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merged all oozie wf in one

This commit is contained in:
Sandro La Bruzzo 2020-03-26 14:17:07 +01:00
parent e71e001b58
commit e04da6d66a
4 changed files with 0 additions and 177 deletions
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30
dhp-workflows/dhp-dedup-scholexplorer/src/main/resources/eu/dnetlib/dhp/dedup/propagaterels/oozie_app/config-default.xml
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@ -1,30 +0,0 @@
<configuration>
<property>
<name>jobTracker</name>
<value>yarnRM</value>
</property>
<property>
<name>nameNode</name>
<value>hdfs://nameservice1</value>
</property>
<property>
<name>oozie.use.system.libpath</name>
<value>true</value>
</property>
<property>
<name>oozie.action.sharelib.for.spark</name>
<value>spark2</value>
</property>
<property>
<name>hive_metastore_uris</name>
<value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
</property>
<property>
<name>hive_jdbc_url</name>
<value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000</value>
</property>
<property>
<name>hive_db_name</name>
<value>openaire</value>
</property>
</configuration>

52
dhp-workflows/dhp-dedup-scholexplorer/src/main/resources/eu/dnetlib/dhp/dedup/propagaterels/oozie_app/workflow.xml
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<workflow-app name="Dedup Entities" xmlns="uri:oozie:workflow:0.5">
<parameters>
<property>
<name>relationPath</name>
<description>the source path</description>
</property>
<property>
<name>mergeRelPath</name>
<description>the target path</description>
</property>
<property>
<name>sparkDriverMemory</name>
<description>memory for driver process</description>
</property>
<property>
<name>sparkExecutorMemory</name>
<description>memory for individual executor</description>
</property>
</parameters>
<start to="PropagateRelation"/>
<kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>
<action name="PropagateRelation">
<spark xmlns="uri:oozie:spark-action:0.2">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<master>yarn-cluster</master>
<mode>cluster</mode>
<name>Propagate Dedup Relations</name>
<class>eu.dnetlib.dedup.SparkPropagateRelationsJob</class>
<jar>dhp-dedup-${projectVersion}.jar</jar>
<spark-opts>
--executor-memory ${sparkExecutorMemory}
--driver-memory=${sparkDriverMemory}
--num-executors 100
--conf spark.yarn.jars="hdfs://hadoop-rm1.garr-pa1.d4science.org:8020/user/oozie/share/lib/lib_20180405103059/spark2"
</spark-opts>
<arg>-mt</arg><arg>yarn-cluster</arg>
<arg>--mergeRelPath</arg><arg>${mergeRelPath}</arg>
<arg>--relationPath</arg><arg>${relationPath}</arg>
</spark>
<ok to="End"/>
<error to="Kill"/>
</action>
<end name="End"/>
</workflow-app>

30
dhp-workflows/dhp-dedup-scholexplorer/src/main/resources/eu/dnetlib/dhp/dedup/update/entity/oozie_app/config-default.xml
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@ -1,30 +0,0 @@
<configuration>
<property>
<name>jobTracker</name>
<value>yarnRM</value>
</property>
<property>
<name>nameNode</name>
<value>hdfs://nameservice1</value>
</property>
<property>
<name>oozie.use.system.libpath</name>
<value>true</value>
</property>
<property>
<name>oozie.action.sharelib.for.spark</name>
<value>spark2</value>
</property>
<property>
<name>hive_metastore_uris</name>
<value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
</property>
<property>
<name>hive_db_name</name>
<value>openaire</value>
</property>
<property>
<name>master</name>
<value>yarn</value>
</property>
</configuration>

65
dhp-workflows/dhp-dedup-scholexplorer/src/main/resources/eu/dnetlib/dhp/dedup/update/entity/oozie_app/workflow.xml
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@ -1,65 +0,0 @@
<workflow-app name="Dedup Entities" xmlns="uri:oozie:workflow:0.5">
<parameters>
<property>
<name>entity</name>
<description>the entity that should be processed</description>
</property>
<property>
<name>entityPath</name>
<description>the source path</description>
</property>
<property>
<name>mergeRelPath</name>
<description>the target path</description>
</property>
<property>
<name>dedupRecordPath</name>
<description>the target path</description>
</property>
<property>
<name>master</name>
<description>the target path</description>
</property>
<property>
<name>sparkDriverMemory</name>
<description>memory for driver process</description>
</property>
<property>
<name>sparkExecutorMemory</name>
<description>memory for individual executor</description>
</property>
</parameters>
<start to="updateEntity"/>
<kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>
<action name="updateEntity">
<spark xmlns="uri:oozie:spark-action:0.2">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<master>${master}</master>
<mode>cluster</mode>
<name>Update ${entity} and add DedupRecord</name>
<class>eu.dnetlib.dedup.SparkUpdateEntityJob</class>
<jar>dhp-dedup-${projectVersion}.jar</jar>
<spark-opts>
--executor-memory ${sparkExecutorMemory}
--driver-memory=${sparkDriverMemory}
--num-executors 100
--conf spark.yarn.jars="hdfs://hadoop-rm1.garr-pa1.d4science.org:8020/user/oozie/share/lib/lib_20180405103059/spark2"
</spark-opts>
<arg>-mt</arg><arg>${master}</arg>
<arg>--entityPath</arg><arg>${entityPath}</arg>
<arg>--mergeRelPath</arg><arg>${mergeRelPath}</arg>
<arg>--entity</arg><arg>${entity}</arg>
<arg>--dedupRecordPath</arg><arg>${dedupRecordPath}</arg>
</spark>
<ok to="End"/>
<error to="Kill"/>
</action>
<end name="End"/>
</workflow-app>