forked from D-Net/dnet-hadoop
added the monitor db wf
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parent
1c029b9fc0
commit
cd1b794409
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@ -0,0 +1,24 @@
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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if ! [ -L $link_folder ]
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then
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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export SOURCE=$1
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export TARGET=$2
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export SHADOW=$3
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export SCRIPT_PATH=$4
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echo "Getting file from " $4
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hdfs dfs -copyToLocal $4
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echo "Creating monitor database"
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cat step21-createMonitorDB.sql | sed s/SOURCE/$1/g | sed s/TARGET/$2/g1 | impala-shell -f -
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echo "Impala shell finished"
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echo "Updating shadow monitor database"
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impala-shell -d $3 -q "show tables" --delimited | sed 's/^/drop view if exists $3./' | sed 's/$/;/' | impala-shell -f -
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impala-shell -d $2 -q "show tables" --delimited | sed 's/\(.*\)/create view $3.\1 as select * from $2.\1;/' | impala-shell -f -
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echo "Shadow db ready!"
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@ -0,0 +1,121 @@
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drop database if exists TARGET cascade;
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create database if not exists TARGET;
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create view if not exists TARGET.category as select * from SOURCE.category;
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create view if not exists TARGET.concept as select * from SOURCE.concept;
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create view if not exists TARGET.context as select * from SOURCE.context;
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create view if not exists TARGET.country as select * from SOURCE.country;
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create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
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create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
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create view if not exists TARGET.funder as select * from SOURCE.funder;
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create view if not exists TARGET.fundref as select * from SOURCE.fundref;
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create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
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--create view if not exists TARGET.roarmap as select * from SOURCE.roarmap;
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create table TARGET.result as
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select distinct * from (
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select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on rp.project=p.id where rp.id=r.id)
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union all
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select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id) ) foo;
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compute stats TARGET.result;
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create table TARGET.result_affiliated_country as select * from SOURCE.result_affiliated_country rac where exists (select 1 from TARGET.result r where r.id=rac.id);
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compute stats TARGET.result_affiliated_country;
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create table TARGET.result_citations as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_citations;
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create table TARGET.result_classifications as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_classifications;
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create table TARGET.result_concepts as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_concepts;
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create table TARGET.result_datasources as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_datasources;
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create table TARGET.result_deposited_country as select * from SOURCE.result_deposited_country orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_deposited_country;
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create table TARGET.result_fundercount as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_fundercount;
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create table TARGET.result_gold as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_gold;
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create table TARGET.result_greenoa as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_greenoa;
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create table TARGET.result_languages as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_languages;
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create table TARGET.result_licences as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_licences;
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create table TARGET.result_oids as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_oids;
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create table TARGET.result_organization as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_organization;
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create table TARGET.result_peerreviewed as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_peerreviewed;
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create table TARGET.result_pids as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_pids;
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create table TARGET.result_projectcount as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_projectcount;
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create table TARGET.result_projects as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_projects;
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create table TARGET.result_refereed as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_refereed;
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create table TARGET.result_sources as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_sources;
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create table TARGET.result_topics as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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compute stats TARGET.result_topics;
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-- datasources
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create view if not exists TARGET.datasource as select * from SOURCE.datasource;
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create view if not exists TARGET.datasource_oids as select * from SOURCE.datasource_oids;
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create view if not exists TARGET.datasource_organizations as select * from SOURCE.datasource_organizations;
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create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources;
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create table TARGET.datasource_results as select id as result, datasource as id from TARGET.result_datasources;
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compute stats TARGET.datasource_results;
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-- organizations
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create view if not exists TARGET.organization as select * from SOURCE.organization;
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create view if not exists TARGET.organization_datasources as select * from SOURCE.organization_datasources;
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create view if not exists TARGET.organization_pids as select * from SOURCE.organization_pids;
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create view if not exists TARGET.organization_projects as select * from SOURCE.organization_projects;
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create view if not exists TARGET.organization_sources as select * from SOURCE.organization_sources;
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-- projects
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create view if not exists TARGET.project as select * from SOURCE.project;
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create view if not exists TARGET.project_oids as select * from SOURCE.project_oids;
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create view if not exists TARGET.project_organizations as select * from SOURCE.project_organizations;
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create view if not exists TARGET.project_resultcount as select * from SOURCE.project_resultcount;
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create table TARGET.project_results as select id as result, project as id from TARGET.result_projects;
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compute stats TARGET.project_results;
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--denorm
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alter table TARGET.result rename to TARGET.res_tmp;
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create table TARGET.result_denorm as
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select distinct r.*, rp.project, p.acronym as pacronym, p.title as ptitle, p.funder as pfunder, p.funding_lvl0 as pfunding_lvl0, rd.datasource, d.name as dname, d.type as dtype
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from TARGET.res_tmp r
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join TARGET.result_projects rp on rp.id=r.id
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join TARGET.result_datasources rd on rd.id=r.id
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join TARGET.project p on p.id=rp.project
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join TARGET.datasource d on d.id=rd.datasource;
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compute stats TARGET.result_denorm;
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alter table TARGET.result_denorm rename to TARGET.result;
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drop table TARGET.res_tmp;
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--- done!
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@ -17,6 +17,14 @@
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<name>stats_db_shadow_name</name>
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<description>the name of the shadow schema</description>
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</property>
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<property>
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<name>monitor_db_name</name>
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<description>the target monitor db name</description>
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</property>
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<property>
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<name>monitor_db_shadow_name</name>
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<description>the name of the shadow monitor db</description>
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</property>
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<property>
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<name>stats_tool_api_url</name>
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<description>The url of the API of the stats tool. Is used to trigger the cache update.</description>
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@ -303,6 +311,20 @@
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<argument>${stats_tool_api_url}</argument>
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<file>updateCache.sh</file>
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</shell>
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<ok to="step21-createMonitorDB"/>
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<error to="Kill"/>
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</action>
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<action name="step21-createMonitorDB">
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<shell xmlns="uri:oozie:shell-action:0.1">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<exec>monitor.sh</exec>
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<argument>${stats-db-name}</argument>
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<argument>${monitor-db-name}</argument>
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<argument>${wf:appPath()}/scripts/step21-createMonitorDB.sql</argument>
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<file>monitor.sh</file>
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</shell>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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