098fabab3f reorganizing content under dhp-workflows/dhp-graph-mapper 2020-03-26 19:44:19 +01:00
Claudio Atzori 77c4294924 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-03-26 18:26:52 +01:00
Claudio Atzori 43cbcda7ef unit test for SparkGraphImporterJob 2020-03-26 18:26:40 +01:00
Sandro La Bruzzo e04da6d66a merged all oozie wf in one 2020-03-26 14:17:07 +01:00
Sandro La Bruzzo e71e001b58 commented test that doesn't work 2020-03-26 14:15:21 +01:00
Sandro La Bruzzo 0cd022ad6a merge with master 2020-03-26 14:08:29 +01:00
Claudio Atzori abcd3f5bf5 added sample data for unit tests 2020-03-26 11:12:52 +01:00
Sandro La Bruzzo d5f11e27be renamed wf 2020-03-26 09:49:23 +01:00
Sandro La Bruzzo 9a37ad0127 renamed modules 2020-03-26 09:46:46 +01:00
Sandro La Bruzzo a768226e52 updated generate scholix to generate json 2020-03-26 09:40:50 +01:00
Claudio Atzori 9dff4adbc3 dhp-graph-mapper workflow tests upgraded to junit5 2020-03-25 18:25:12 +01:00
Claudio Atzori cd7dc3e1ae dhp-dedup-openaire workflow tests upgraded to junit5 2020-03-25 18:04:23 +01:00
Claudio Atzori c0e825e713 dhp-aggregation workflow tests upgraded to junit5 2020-03-25 17:59:45 +01:00
Michele Artini ebe45003d9 fixed some junit packages 2020-03-25 16:45:03 +01:00
Michele Artini d9bfdcd607 updated poms 2020-03-25 16:31:12 +01:00
Michele Artini 120e823cd1 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-25 16:00:10 +01:00
Claudio Atzori 71ae7dd272 renamed module dnet-dedup to dnet-dedup-openaire 2020-03-25 15:57:09 +01:00
Michele Artini fd57722c69 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-25 15:56:49 +01:00
Claudio Atzori f441f823dd fixed path referencing a test resource file 2020-03-25 15:21:46 +01:00
Claudio Atzori 51d0c9bdd7 integrated changes from branch dedupTest 2020-03-25 15:15:41 +01:00
Claudio Atzori 36f8f2ea66 master set to 'yarn' in spark actions, removed path to rawSet from the dedup scan workflow 2020-03-25 14:16:06 +01:00
Michele Artini 2559299da4 tests 2020-03-25 12:25:00 +01:00
Claudio Atzori 2180cc4fe7 more fields included in result view definition 2020-03-25 11:21:46 +01:00
Claudio Atzori efb0b7d660 master set to 'yarn' in spark actions 2020-03-25 11:15:35 +01:00
Michele Artini 0fda2c3a30 some tests on db records 2020-03-25 09:43:58 +01:00
miconis 02320de371 minor changes 2020-03-24 17:43:51 +01:00
miconis 8e8b5e8f30 roots wf merged in scan wf 2020-03-24 17:40:58 +01:00
Miriam Baglioni 19d7f8b51d decommented execution for some of the result type for testing purposes 2020-03-24 16:49:46 +01:00
Miriam Baglioni ad24c8478f added missing parameter 2020-03-24 16:19:59 +01:00
Miriam Baglioni 46094a3eec bug fixing for implementation with dataset 2020-03-24 16:19:36 +01:00
Claudio Atzori 51ff68db66 Merge branch 'dedupTest' of https://code-repo.d4science.org/D-Net/dnet-hadoop into dedupTest 2020-03-24 11:18:19 +01:00
Claudio Atzori 1e869e7bed using method available from currently used library 2020-03-24 11:17:44 +01:00
miconis f0d72b76a8 package structure fixed 2020-03-24 10:51:40 +01:00
Claudio Atzori aaedbb1b8b WIP: dedup workflow, stage 2 2020-03-24 09:59:28 +01:00
Michele Artini e3760c7f39 fix a bug with organization countries 2020-03-24 08:43:56 +01:00
Claudio Atzori 8b0ba3d76a posprocessing script correctly run as hive2 action 2020-03-23 17:40:39 +01:00
miconis 93e2291291 minor changes 2020-03-23 17:17:56 +01:00
miconis f7890a90df implementation of the mechanism that checks the existance of a mergerel file 2020-03-23 17:13:30 +01:00
Miriam Baglioni ad712f2d79 added the needed variables in the config and read the variables in the workflow 2020-03-23 17:11:36 +01:00
Miriam Baglioni f1e9fe9752 changed implementation using dataset and query on hive 2020-03-23 17:11:00 +01:00
Miriam Baglioni f09cd1e911 removed unuseful variable in the configuration 2020-03-23 17:10:14 +01:00
Miriam Baglioni 9418e3d4fa read dataset from files instead of using hive tables 2020-03-23 17:09:27 +01:00
Miriam Baglioni a7bf037306 remove unused class 2020-03-23 14:36:43 +01:00
Miriam Baglioni 8ab8b6b0bf minor 2020-03-23 14:35:23 +01:00
Miriam Baglioni 30d58fd98c change the configuration of the workflow 2020-03-23 14:32:49 +01:00
Miriam Baglioni a440152b46 refactoring 2020-03-23 14:30:56 +01:00
Miriam Baglioni 47561f3597 changed the implementation from rdd to dataset got from sql queries (on hive) 2020-03-23 11:58:32 +01:00
miconis c20e179f5a structure of the workflows updated 2020-03-23 11:43:49 +01:00
Claudio Atzori 658d40ccbe WIP trying to use hive2 actions 2020-03-23 11:14:54 +01:00
Claudio Atzori ecb64e4998 Merge branch 'migration_wfs_regular_all_steps' 2020-03-23 08:57:01 +01:00
Michele Artini 15160032bd fixed a bug setting some organization fields 2020-03-23 08:39:14 +01:00
Claudio Atzori a4c52661a0 WIP: fixing dedup workflows 2020-03-20 19:17:24 +01:00
Claudio Atzori 6cb0a9bff0 dedup wf directory structure aligned with project commons 2020-03-20 16:48:14 +01:00
miconis e16e644faf implementation of the workflow for entity update and for relations update 2020-03-20 13:01:56 +01:00
przemek 638b78f96a Merge remote-tracking branch 'origin/master' into przemyslawjacewicz_actionmanager_impl_prototype 2020-03-19 15:12:56 +01:00
miconis 4e82a24af2 minor changes and implementation of the create connected components action 2020-03-19 15:01:07 +01:00
Claudio Atzori 36236dd1c1 action migration workflow produces eu.dnetlib.dhp.schema.action.AtomicAction(s) 2020-03-19 14:00:38 +01:00
Claudio Atzori a0ab15a64c need to stick on using guava:11.0.2 as it is the version used by the hadoop components (oozie client for sure). The last version (28.2-jre) breaks the oozie workflow submission 2020-03-19 13:58:58 +01:00
Sandro La Bruzzo 0594b92a6d implemented relation with dataset 2020-03-19 11:11:07 +01:00
miconis 679b5869e5 implementation of the lookup procedure to take dedup conf from the resource profiles 2020-03-18 17:41:56 +01:00
Claudio Atzori abe8fb69a2 added global properties, moved postprocessing script inside the oozie_app directory 2020-03-18 15:43:54 +01:00
miconis f32eae5ce9 implementation of the spark action for the simrel creation 2020-03-18 14:27:49 +01:00
Claudio Atzori c7e0730720 compress the output produced by migration steps 1 and 2 2020-03-18 09:34:57 +01:00
Claudio Atzori 2f11e37602 fixed expansion of path variables 2020-03-17 19:41:07 +01:00
Claudio Atzori 2795b0b096 no need to mkdir a the all_entities file 2020-03-17 17:22:14 +01:00
Claudio Atzori 19746ad308 when reuseContent, reset ${workingPath}/all_entities 2020-03-17 17:17:06 +01:00