From 0fd0c7d72520f97322504f405496358a3778ecdd Mon Sep 17 00:00:00 2001 From: miconis Date: Fri, 22 May 2020 17:24:57 +0200 Subject: [PATCH 01/10] reimplementation of the sim between two authors. now it takes into account both name and surname. threshold incremented to 1.0 if the name is too short --- .../eu/dnetlib/dhp/oa/dedup/AuthorMerger.java | 41 +++++++++++-------- .../dhp/oa/dedup/EntityMergerTest.java | 13 ++++++ .../dhp/dedup/json/publication_merge2.json | 4 ++ 3 files changed, 40 insertions(+), 18 deletions(-) create mode 100644 dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge2.json diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java index 43df19f8a4..5e63c4b656 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java @@ -20,12 +20,7 @@ public class AuthorMerger { public static List merge(List> authors) { - authors.sort(new Comparator>() { - @Override - public int compare(List o1, List o2) { - return -Integer.compare(countAuthorsPids(o1), countAuthorsPids(o2)); - } - }); + authors.sort((o1, o2) -> -Integer.compare(countAuthorsPids(o1), countAuthorsPids(o2))); List author = new ArrayList<>(); @@ -86,20 +81,28 @@ public class AuthorMerger { .stream() .map(ba -> new Tuple2<>(sim(ba, a._2()), ba)) .max(Comparator.comparing(Tuple2::_1)); - if (simAuthor.isPresent() && simAuthor.get()._1() > THRESHOLD) { - Author r = simAuthor.get()._2(); - if (r.getPid() == null) { - r.setPid(new ArrayList<>()); + + if(simAuthor.isPresent()) { + double th = THRESHOLD; + //increase the threshold if the surname is too short + if (simAuthor.get()._2().getSurname() != null && simAuthor.get()._2().getSurname().length()<=3) + th = 0.99; + + if (simAuthor.get()._1() > th) { + Author r = simAuthor.get()._2(); + if (r.getPid() == null) { + r.setPid(new ArrayList<>()); + } + r.getPid().add(a._1()); } - r.getPid().add(a._1()); } }); } public static String pidToComparableString(StructuredProperty pid) { - return (pid.getQualifier() != null - ? pid.getQualifier().getClassid() != null ? pid.getQualifier().getClassid().toLowerCase() : "" - : "") + (pid.getValue() != null ? pid.getValue().toLowerCase() : ""); + return (pid.getQualifier() != null ? + pid.getQualifier().getClassid() != null ? pid.getQualifier().getClassid().toLowerCase() : "" : "") + + (pid.getValue() != null ? pid.getValue().toLowerCase() : ""); } public static int countAuthorsPids(List authors) { @@ -120,12 +123,14 @@ public class AuthorMerger { final Person pa = parse(a); final Person pb = parse(b); + //if both are accurate (e.g. they have name and surname) if (pa.isAccurate() & pb.isAccurate()) { - return new JaroWinkler() - .score(normalize(pa.getSurnameString()), normalize(pb.getSurnameString())); + return + new JaroWinkler().score(normalize(pa.getSurnameString()), normalize(pb.getSurnameString()))*0.5 + + new JaroWinkler().score(normalize(pa.getNameString()), normalize(pb.getNameString()))*0.5; } else { - return new JaroWinkler() - .score(normalize(pa.getNormalisedFullname()), normalize(pb.getNormalisedFullname())); + return + new JaroWinkler().score(normalize(pa.getNormalisedFullname()), normalize(pb.getNormalisedFullname())); } } diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java index 0a3bf62ea8..55879030be 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java +++ b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java @@ -21,6 +21,7 @@ import scala.Tuple2; public class EntityMergerTest implements Serializable { List> publications; + List> publications2; String testEntityBasePath; DataInfo dataInfo; @@ -36,6 +37,7 @@ public class EntityMergerTest implements Serializable { .getAbsolutePath(); publications = readSample(testEntityBasePath + "/publication_merge.json", Publication.class); + publications2 = readSample(testEntityBasePath + "/publication_merge2.json", Publication.class); pub_top = getTopPub(publications); @@ -90,6 +92,17 @@ public class EntityMergerTest implements Serializable { assertEquals(AuthorMerger.countAuthorsPids(pub_merged.getAuthor()), 4); } + @Test + public void publicationMergerTest2() throws InstantiationException, IllegalAccessException, IOException { + + Publication pub_merged = DedupRecordFactory + .entityMerger(dedupId, publications2.iterator(), 0, dataInfo, Publication.class); + + assertEquals(pub_merged.getAuthor().size(), 27); + // insert assertions here + + } + public DataInfo setDI() { DataInfo dataInfo = new DataInfo(); dataInfo.setTrust("0.9"); diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge2.json b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge2.json new file mode 100644 index 0000000000..a7937c2873 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge2.json @@ -0,0 +1,4 @@ +{"id":"50|doajarticles::842fa3b99fcdccafb4d5c8a815f56efa","dateofcollection":"2020-04-06T12:22:31.216Z","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main 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Neoplasms"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Herpesviridae"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Hyperplasia"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Diseases of the genitourinary system. Urology"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"RC870-923"}],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Purpose: Previously, we reported the presence of virus-encoded microRNAs (miRNAs) in the urine of prostate cancer (CaP) patients. In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue. Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons. Results: Real-time reverse transcription-PCR results revealed significantly higher expression of hsv1-miR-H18 and hsv2-miRH9- 5p in surrounding noncancerous and CaP tissues than that in BPH tissue (each comparison, P<0.001). Of note, these miRNA were expressed equivalently in the CaP tissues and surrounding noncancerous tissues. Moreover, immunocytochemistry clearly demonstrated a significant enrichment of both hsv1-miR-H18 and hsv2-miR-H9 beacon-labeled cells in CaP and surrounding noncancerous tissue compared to that in BPH tissue (each comparison, P<0.05 for hsv1-miR-H18 and hsv2- miR-H9). Conclusions: These results suggest that increased expression of hsv1-miR-H18 and hsv2-miR-H95p might be associated with tumorigenesis in the prostate. Further studies will be required to elucidate the role of these miRNAs with respect to CaP and herpes viral infections."}],"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"embargoenddate":null,"resourcetype":null,"context":[],"instance":[{"accessright":{"classid":"OPEN","classname":"Open 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In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue. Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons. Results: Real-time reverse transcription-PCR results revealed significantly higher expression of hsv1-miR-H18 and hsv2-miRH9- 5p in surrounding noncancerous and CaP tissues than that in BPH tissue (each comparison, P<0.001). Of note, these miRNA were expressed equivalently in the CaP tissues and surrounding noncancerous tissues. Moreover, immunocytochemistry clearly demonstrated a significant enrichment of both hsv1-miR-H18 and hsv2-miR-H9 beacon-labeled cells in CaP and surrounding noncancerous tissue compared to that in BPH tissue (each comparison, P<0.05 for hsv1-miR-H18 and hsv2- miR-H9). Conclusions: These results suggest that increased expression of hsv1-miR-H18 and hsv2-miR-H95p might be associated with tumorigenesis in the prostate. Further studies will be required to elucidate the role of these miRNAs with respect to CaP and herpes viral infections."}],"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"embargoenddate":null,"resourcetype":null,"context":[],"instance":[{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357","value":"PubMed 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In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue.","dateofcollection":"false\u0004\u0004false\u0004false\u0004\u0005\u0005\u0005\u0004\u00032016-6-30","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":null,"inferred":null,"invisible":null,"provenanceaction":null,"trust":null},"qualifier":{"classid":"","classname":null,"schemeid":null,"schemename":null},"value":"false"},{"dataInfo":{"deletedbyinference":null,"inferenceprovenance":null,"inferred":null,"invisible":null,"provenanceaction":null,"trust":null},"qualifier":null,"value":null}],"publisher":{"dataInfo":{"deletedbyinference":null,"inferenceprovenance":null,"inferred":null,"invisible":null,"provenanceaction":null,"trust":null},"value":""},"bestaccessright":{"classid":"","classname":null,"schemeid":null,"schemename":null},"dataInfo":{"deletedbyinference":null,"inferenceprovenance":"UNKNOWN\u0005not available\u0005dnet:access_modes\u0005dnet:access_modes\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u000510|openaire____::081b82f96300b6a6e3d282bad31cb6e2\u0005Crossref\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005\u0004\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u000510|openaire____::55045bd2a65019fd8e6741a755395c8c\u0005Unknown Repository\u00040001\u0005Article\u0005dnet:publication_resource\u0005dnet:publication_resource\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005\u0004http://einj.org/upload/pdf/inj-1632552-276.pdf","inferred":null,"invisible":null,"provenanceaction":{"classid":"UNKNOWN\u0005not available\u0005dnet:access_modes\u0005dnet:access_modes","classname":"false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u000510|openaire____::5f532a3fc4f1ea403f37070f59a7a53a\u0005Microsoft Academic Graph","schemeid":"false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005","schemename":""},"trust":"RESTRICTED\u0005Restricted\u0005dnet:access_modes\u0005dnet:access_modes\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u000510|openaire____::081b82f96300b6a6e3d282bad31cb6e2\u0005Crossref\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005\u0004\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u000510|doajarticles::52db9a4f8e176f6e8e1d9f0c1e0a2de0\u0005International Neurourology Journal\u00040001\u0005Article\u0005dnet:publication_resource\u0005dnet:publication_resource\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005\u0004false\u0006\u0006false\u0006false\u0006\u0007\u0007\u0007\u0006\u0005\u0004http://dx.doi.org/10.5213/inj.1632552.276"},"collectedfrom":null,"pid":null,"author":null,"resulttype":null,"language":null,"country":null,"subject":null,"description":null,"dateofacceptance":null,"embargoenddate":null,"resourcetype":null,"context":null,"instance":null} \ No newline at end of file From 7181807e644ed8db9765aa45a7b4b3ff65d49a60 Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Sat, 23 May 2020 09:51:48 +0200 Subject: [PATCH 02/10] code formatting --- .../eu/dnetlib/dhp/oa/dedup/AuthorMerger.java | 25 ++++++++++--------- .../dhp/oa/dedup/EntityMergerTest.java | 2 +- 2 files changed, 14 insertions(+), 13 deletions(-) diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java index 5e63c4b656..ee5fd51656 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java @@ -82,10 +82,11 @@ public class AuthorMerger { .map(ba -> new Tuple2<>(sim(ba, a._2()), ba)) .max(Comparator.comparing(Tuple2::_1)); - if(simAuthor.isPresent()) { + if (simAuthor.isPresent()) { double th = THRESHOLD; - //increase the threshold if the surname is too short - if (simAuthor.get()._2().getSurname() != null && simAuthor.get()._2().getSurname().length()<=3) + // increase the threshold if the surname is too short + if (simAuthor.get()._2().getSurname() != null + && simAuthor.get()._2().getSurname().length() <= 3) th = 0.99; if (simAuthor.get()._1() > th) { @@ -100,9 +101,10 @@ public class AuthorMerger { } public static String pidToComparableString(StructuredProperty pid) { - return (pid.getQualifier() != null ? - pid.getQualifier().getClassid() != null ? pid.getQualifier().getClassid().toLowerCase() : "" : "") - + (pid.getValue() != null ? pid.getValue().toLowerCase() : ""); + return (pid.getQualifier() != null + ? pid.getQualifier().getClassid() != null ? pid.getQualifier().getClassid().toLowerCase() : "" + : "") + + (pid.getValue() != null ? pid.getValue().toLowerCase() : ""); } public static int countAuthorsPids(List authors) { @@ -123,14 +125,13 @@ public class AuthorMerger { final Person pa = parse(a); final Person pb = parse(b); - //if both are accurate (e.g. they have name and surname) + // if both are accurate (e.g. they have name and surname) if (pa.isAccurate() & pb.isAccurate()) { - return - new JaroWinkler().score(normalize(pa.getSurnameString()), normalize(pb.getSurnameString()))*0.5 - + new JaroWinkler().score(normalize(pa.getNameString()), normalize(pb.getNameString()))*0.5; + return new JaroWinkler().score(normalize(pa.getSurnameString()), normalize(pb.getSurnameString())) * 0.5 + + new JaroWinkler().score(normalize(pa.getNameString()), normalize(pb.getNameString())) * 0.5; } else { - return - new JaroWinkler().score(normalize(pa.getNormalisedFullname()), normalize(pb.getNormalisedFullname())); + return new JaroWinkler() + .score(normalize(pa.getNormalisedFullname()), normalize(pb.getNormalisedFullname())); } } diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java index 55879030be..144d5d49a0 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java +++ b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java @@ -96,7 +96,7 @@ public class EntityMergerTest implements Serializable { public void publicationMergerTest2() throws InstantiationException, IllegalAccessException, IOException { Publication pub_merged = DedupRecordFactory - .entityMerger(dedupId, publications2.iterator(), 0, dataInfo, Publication.class); + .entityMerger(dedupId, publications2.iterator(), 0, dataInfo, Publication.class); assertEquals(pub_merged.getAuthor().size(), 27); // insert assertions here From 6b56cae57db666e79866c627fa1d95cf080c30fe Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Sat, 23 May 2020 09:57:39 +0200 Subject: [PATCH 03/10] added mapping for bestaccessrights --- .../dhp/schema/common/LicenseComparator.java | 69 +++++++++++++++++++ .../raw/AbstractMdRecordToOafMapper.java | 52 +++++++++----- .../dnetlib/dhp/oa/graph/raw/MappersTest.java | 21 +++++- 3 files changed, 124 insertions(+), 18 deletions(-) create mode 100644 dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/LicenseComparator.java diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/LicenseComparator.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/LicenseComparator.java new file mode 100644 index 0000000000..1fb8421804 --- /dev/null +++ b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/LicenseComparator.java @@ -0,0 +1,69 @@ + +package eu.dnetlib.dhp.schema.common; + +import eu.dnetlib.dhp.schema.oaf.Qualifier; + +import java.util.Comparator; + +public class LicenseComparator implements Comparator { + + @Override + public int compare(Qualifier left, Qualifier right) { + + if (left == null && right == null) + return 0; + if (left == null) + return 1; + if (right == null) + return -1; + + String lClass = left.getClassid(); + String rClass = right.getClassid(); + + if (lClass.equals(rClass)) + return 0; + + if (lClass.equals("OPEN SOURCE")) + return -1; + if (rClass.equals("OPEN SOURCE")) + return 1; + + if (lClass.equals("OPEN")) + return -1; + if (rClass.equals("OPEN")) + return 1; + + if (lClass.equals("6MONTHS")) + return -1; + if (rClass.equals("6MONTHS")) + return 1; + + if (lClass.equals("12MONTHS")) + return -1; + if (rClass.equals("12MONTHS")) + return 1; + + if (lClass.equals("EMBARGO")) + return -1; + if (rClass.equals("EMBARGO")) + return 1; + + if (lClass.equals("RESTRICTED")) + return -1; + if (rClass.equals("RESTRICTED")) + return 1; + + if (lClass.equals("CLOSED")) + return -1; + if (rClass.equals("CLOSED")) + return 1; + + if (lClass.equals("UNKNOWN")) + return -1; + if (rClass.equals("UNKNOWN")) + return 1; + + // Else (but unlikely), lexicographical ordering will do. + return lClass.compareTo(rClass); + } +} diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java index c4639eb44a..46fff2f425 100644 --- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java +++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java @@ -10,24 +10,12 @@ import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.listFields; import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.oaiIProvenance; import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.qualifier; import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.structuredProperty; -import static eu.dnetlib.dhp.schema.common.ModelConstants.DATASET_DEFAULT_RESULTTYPE; -import static eu.dnetlib.dhp.schema.common.ModelConstants.DNET_PID_TYPES; -import static eu.dnetlib.dhp.schema.common.ModelConstants.IS_PRODUCED_BY; -import static eu.dnetlib.dhp.schema.common.ModelConstants.ORP_DEFAULT_RESULTTYPE; -import static eu.dnetlib.dhp.schema.common.ModelConstants.OUTCOME; -import static eu.dnetlib.dhp.schema.common.ModelConstants.PRODUCES; -import static eu.dnetlib.dhp.schema.common.ModelConstants.PUBLICATION_DEFAULT_RESULTTYPE; -import static eu.dnetlib.dhp.schema.common.ModelConstants.REPOSITORY_PROVENANCE_ACTIONS; -import static eu.dnetlib.dhp.schema.common.ModelConstants.RESULT_PROJECT; -import static eu.dnetlib.dhp.schema.common.ModelConstants.SOFTWARE_DEFAULT_RESULTTYPE; +import static eu.dnetlib.dhp.schema.common.ModelConstants.*; +import static eu.dnetlib.dhp.schema.common.ModelConstants.DNET_ACCESS_MODES; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Date; -import java.util.HashMap; -import java.util.List; -import java.util.Map; +import java.util.*; +import eu.dnetlib.dhp.schema.common.LicenseComparator; import org.apache.commons.lang3.StringUtils; import org.dom4j.Document; import org.dom4j.DocumentFactory; @@ -285,7 +273,9 @@ public abstract class AbstractMdRecordToOafMapper { r.setCoverage(prepareCoverages(doc, info)); r.setContext(prepareContexts(doc, info)); r.setExternalReference(new ArrayList<>()); // NOT PRESENT IN MDSTORES - r.setInstance(prepareInstances(doc, info, collectedFrom, hostedBy)); + final List instances = prepareInstances(doc, info, collectedFrom, hostedBy); + r.setInstance(instances); + r.setBestaccessright(getBestAccessRights(instances)); } private List prepareContexts(final Document doc, final DataInfo info) { @@ -368,6 +358,34 @@ public abstract class AbstractMdRecordToOafMapper { protected abstract Field prepareDatasetStorageDate(Document doc, DataInfo info); + protected static Qualifier getBestAccessRights(List instanceList) { + if (instanceList != null) { + final Optional min = instanceList + .stream() + .map(i -> i.getAccessright()) + .min(new LicenseComparator()); + + final Qualifier rights = min.isPresent() ? min.get() : new Qualifier(); + + if (StringUtils.isBlank(rights.getClassid())) { + rights.setClassid(UNKNOWN); + } + if (StringUtils.isBlank(rights.getClassname()) + || UNKNOWN.equalsIgnoreCase(rights.getClassname())) { + rights.setClassname(NOT_AVAILABLE); + } + if (StringUtils.isBlank(rights.getSchemeid())) { + rights.setSchemeid(DNET_ACCESS_MODES); + } + if (StringUtils.isBlank(rights.getSchemename())) { + rights.setSchemename(DNET_ACCESS_MODES); + } + + return rights; + } + return null; + } + private Journal prepareJournal(final Document doc, final DataInfo info) { final Node n = doc.selectSingleNode("//oaf:journal"); if (n != null) { diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java index 631e7235ec..e9ee2dabe9 100644 --- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java +++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java @@ -85,8 +85,18 @@ public class MappersTest { assertTrue(p.getSubject().size() > 0); assertTrue(StringUtils.isNotBlank(p.getJournal().getIssnOnline())); assertTrue(StringUtils.isNotBlank(p.getJournal().getName())); - assertTrue(p.getInstance().size() > 0); + assertNotNull(p.getInstance()); + assertTrue(p.getInstance().size() > 0); + p.getInstance() + .stream() + .forEach(i -> { + assertNotNull(i.getAccessright()); + assertEquals("OPEN", i.getAccessright().getClassid()); + }); + + assertNotNull(p.getBestaccessright()); + assertEquals("OPEN", p.getBestaccessright().getClassid()); assertValidId(r1.getSource()); assertValidId(r1.getTarget()); assertValidId(r2.getSource()); @@ -164,6 +174,15 @@ public class MappersTest { assertTrue(d.getContext().size() > 0); assertTrue(d.getContext().get(0).getId().length() > 0); + assertNotNull(d.getInstance()); + assertTrue(d.getInstance().size() > 0); + d.getInstance() + .stream() + .forEach(i -> { + assertNotNull(i.getAccessright()); + assertEquals("OPEN", i.getAccessright().getClassid()); + }); + assertValidId(r1.getSource()); assertValidId(r1.getTarget()); assertValidId(r2.getSource()); From de108f54d6f3ac33a57db8d5737d10557d9637d2 Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Sat, 23 May 2020 10:21:19 +0200 Subject: [PATCH 04/10] code formatting --- .../dhp/schema/common/LicenseComparator.java | 4 +-- .../raw/AbstractMdRecordToOafMapper.java | 10 +++---- .../dnetlib/dhp/oa/graph/raw/MappersTest.java | 26 ++++++++++--------- 3 files changed, 21 insertions(+), 19 deletions(-) diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/LicenseComparator.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/LicenseComparator.java index 1fb8421804..db523ad1ac 100644 --- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/LicenseComparator.java +++ b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/LicenseComparator.java @@ -1,10 +1,10 @@ package eu.dnetlib.dhp.schema.common; -import eu.dnetlib.dhp.schema.oaf.Qualifier; - import java.util.Comparator; +import eu.dnetlib.dhp.schema.oaf.Qualifier; + public class LicenseComparator implements Comparator { @Override diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java index 46fff2f425..5c89d5096f 100644 --- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java +++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java @@ -15,13 +15,13 @@ import static eu.dnetlib.dhp.schema.common.ModelConstants.DNET_ACCESS_MODES; import java.util.*; -import eu.dnetlib.dhp.schema.common.LicenseComparator; import org.apache.commons.lang3.StringUtils; import org.dom4j.Document; import org.dom4j.DocumentFactory; import org.dom4j.DocumentHelper; import org.dom4j.Node; +import eu.dnetlib.dhp.schema.common.LicenseComparator; import eu.dnetlib.dhp.schema.oaf.Author; import eu.dnetlib.dhp.schema.oaf.Context; import eu.dnetlib.dhp.schema.oaf.DataInfo; @@ -361,9 +361,9 @@ public abstract class AbstractMdRecordToOafMapper { protected static Qualifier getBestAccessRights(List instanceList) { if (instanceList != null) { final Optional min = instanceList - .stream() - .map(i -> i.getAccessright()) - .min(new LicenseComparator()); + .stream() + .map(i -> i.getAccessright()) + .min(new LicenseComparator()); final Qualifier rights = min.isPresent() ? min.get() : new Qualifier(); @@ -371,7 +371,7 @@ public abstract class AbstractMdRecordToOafMapper { rights.setClassid(UNKNOWN); } if (StringUtils.isBlank(rights.getClassname()) - || UNKNOWN.equalsIgnoreCase(rights.getClassname())) { + || UNKNOWN.equalsIgnoreCase(rights.getClassname())) { rights.setClassname(NOT_AVAILABLE); } if (StringUtils.isBlank(rights.getSchemeid())) { diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java index e9ee2dabe9..b9da9fb297 100644 --- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java +++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java @@ -88,12 +88,13 @@ public class MappersTest { assertNotNull(p.getInstance()); assertTrue(p.getInstance().size() > 0); - p.getInstance() - .stream() - .forEach(i -> { - assertNotNull(i.getAccessright()); - assertEquals("OPEN", i.getAccessright().getClassid()); - }); + p + .getInstance() + .stream() + .forEach(i -> { + assertNotNull(i.getAccessright()); + assertEquals("OPEN", i.getAccessright().getClassid()); + }); assertNotNull(p.getBestaccessright()); assertEquals("OPEN", p.getBestaccessright().getClassid()); @@ -176,12 +177,13 @@ public class MappersTest { assertNotNull(d.getInstance()); assertTrue(d.getInstance().size() > 0); - d.getInstance() - .stream() - .forEach(i -> { - assertNotNull(i.getAccessright()); - assertEquals("OPEN", i.getAccessright().getClassid()); - }); + d + .getInstance() + .stream() + .forEach(i -> { + assertNotNull(i.getAccessright()); + assertEquals("OPEN", i.getAccessright().getClassid()); + }); assertValidId(r1.getSource()); assertValidId(r1.getTarget()); From 0ab0206b4d42452a99625043ddecdc75f474d4df Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Mon, 25 May 2020 10:11:41 +0200 Subject: [PATCH 05/10] removed null objects from flattened Field in mergeLists --- .../src/main/java/eu/dnetlib/dhp/schema/oaf/OafEntity.java | 1 + 1 file changed, 1 insertion(+) diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OafEntity.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OafEntity.java index 09742748d7..2823ee49dd 100644 --- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OafEntity.java +++ b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OafEntity.java @@ -106,6 +106,7 @@ public abstract class OafEntity extends Oaf implements Serializable { .stream(lists) .filter(Objects::nonNull) .flatMap(List::stream) + .filter(Objects::nonNull) .distinct() .collect(Collectors.toList()); } From 4b34872b44701581d5378c13765483e6d42fd77f Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Mon, 25 May 2020 10:14:15 +0200 Subject: [PATCH 06/10] using Objects.equals to check Field equivalence --- dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Field.java | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Field.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Field.java index 1a85c6842d..8358bc4b37 100644 --- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Field.java +++ b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Field.java @@ -2,6 +2,7 @@ package eu.dnetlib.dhp.schema.oaf; import java.io.Serializable; +import java.util.Objects; public class Field implements Serializable { @@ -39,6 +40,6 @@ public class Field implements Serializable { if (getClass() != obj.getClass()) return false; Field other = (Field) obj; - return getValue().equals(other.getValue()); + return Objects.equals(getValue(), other.getValue()); } } From da1e5cf55703dd318f33cae1b780111a3179f67d Mon Sep 17 00:00:00 2001 From: miconis Date: Mon, 25 May 2020 18:02:57 +0200 Subject: [PATCH 07/10] implementation of the result title merge. main title with higher trust, distinct between the others --- .../eu/dnetlib/dhp/schema/oaf/Result.java | 28 +++++++++++++++++++ .../dhp/oa/dedup/EntityMergerTest.java | 10 ++++++- .../dhp/dedup/json/publication_merge.json | 2 +- 3 files changed, 38 insertions(+), 2 deletions(-) diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Result.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Result.java index 711b1ca681..213a585a8c 100644 --- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Result.java +++ b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Result.java @@ -244,7 +244,25 @@ public class Result extends OafEntity implements Serializable { subject = mergeLists(subject, r.getSubject()); + //merge title lists: main title with higher trust and distinct between the others + StructuredProperty baseMainTitle = null; + if(title != null) { + baseMainTitle = getMainTitle(title); + title.remove(baseMainTitle); + } + + StructuredProperty newMainTitle = null; + if(r.getTitle() != null) { + newMainTitle = getMainTitle(r.getTitle()); + r.getTitle().remove(newMainTitle); + } + + if (newMainTitle != null && compareTrust(this, r) < 0 ) + baseMainTitle = newMainTitle; + title = mergeLists(title, r.getTitle()); + if (title != null && baseMainTitle != null) + title.add(baseMainTitle); relevantdate = mergeLists(relevantdate, r.getRelevantdate()); @@ -294,4 +312,14 @@ public class Result extends OafEntity implements Serializable { } return a.size() > b.size() ? a : b; } + + private StructuredProperty getMainTitle(List titles) { + //need to check if the list of titles contains more than 1 main title? (in that case, we should chose which main title select in the list) + for (StructuredProperty title: titles) { + if (title.getQualifier() != null && title.getQualifier().getClassid() != null) + if (title.getQualifier().getClassid().equals("main title")) + return title; + } + return null; + } } diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java index 144d5d49a0..f4b2c22522 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java +++ b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java @@ -90,10 +90,18 @@ public class EntityMergerTest implements Serializable { // verify authors assertEquals(pub_merged.getAuthor().size(), 9); assertEquals(AuthorMerger.countAuthorsPids(pub_merged.getAuthor()), 4); + + //verify title + int count = 0; + for (StructuredProperty title: pub_merged.getTitle()){ + if (title.getQualifier().getClassid().equals("main title")) + count++; + } + assertEquals(count, 1); } @Test - public void publicationMergerTest2() throws InstantiationException, IllegalAccessException, IOException { + public void publicationMergerTest2() throws InstantiationException, IllegalAccessException { Publication pub_merged = DedupRecordFactory .entityMerger(dedupId, publications2.iterator(), 0, dataInfo, Publication.class); diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge.json b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge.json index 015f9294a3..28548c5322 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge.json +++ b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge.json @@ -1,3 +1,3 @@ {"context": [], 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"inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "lastupdatetimestamp": 0, "author": [{"surname": "Zeuner", "name": "Kirsten E.", "pid": [], "rank": 1, "affiliation": [], "fullname": "Zeuner, Kirsten E."}, {"surname": "Knutzen", "name": "Arne", "pid": [], "rank": 2, "affiliation": [], "fullname": "Knutzen, Arne"}, {"surname": "Granert", "name": "Oliver", "pid": [{"qualifier": {"classid": "ORCID", "classname": "ORCID"}, "value": "0000-0002-0656-1023"}, {"qualifier": {"classid": "pubmed", "classname": "pubmed"}, "value": "pubmed.it"}], "rank": 3, "affiliation": [], "fullname": "Granert, Oliver"}, {"surname": "Sablowsky", "name": "Simone", "pid": [{"qualifier": {"classid": "id", "classname": "id"}, "value": "12345678"}], "rank": 4, "affiliation": [], "fullname": "Sablowsky, Simone"}, {"surname": "Go\\u0308tz", "name": "Julia", "pid": [], "rank": 5, "affiliation": [], "fullname": "G\\u00f6tz, Julia"}, {"surname": "Wolff", "name": "Stephan", "pid": [], "rank": 6, "affiliation": [], "fullname": "Wolff, Stephan"}, {"surname": "Jansen", "name": "Olav", "pid": [{"qualifier": {"classid": "ORCID", "classname": "ORCID"}, "value": "0000-0000-0656-1023"},{"qualifier": {"classid": "id", "classname": "id"}, "value": "987654321"}], "rank": 7, "affiliation": [], "fullname": "Jansen, Olav"}, {"surname": "Dressler", "name": "Dirk", "pid": [], "rank": 8, "affiliation": [], "fullname": "Dressler, Dirk"}, {"surname": "Schneider", "name": "Susanne A.", "pid": [], "rank": 9, "affiliation": [], "fullname": "Schneider, Susanne A."}], "source": [], "dateofcollection": "2020-03-10T15:05:38.685Z", "fulltext": [], "dateoftransformation": "2020-03-11T20:11:13.15Z", "description": [], "format": [], "journal": {"issnPrinted": "", "conferencedate": "", "conferenceplace": "", "name": "", "edition": "", "iss": "", "sp": "", "vol": "", "dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "issnOnline": "", "ep": "", "issnLinking": ""}, "coverage": [], "publisher": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "language": {"classid": "en", "classname": "en", "schemename": "dnet:languages", "schemeid": "dnet:languages"}, "bestaccessright": {"classid": "UNKNOWN", "classname": "not available", "schemename": "dnet:access_modes", "schemeid": "dnet:access_modes"}, "country": [{"classid": "FI", "classname": "Finland", "schemeid": "dnet:countries", "schemename": "dnet:countries"}], "extraInfo": [], "originalId": ["(BISIS)113444", "https://www.cris.uns.ac.rs/record.jsf?recordId=113444&source=OpenAIRE&language=en"], "dateofacceptance": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "2016-01-01"}, "title": [{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "test title", "classname": "test title", "schemename": "dnet:dataCite_title", "schemeid": "dnet:dataCite_title"}, "value": "Antichains of copies of ultrahomogeneous structures"}]} \ No newline at end of file From ae04234472661b4c0b2e99a710b015ba6295023f Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Mon, 25 May 2020 19:32:48 +0200 Subject: [PATCH 08/10] DataInfo.deletedbyinference is false by default --- .../src/main/java/eu/dnetlib/dhp/schema/oaf/DataInfo.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/DataInfo.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/DataInfo.java index cc77e1ea0c..9d572ee30a 100644 --- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/DataInfo.java +++ b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/DataInfo.java @@ -8,7 +8,7 @@ public class DataInfo implements Serializable { private Boolean invisible = false; private Boolean inferred; - private Boolean deletedbyinference; + private Boolean deletedbyinference = false; private String trust; private String inferenceprovenance; private Qualifier provenanceaction; From 01c2e933958a17d6a23b150d5d8fdccf371baf09 Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Mon, 25 May 2020 19:48:14 +0200 Subject: [PATCH 09/10] [maven-release-plugin] prepare release dhp-1.2.1 --- dhp-build/dhp-build-assembly-resources/pom.xml | 2 +- dhp-build/dhp-build-properties-maven-plugin/pom.xml | 2 +- dhp-build/dhp-code-style/pom.xml | 2 +- dhp-build/pom.xml | 2 +- dhp-common/pom.xml | 2 +- dhp-schemas/pom.xml | 2 +- dhp-workflows/dhp-actionmanager/pom.xml | 2 +- dhp-workflows/dhp-aggregation/pom.xml | 2 +- dhp-workflows/dhp-blacklist/pom.xml | 6 ++---- dhp-workflows/dhp-broker-events/pom.xml | 2 +- dhp-workflows/dhp-dedup-openaire/pom.xml | 2 +- dhp-workflows/dhp-dedup-scholexplorer/pom.xml | 2 +- dhp-workflows/dhp-distcp/pom.xml | 2 +- dhp-workflows/dhp-enrichment/pom.xml | 6 ++---- dhp-workflows/dhp-graph-mapper/pom.xml | 2 +- dhp-workflows/dhp-graph-provision-scholexplorer/pom.xml | 2 +- dhp-workflows/dhp-graph-provision/pom.xml | 2 +- dhp-workflows/dhp-stats-update/pom.xml | 2 +- dhp-workflows/dhp-worfklow-profiles/pom.xml | 2 +- dhp-workflows/pom.xml | 2 +- pom.xml | 4 ++-- 21 files changed, 24 insertions(+), 28 deletions(-) diff --git a/dhp-build/dhp-build-assembly-resources/pom.xml b/dhp-build/dhp-build-assembly-resources/pom.xml index 327c33d6f2..0b05a71de4 100644 --- a/dhp-build/dhp-build-assembly-resources/pom.xml +++ b/dhp-build/dhp-build-assembly-resources/pom.xml @@ -6,7 +6,7 @@ eu.dnetlib.dhp dhp-build - 1.2.1-SNAPSHOT + 1.2.1 dhp-build-assembly-resources diff --git a/dhp-build/dhp-build-properties-maven-plugin/pom.xml b/dhp-build/dhp-build-properties-maven-plugin/pom.xml index 873046e080..0dab4bf361 100644 --- a/dhp-build/dhp-build-properties-maven-plugin/pom.xml +++ b/dhp-build/dhp-build-properties-maven-plugin/pom.xml @@ -6,7 +6,7 @@ eu.dnetlib.dhp dhp-build - 1.2.1-SNAPSHOT + 1.2.1 dhp-build-properties-maven-plugin diff --git a/dhp-build/dhp-code-style/pom.xml b/dhp-build/dhp-code-style/pom.xml index 8099a72e4e..3e94ba7975 100644 --- a/dhp-build/dhp-code-style/pom.xml +++ b/dhp-build/dhp-code-style/pom.xml @@ -5,7 +5,7 @@ eu.dnetlib.dhp dhp-code-style - 1.2.1-SNAPSHOT + 1.2.1 jar diff --git a/dhp-build/pom.xml b/dhp-build/pom.xml index a700a29187..6e1751ec5d 100644 --- a/dhp-build/pom.xml +++ b/dhp-build/pom.xml @@ -4,7 +4,7 @@ eu.dnetlib.dhp dhp - 1.2.1-SNAPSHOT + 1.2.1 dhp-build pom diff --git a/dhp-common/pom.xml b/dhp-common/pom.xml index c7cb11b085..0fc78c9116 100644 --- a/dhp-common/pom.xml +++ b/dhp-common/pom.xml @@ -5,7 +5,7 @@ eu.dnetlib.dhp dhp - 1.2.1-SNAPSHOT + 1.2.1 ../ diff --git a/dhp-schemas/pom.xml b/dhp-schemas/pom.xml index fe5d0c431a..1f72251fa3 100644 --- a/dhp-schemas/pom.xml +++ b/dhp-schemas/pom.xml @@ -5,7 +5,7 @@ eu.dnetlib.dhp dhp - 1.2.1-SNAPSHOT + 1.2.1 ../ diff --git a/dhp-workflows/dhp-actionmanager/pom.xml b/dhp-workflows/dhp-actionmanager/pom.xml index 22a81f7da8..0c0bbb1342 100644 --- a/dhp-workflows/dhp-actionmanager/pom.xml +++ b/dhp-workflows/dhp-actionmanager/pom.xml @@ -4,7 +4,7 @@ eu.dnetlib.dhp dhp-workflows - 1.2.1-SNAPSHOT + 1.2.1 dhp-actionmanager diff --git a/dhp-workflows/dhp-aggregation/pom.xml b/dhp-workflows/dhp-aggregation/pom.xml index 1c5465c14a..ae64a1cb85 100644 --- a/dhp-workflows/dhp-aggregation/pom.xml +++ b/dhp-workflows/dhp-aggregation/pom.xml @@ -4,7 +4,7 @@ eu.dnetlib.dhp dhp-workflows - 1.2.1-SNAPSHOT + 1.2.1 dhp-aggregation diff --git a/dhp-workflows/dhp-blacklist/pom.xml b/dhp-workflows/dhp-blacklist/pom.xml index 37abc22f61..89d7ec6a75 100644 --- a/dhp-workflows/dhp-blacklist/pom.xml +++ b/dhp-workflows/dhp-blacklist/pom.xml @@ -1,11 +1,9 @@ - + dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 diff --git a/dhp-workflows/dhp-broker-events/pom.xml b/dhp-workflows/dhp-broker-events/pom.xml index 8b7ec38511..c851fbd2a7 100644 --- a/dhp-workflows/dhp-broker-events/pom.xml +++ b/dhp-workflows/dhp-broker-events/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 diff --git a/dhp-workflows/dhp-dedup-openaire/pom.xml b/dhp-workflows/dhp-dedup-openaire/pom.xml index fcc356ac08..05a373507b 100644 --- a/dhp-workflows/dhp-dedup-openaire/pom.xml +++ b/dhp-workflows/dhp-dedup-openaire/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 dhp-dedup-openaire diff --git a/dhp-workflows/dhp-dedup-scholexplorer/pom.xml b/dhp-workflows/dhp-dedup-scholexplorer/pom.xml index dff376c2d2..21069f42d2 100644 --- a/dhp-workflows/dhp-dedup-scholexplorer/pom.xml +++ b/dhp-workflows/dhp-dedup-scholexplorer/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 diff --git a/dhp-workflows/dhp-distcp/pom.xml b/dhp-workflows/dhp-distcp/pom.xml index c13bec8e6d..7f15601aec 100644 --- a/dhp-workflows/dhp-distcp/pom.xml +++ b/dhp-workflows/dhp-distcp/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 diff --git a/dhp-workflows/dhp-enrichment/pom.xml b/dhp-workflows/dhp-enrichment/pom.xml index fe9833e3ea..ecf00a7bc4 100644 --- a/dhp-workflows/dhp-enrichment/pom.xml +++ b/dhp-workflows/dhp-enrichment/pom.xml @@ -1,11 +1,9 @@ - + dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 diff --git a/dhp-workflows/dhp-graph-mapper/pom.xml b/dhp-workflows/dhp-graph-mapper/pom.xml index 62968c4107..066aea97ac 100644 --- a/dhp-workflows/dhp-graph-mapper/pom.xml +++ b/dhp-workflows/dhp-graph-mapper/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 diff --git a/dhp-workflows/dhp-graph-provision-scholexplorer/pom.xml b/dhp-workflows/dhp-graph-provision-scholexplorer/pom.xml index e0ee03660b..533093598d 100644 --- a/dhp-workflows/dhp-graph-provision-scholexplorer/pom.xml +++ b/dhp-workflows/dhp-graph-provision-scholexplorer/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 diff --git a/dhp-workflows/dhp-graph-provision/pom.xml b/dhp-workflows/dhp-graph-provision/pom.xml index 39699b3b67..a78eab8ec9 100644 --- a/dhp-workflows/dhp-graph-provision/pom.xml +++ b/dhp-workflows/dhp-graph-provision/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 diff --git a/dhp-workflows/dhp-stats-update/pom.xml b/dhp-workflows/dhp-stats-update/pom.xml index 06408937bc..a15f3efe15 100644 --- a/dhp-workflows/dhp-stats-update/pom.xml +++ b/dhp-workflows/dhp-stats-update/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 dhp-stats-update diff --git a/dhp-workflows/dhp-worfklow-profiles/pom.xml b/dhp-workflows/dhp-worfklow-profiles/pom.xml index 5f99cdc8d3..b1c5da730d 100644 --- a/dhp-workflows/dhp-worfklow-profiles/pom.xml +++ b/dhp-workflows/dhp-worfklow-profiles/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1-SNAPSHOT + 1.2.1 4.0.0 diff --git a/dhp-workflows/pom.xml b/dhp-workflows/pom.xml index 271c669397..fe7adf79b8 100644 --- a/dhp-workflows/pom.xml +++ b/dhp-workflows/pom.xml @@ -6,7 +6,7 @@ eu.dnetlib.dhp dhp - 1.2.1-SNAPSHOT + 1.2.1 ../ diff --git a/pom.xml b/pom.xml index 419de3540d..77675b576d 100644 --- a/pom.xml +++ b/pom.xml @@ -3,7 +3,7 @@ 4.0.0 eu.dnetlib.dhp dhp - 1.2.1-SNAPSHOT + 1.2.1 pom @@ -38,7 +38,7 @@ scm:git:gitea@code-repo.d4science.org:D-Net/dnet-hadoop.git scm:git:gitea@code-repo.d4science.org:D-Net/dnet-hadoop.git https://code-repo.d4science.org/D-Net/dnet-hadoop/ - HEAD + dhp-1.2.1 This module is the root descriptor for the dnet-hadoop project From 7582532e737d3d6e29febe3374607ce42ff13c8d Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Mon, 25 May 2020 19:48:18 +0200 Subject: [PATCH 10/10] [maven-release-plugin] prepare for next development iteration --- dhp-build/dhp-build-assembly-resources/pom.xml | 2 +- dhp-build/dhp-build-properties-maven-plugin/pom.xml | 2 +- dhp-build/dhp-code-style/pom.xml | 2 +- dhp-build/pom.xml | 2 +- dhp-common/pom.xml | 2 +- dhp-schemas/pom.xml | 2 +- dhp-workflows/dhp-actionmanager/pom.xml | 2 +- dhp-workflows/dhp-aggregation/pom.xml | 2 +- dhp-workflows/dhp-blacklist/pom.xml | 2 +- dhp-workflows/dhp-broker-events/pom.xml | 2 +- dhp-workflows/dhp-dedup-openaire/pom.xml | 2 +- dhp-workflows/dhp-dedup-scholexplorer/pom.xml | 2 +- dhp-workflows/dhp-distcp/pom.xml | 2 +- dhp-workflows/dhp-enrichment/pom.xml | 2 +- dhp-workflows/dhp-graph-mapper/pom.xml | 2 +- dhp-workflows/dhp-graph-provision-scholexplorer/pom.xml | 2 +- dhp-workflows/dhp-graph-provision/pom.xml | 2 +- dhp-workflows/dhp-stats-update/pom.xml | 2 +- dhp-workflows/dhp-worfklow-profiles/pom.xml | 2 +- dhp-workflows/pom.xml | 2 +- pom.xml | 4 ++-- 21 files changed, 22 insertions(+), 22 deletions(-) diff --git a/dhp-build/dhp-build-assembly-resources/pom.xml b/dhp-build/dhp-build-assembly-resources/pom.xml index 0b05a71de4..8bae191d38 100644 --- a/dhp-build/dhp-build-assembly-resources/pom.xml +++ b/dhp-build/dhp-build-assembly-resources/pom.xml @@ -6,7 +6,7 @@ eu.dnetlib.dhp dhp-build - 1.2.1 + 1.2.2-SNAPSHOT dhp-build-assembly-resources diff --git a/dhp-build/dhp-build-properties-maven-plugin/pom.xml b/dhp-build/dhp-build-properties-maven-plugin/pom.xml index 0dab4bf361..ad8cd57b4a 100644 --- a/dhp-build/dhp-build-properties-maven-plugin/pom.xml +++ b/dhp-build/dhp-build-properties-maven-plugin/pom.xml @@ -6,7 +6,7 @@ eu.dnetlib.dhp dhp-build - 1.2.1 + 1.2.2-SNAPSHOT dhp-build-properties-maven-plugin diff --git a/dhp-build/dhp-code-style/pom.xml b/dhp-build/dhp-code-style/pom.xml index 3e94ba7975..08f5de9ee8 100644 --- a/dhp-build/dhp-code-style/pom.xml +++ b/dhp-build/dhp-code-style/pom.xml @@ -5,7 +5,7 @@ eu.dnetlib.dhp dhp-code-style - 1.2.1 + 1.2.2-SNAPSHOT jar diff --git a/dhp-build/pom.xml b/dhp-build/pom.xml index 6e1751ec5d..369e25b24b 100644 --- a/dhp-build/pom.xml +++ b/dhp-build/pom.xml @@ -4,7 +4,7 @@ eu.dnetlib.dhp dhp - 1.2.1 + 1.2.2-SNAPSHOT dhp-build pom diff --git a/dhp-common/pom.xml b/dhp-common/pom.xml index 0fc78c9116..60e66f45a2 100644 --- a/dhp-common/pom.xml +++ b/dhp-common/pom.xml @@ -5,7 +5,7 @@ eu.dnetlib.dhp dhp - 1.2.1 + 1.2.2-SNAPSHOT ../ diff --git a/dhp-schemas/pom.xml b/dhp-schemas/pom.xml index 1f72251fa3..5e864cf940 100644 --- a/dhp-schemas/pom.xml +++ b/dhp-schemas/pom.xml @@ -5,7 +5,7 @@ eu.dnetlib.dhp dhp - 1.2.1 + 1.2.2-SNAPSHOT ../ diff --git a/dhp-workflows/dhp-actionmanager/pom.xml b/dhp-workflows/dhp-actionmanager/pom.xml index 0c0bbb1342..ec6247102e 100644 --- a/dhp-workflows/dhp-actionmanager/pom.xml +++ b/dhp-workflows/dhp-actionmanager/pom.xml @@ -4,7 +4,7 @@ eu.dnetlib.dhp dhp-workflows - 1.2.1 + 1.2.2-SNAPSHOT dhp-actionmanager diff --git a/dhp-workflows/dhp-aggregation/pom.xml b/dhp-workflows/dhp-aggregation/pom.xml index ae64a1cb85..9f082df70a 100644 --- a/dhp-workflows/dhp-aggregation/pom.xml +++ b/dhp-workflows/dhp-aggregation/pom.xml @@ -4,7 +4,7 @@ eu.dnetlib.dhp dhp-workflows - 1.2.1 + 1.2.2-SNAPSHOT dhp-aggregation diff --git a/dhp-workflows/dhp-blacklist/pom.xml b/dhp-workflows/dhp-blacklist/pom.xml index 89d7ec6a75..a3cc15b744 100644 --- a/dhp-workflows/dhp-blacklist/pom.xml +++ b/dhp-workflows/dhp-blacklist/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 diff --git a/dhp-workflows/dhp-broker-events/pom.xml b/dhp-workflows/dhp-broker-events/pom.xml index c851fbd2a7..fa1a14b4a0 100644 --- a/dhp-workflows/dhp-broker-events/pom.xml +++ b/dhp-workflows/dhp-broker-events/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 diff --git a/dhp-workflows/dhp-dedup-openaire/pom.xml b/dhp-workflows/dhp-dedup-openaire/pom.xml index 05a373507b..44cf9e67cc 100644 --- a/dhp-workflows/dhp-dedup-openaire/pom.xml +++ b/dhp-workflows/dhp-dedup-openaire/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 dhp-dedup-openaire diff --git a/dhp-workflows/dhp-dedup-scholexplorer/pom.xml b/dhp-workflows/dhp-dedup-scholexplorer/pom.xml index 21069f42d2..429c8a6486 100644 --- a/dhp-workflows/dhp-dedup-scholexplorer/pom.xml +++ b/dhp-workflows/dhp-dedup-scholexplorer/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 diff --git a/dhp-workflows/dhp-distcp/pom.xml b/dhp-workflows/dhp-distcp/pom.xml index 7f15601aec..8454c29a4d 100644 --- a/dhp-workflows/dhp-distcp/pom.xml +++ b/dhp-workflows/dhp-distcp/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 diff --git a/dhp-workflows/dhp-enrichment/pom.xml b/dhp-workflows/dhp-enrichment/pom.xml index ecf00a7bc4..2dc0f24366 100644 --- a/dhp-workflows/dhp-enrichment/pom.xml +++ b/dhp-workflows/dhp-enrichment/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 diff --git a/dhp-workflows/dhp-graph-mapper/pom.xml b/dhp-workflows/dhp-graph-mapper/pom.xml index 066aea97ac..aee3d27c1d 100644 --- a/dhp-workflows/dhp-graph-mapper/pom.xml +++ b/dhp-workflows/dhp-graph-mapper/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 diff --git a/dhp-workflows/dhp-graph-provision-scholexplorer/pom.xml b/dhp-workflows/dhp-graph-provision-scholexplorer/pom.xml index 533093598d..e0ce739cfb 100644 --- a/dhp-workflows/dhp-graph-provision-scholexplorer/pom.xml +++ b/dhp-workflows/dhp-graph-provision-scholexplorer/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 diff --git a/dhp-workflows/dhp-graph-provision/pom.xml b/dhp-workflows/dhp-graph-provision/pom.xml index a78eab8ec9..62bf7186ce 100644 --- a/dhp-workflows/dhp-graph-provision/pom.xml +++ b/dhp-workflows/dhp-graph-provision/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 diff --git a/dhp-workflows/dhp-stats-update/pom.xml b/dhp-workflows/dhp-stats-update/pom.xml index a15f3efe15..d6ec4e6ab2 100644 --- a/dhp-workflows/dhp-stats-update/pom.xml +++ b/dhp-workflows/dhp-stats-update/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 dhp-stats-update diff --git a/dhp-workflows/dhp-worfklow-profiles/pom.xml b/dhp-workflows/dhp-worfklow-profiles/pom.xml index b1c5da730d..cb20db57eb 100644 --- a/dhp-workflows/dhp-worfklow-profiles/pom.xml +++ b/dhp-workflows/dhp-worfklow-profiles/pom.xml @@ -3,7 +3,7 @@ dhp-workflows eu.dnetlib.dhp - 1.2.1 + 1.2.2-SNAPSHOT 4.0.0 diff --git a/dhp-workflows/pom.xml b/dhp-workflows/pom.xml index fe7adf79b8..cf9753da40 100644 --- a/dhp-workflows/pom.xml +++ b/dhp-workflows/pom.xml @@ -6,7 +6,7 @@ eu.dnetlib.dhp dhp - 1.2.1 + 1.2.2-SNAPSHOT ../ diff --git a/pom.xml b/pom.xml index 77675b576d..e0ee189001 100644 --- a/pom.xml +++ b/pom.xml @@ -3,7 +3,7 @@ 4.0.0 eu.dnetlib.dhp dhp - 1.2.1 + 1.2.2-SNAPSHOT pom @@ -38,7 +38,7 @@ scm:git:gitea@code-repo.d4science.org:D-Net/dnet-hadoop.git scm:git:gitea@code-repo.d4science.org:D-Net/dnet-hadoop.git https://code-repo.d4science.org/D-Net/dnet-hadoop/ - dhp-1.2.1 + HEAD This module is the root descriptor for the dnet-hadoop project