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Merge branch 'doiboost' of https://code-repo.d4science.org/D-Net/dnet-hadoop into doiboost

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GNU AFFERO GENERAL PUBLIC LICENSE
Version 3, 19 November 2007
Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
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Preamble
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<artifactId>dhp-build-assembly-resources</artifactId>
<packaging>jar</packaging>
<description>This module contains a set of scripts supporting the build lifecycle for the dnet-hadoop project</description>
<build>
<plugins>
<plugin>

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@ -12,22 +12,29 @@
<artifactId>dhp-build-properties-maven-plugin</artifactId>
<packaging>maven-plugin</packaging>
<description>This module is a maven plugin implementing custom properties substitutions in the build lifecycle</description>
<dependencies>
<dependency>
<groupId>org.apache.maven</groupId>
<artifactId>maven-plugin-api</artifactId>
<version>2.0</version>
<version>3.6.3</version>
</dependency>
<dependency>
<groupId>org.apache.maven</groupId>
<artifactId>maven-project</artifactId>
<version>2.0</version>
<version>2.2.1</version>
</dependency>
<dependency>
<groupId>org.apache.maven</groupId>
<artifactId>maven-artifact</artifactId>
<version>2.2.1</version>
</dependency>
<dependency>
<groupId>org.kuali.maven.plugins</groupId>
<artifactId>properties-maven-plugin</artifactId>
<version>1.3.2</version>
<version>${properties.maven.plugin.version}</version>
</dependency>
<dependency>
<groupId>com.google.code.findbugs</groupId>
@ -73,44 +80,10 @@
<artifactId>maven-javadoc-plugin</artifactId>
<configuration>
<detectLinks>true</detectLinks>
<doclint>none</doclint>
</configuration>
</plugin>
</plugins>
<pluginManagement>
<plugins>
<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself.-->
<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
<version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
<pluginExecution>
<pluginExecutionFilter>
<groupId>
org.apache.maven.plugins
</groupId>
<artifactId>
maven-plugin-plugin
</artifactId>
<versionRange>
[3.2,)
</versionRange>
<goals>
<goal>descriptor</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore />
</action>
</pluginExecution>
</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
</plugins>
</pluginManagement>
</build>
</project>

103
dhp-build/dhp-build-properties-maven-plugin/src/main/java/eu/dnetlib/maven/plugin/properties/GenerateOoziePropertiesMojo.java
View File

@ -1,8 +1,10 @@
package eu.dnetlib.maven.plugin.properties;
import java.io.File;
import java.util.ArrayList;
import java.util.List;
import org.apache.commons.lang.ArrayUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.maven.plugin.AbstractMojo;
@ -17,57 +19,58 @@ import org.apache.maven.plugin.MojoFailureException;
*/
public class GenerateOoziePropertiesMojo extends AbstractMojo {
public static final String PROPERTY_NAME_WF_SOURCE_DIR = "workflow.source.dir";
public static final String PROPERTY_NAME_SANDBOX_NAME = "sandboxName";
public static final String PROPERTY_NAME_WF_SOURCE_DIR = "workflow.source.dir";
public static final String PROPERTY_NAME_SANDBOX_NAME = "sandboxName";
private final String[] limiters = {"dhp", "dnetlib", "eu"};
private final String[] limiters = {
"dhp", "dnetlib", "eu"
};
@Override
public void execute() throws MojoExecutionException, MojoFailureException {
if (System.getProperties().containsKey(PROPERTY_NAME_WF_SOURCE_DIR)
&& !System.getProperties().containsKey(PROPERTY_NAME_SANDBOX_NAME)) {
String generatedSandboxName =
generateSandboxName(
System.getProperties().getProperty(PROPERTY_NAME_WF_SOURCE_DIR));
if (generatedSandboxName != null) {
System.getProperties()
.setProperty(PROPERTY_NAME_SANDBOX_NAME, generatedSandboxName);
} else {
System.out.println(
"unable to generate sandbox name from path: "
+ System.getProperties().getProperty(PROPERTY_NAME_WF_SOURCE_DIR));
}
}
}
@Override
public void execute() throws MojoExecutionException, MojoFailureException {
if (System.getProperties().containsKey(PROPERTY_NAME_WF_SOURCE_DIR)
&& !System.getProperties().containsKey(PROPERTY_NAME_SANDBOX_NAME)) {
String generatedSandboxName = generateSandboxName(
System.getProperties().getProperty(PROPERTY_NAME_WF_SOURCE_DIR));
if (generatedSandboxName != null) {
System.getProperties().setProperty(PROPERTY_NAME_SANDBOX_NAME, generatedSandboxName);
} else {
System.out
.println(
"unable to generate sandbox name from path: "
+ System.getProperties().getProperty(PROPERTY_NAME_WF_SOURCE_DIR));
}
}
}
/**
* Generates sandbox name from workflow source directory.
*
* @param wfSourceDir
* @return generated sandbox name
*/
private String generateSandboxName(String wfSourceDir) {
// utilize all dir names until finding one of the limiters
List<String> sandboxNameParts = new ArrayList<String>();
String[] tokens = StringUtils.split(wfSourceDir, File.separatorChar);
ArrayUtils.reverse(tokens);
if (tokens.length > 0) {
for (String token : tokens) {
for (String limiter : limiters) {
if (limiter.equals(token)) {
return sandboxNameParts.size() > 0
? StringUtils.join(sandboxNameParts.toArray())
: null;
}
}
if (sandboxNameParts.size() > 0) {
sandboxNameParts.add(0, File.separator);
}
sandboxNameParts.add(0, token);
}
return StringUtils.join(sandboxNameParts.toArray());
} else {
return null;
}
}
/**
* Generates sandbox name from workflow source directory.
*
* @param wfSourceDir
* @return generated sandbox name
*/
private String generateSandboxName(String wfSourceDir) {
// utilize all dir names until finding one of the limiters
List<String> sandboxNameParts = new ArrayList<String>();
String[] tokens = StringUtils.split(wfSourceDir, File.separatorChar);
ArrayUtils.reverse(tokens);
if (tokens.length > 0) {
for (String token : tokens) {
for (String limiter : limiters) {
if (limiter.equals(token)) {
return sandboxNameParts.size() > 0
? StringUtils.join(sandboxNameParts.toArray())
: null;
}
}
if (sandboxNameParts.size() > 0) {
sandboxNameParts.add(0, File.separator);
}
sandboxNameParts.add(0, token);
}
return StringUtils.join(sandboxNameParts.toArray());
} else {
return null;
}
}
}

733
dhp-build/dhp-build-properties-maven-plugin/src/main/java/eu/dnetlib/maven/plugin/properties/WritePredefinedProjectProperties.java
View File

@ -9,9 +9,9 @@
* express or implied. See the License for the specific language governing permissions and
* limitations under the License.
*/
package eu.dnetlib.maven.plugin.properties;
import edu.umd.cs.findbugs.annotations.SuppressFBWarnings;
import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
@ -24,6 +24,7 @@ import java.util.List;
import java.util.Map.Entry;
import java.util.Properties;
import java.util.Set;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang.StringUtils;
@ -35,410 +36,412 @@ import org.springframework.core.io.DefaultResourceLoader;
import org.springframework.core.io.Resource;
import org.springframework.core.io.ResourceLoader;
import edu.umd.cs.findbugs.annotations.SuppressFBWarnings;
/**
* Writes project properties for the keys listed in specified properties files. Based on:
* http://site.kuali.org/maven/plugins/properties-maven-plugin/1.3.2/write-project-properties-mojo.html
* http://site.kuali.org/maven/plugins/properties-maven-plugin/2.0.1/write-project-properties-mojo.html
*
* @author mhorst
* @goal write-project-properties
*/
public class WritePredefinedProjectProperties extends AbstractMojo {
private static final String CR = "\r";
private static final String LF = "\n";
private static final String TAB = "\t";
protected static final String PROPERTY_PREFIX_ENV = "env.";
private static final String ENCODING_UTF8 = "utf8";
private static final String CR = "\r";
private static final String LF = "\n";
private static final String TAB = "\t";
protected static final String PROPERTY_PREFIX_ENV = "env.";
private static final String ENCODING_UTF8 = "utf8";
/** @parameter property="properties.includePropertyKeysFromFiles" */
private String[] includePropertyKeysFromFiles;
/** @parameter property="properties.includePropertyKeysFromFiles" */
private String[] includePropertyKeysFromFiles;
/**
* @parameter default-value="${project}"
* @required
* @readonly
*/
protected MavenProject project;
/**
* @parameter default-value="${project}"
* @required
* @readonly
*/
protected MavenProject project;
/**
* The file that properties will be written to
*
* @parameter property="properties.outputFile"
* default-value="${project.build.directory}/properties/project.properties";
* @required
*/
protected File outputFile;
/**
* The file that properties will be written to
*
* @parameter property="properties.outputFile"
* default-value="${project.build.directory}/properties/project.properties";
* @required
*/
protected File outputFile;
/**
* If true, the plugin will silently ignore any non-existent properties files, and the build
* will continue
*
* @parameter property="properties.quiet" default-value="true"
*/
private boolean quiet;
/**
* If true, the plugin will silently ignore any non-existent properties files, and the build will continue
*
* @parameter property="properties.quiet" default-value="true"
*/
private boolean quiet;
/**
* Comma separated list of characters to escape when writing property values. cr=carriage
* return, lf=linefeed, tab=tab. Any other values are taken literally.
*
* @parameter default-value="cr,lf,tab" property="properties.escapeChars"
*/
private String escapeChars;
/**
* Comma separated list of characters to escape when writing property values. cr=carriage return, lf=linefeed,
* tab=tab. Any other values are taken literally.
*
* @parameter default-value="cr,lf,tab" property="properties.escapeChars"
*/
private String escapeChars;
/**
* If true, the plugin will include system properties when writing the properties file. System
* properties override both environment variables and project properties.
*
* @parameter default-value="false" property="properties.includeSystemProperties"
*/
private boolean includeSystemProperties;
/**
* If true, the plugin will include system properties when writing the properties file. System properties override
* both environment variables and project properties.
*
* @parameter default-value="false" property="properties.includeSystemProperties"
*/
private boolean includeSystemProperties;
/**
* If true, the plugin will include environment variables when writing the properties file.
* Environment variables are prefixed with "env". Environment variables override project
* properties.
*
* @parameter default-value="false" property="properties.includeEnvironmentVariables"
*/
private boolean includeEnvironmentVariables;
/**
* If true, the plugin will include environment variables when writing the properties file. Environment variables
* are prefixed with "env". Environment variables override project properties.
*
* @parameter default-value="false" property="properties.includeEnvironmentVariables"
*/
private boolean includeEnvironmentVariables;
/**
* Comma separated set of properties to exclude when writing the properties file
*
* @parameter property="properties.exclude"
*/
private String exclude;
/**
* Comma separated set of properties to exclude when writing the properties file
*
* @parameter property="properties.exclude"
*/
private String exclude;
/**
* Comma separated set of properties to write to the properties file. If provided, only the
* properties matching those supplied here will be written to the properties file.
*
* @parameter property="properties.include"
*/
private String include;
/**
* Comma separated set of properties to write to the properties file. If provided, only the properties matching
* those supplied here will be written to the properties file.
*
* @parameter property="properties.include"
*/
private String include;
/* (non-Javadoc)
* @see org.apache.maven.plugin.AbstractMojo#execute()
*/
@Override
@SuppressFBWarnings({"NP_UNWRITTEN_FIELD", "UWF_UNWRITTEN_FIELD"})
public void execute() throws MojoExecutionException, MojoFailureException {
Properties properties = new Properties();
// Add project properties
properties.putAll(project.getProperties());
if (includeEnvironmentVariables) {
// Add environment variables, overriding any existing properties with the same key
properties.putAll(getEnvironmentVariables());
}
if (includeSystemProperties) {
// Add system properties, overriding any existing properties with the same key
properties.putAll(System.getProperties());
}
/*
* (non-Javadoc)
* @see org.apache.maven.plugin.AbstractMojo#execute()
*/
@Override
@SuppressFBWarnings({
"NP_UNWRITTEN_FIELD", "UWF_UNWRITTEN_FIELD"
})
public void execute() throws MojoExecutionException, MojoFailureException {
Properties properties = new Properties();
// Add project properties
properties.putAll(project.getProperties());
if (includeEnvironmentVariables) {
// Add environment variables, overriding any existing properties with the same key
properties.putAll(getEnvironmentVariables());
}
if (includeSystemProperties) {
// Add system properties, overriding any existing properties with the same key
properties.putAll(System.getProperties());
}
// Remove properties as appropriate
trim(properties, exclude, include);
// Remove properties as appropriate
trim(properties, exclude, include);
String comment = "# " + new Date() + "\n";
List<String> escapeTokens = getEscapeChars(escapeChars);
String comment = "# " + new Date() + "\n";
List<String> escapeTokens = getEscapeChars(escapeChars);
getLog().info("Creating " + outputFile);
writeProperties(outputFile, comment, properties, escapeTokens);
}
getLog().info("Creating " + outputFile);
writeProperties(outputFile, comment, properties, escapeTokens);
}
/**
* Provides environment variables.
*
* @return environment variables
*/
protected static Properties getEnvironmentVariables() {
Properties props = new Properties();
for (Entry<String, String> entry : System.getenv().entrySet()) {
props.setProperty(PROPERTY_PREFIX_ENV + entry.getKey(), entry.getValue());
}
return props;
}
/**
* Provides environment variables.
*
* @return environment variables
*/
protected static Properties getEnvironmentVariables() {
Properties props = new Properties();
for (Entry<String, String> entry : System.getenv().entrySet()) {
props.setProperty(PROPERTY_PREFIX_ENV + entry.getKey(), entry.getValue());
}
return props;
}
/**
* Removes properties which should not be written.
*
* @param properties
* @param omitCSV
* @param includeCSV
* @throws MojoExecutionException
*/
protected void trim(Properties properties, String omitCSV, String includeCSV)
throws MojoExecutionException {
List<String> omitKeys = getListFromCSV(omitCSV);
for (String key : omitKeys) {
properties.remove(key);
}
/**
* Removes properties which should not be written.
*
* @param properties
* @param omitCSV
* @param includeCSV
* @throws MojoExecutionException
*/
protected void trim(Properties properties, String omitCSV, String includeCSV)
throws MojoExecutionException {
List<String> omitKeys = getListFromCSV(omitCSV);
for (String key : omitKeys) {
properties.remove(key);
}
List<String> includeKeys = getListFromCSV(includeCSV);
// mh: including keys from predefined properties
if (includePropertyKeysFromFiles != null && includePropertyKeysFromFiles.length > 0) {
for (String currentIncludeLoc : includePropertyKeysFromFiles) {
if (validate(currentIncludeLoc)) {
Properties p = getProperties(currentIncludeLoc);
for (String key : p.stringPropertyNames()) {
includeKeys.add(key);
}
}
}
}
if (includeKeys != null && !includeKeys.isEmpty()) {
// removing only when include keys provided
Set<String> keys = properties.stringPropertyNames();
for (String key : keys) {
if (!includeKeys.contains(key)) {
properties.remove(key);
}
}
}
}
List<String> includeKeys = getListFromCSV(includeCSV);
// mh: including keys from predefined properties
if (includePropertyKeysFromFiles != null && includePropertyKeysFromFiles.length > 0) {
for (String currentIncludeLoc : includePropertyKeysFromFiles) {
if (validate(currentIncludeLoc)) {
Properties p = getProperties(currentIncludeLoc);
for (String key : p.stringPropertyNames()) {
includeKeys.add(key);
}
}
}
}
if (includeKeys != null && !includeKeys.isEmpty()) {
// removing only when include keys provided
Set<String> keys = properties.stringPropertyNames();
for (String key : keys) {
if (!includeKeys.contains(key)) {
properties.remove(key);
}
}
}
}
/**
* Checks whether file exists.
*
* @param location
* @return true when exists, false otherwise.
*/
protected boolean exists(String location) {
if (StringUtils.isBlank(location)) {
return false;
}
File file = new File(location);
if (file.exists()) {
return true;
}
ResourceLoader loader = new DefaultResourceLoader();
Resource resource = loader.getResource(location);
return resource.exists();
}
/**
* Checks whether file exists.
*
* @param location
* @return true when exists, false otherwise.
*/
protected boolean exists(String location) {
if (StringUtils.isBlank(location)) {
return false;
}
File file = new File(location);
if (file.exists()) {
return true;
}
ResourceLoader loader = new DefaultResourceLoader();
Resource resource = loader.getResource(location);
return resource.exists();
}
/**
* Validates resource location.
*
* @param location
* @return true when valid, false otherwise
* @throws MojoExecutionException
*/
protected boolean validate(String location) throws MojoExecutionException {
boolean exists = exists(location);
if (exists) {
return true;
}
if (quiet) {
getLog().info("Ignoring non-existent properties file '" + location + "'");
return false;
} else {
throw new MojoExecutionException("Non-existent properties file '" + location + "'");
}
}
/**
* Validates resource location.
*
* @param location
* @return true when valid, false otherwise
* @throws MojoExecutionException
*/
protected boolean validate(String location) throws MojoExecutionException {
boolean exists = exists(location);
if (exists) {
return true;
}
if (quiet) {
getLog().info("Ignoring non-existent properties file '" + location + "'");
return false;
} else {
throw new MojoExecutionException("Non-existent properties file '" + location + "'");
}
}
/**
* Provides input stream.
*
* @param location
* @return input stream
* @throws IOException
*/
protected InputStream getInputStream(String location) throws IOException {
File file = new File(location);
if (file.exists()) {
return new FileInputStream(location);
}
ResourceLoader loader = new DefaultResourceLoader();
Resource resource = loader.getResource(location);
return resource.getInputStream();
}
/**
* Provides input stream.
*
* @param location
* @return input stream
* @throws IOException
*/
protected InputStream getInputStream(String location) throws IOException {
File file = new File(location);
if (file.exists()) {
return new FileInputStream(location);
}
ResourceLoader loader = new DefaultResourceLoader();
Resource resource = loader.getResource(location);
return resource.getInputStream();
}
/**
* Creates properties for given location.
*
* @param location
* @return properties for given location
* @throws MojoExecutionException
*/
protected Properties getProperties(String location) throws MojoExecutionException {
InputStream in = null;
try {
Properties properties = new Properties();
in = getInputStream(location);
if (location.toLowerCase().endsWith(".xml")) {
properties.loadFromXML(in);
} else {
properties.load(in);
}
return properties;
} catch (IOException e) {
throw new MojoExecutionException("Error reading properties file " + location, e);
} finally {
IOUtils.closeQuietly(in);
}
}
/**
* Creates properties for given location.
*
* @param location
* @return properties for given location
* @throws MojoExecutionException
*/
protected Properties getProperties(String location) throws MojoExecutionException {
InputStream in = null;
try {
Properties properties = new Properties();
in = getInputStream(location);
if (location.toLowerCase().endsWith(".xml")) {
properties.loadFromXML(in);
} else {
properties.load(in);
}
return properties;
} catch (IOException e) {
throw new MojoExecutionException("Error reading properties file " + location, e);
} finally {
IOUtils.closeQuietly(in);
}
}
/**
* Provides escape characters.
*
* @param escapeChars
* @return escape characters
*/
protected List<String> getEscapeChars(String escapeChars) {
List<String> tokens = getListFromCSV(escapeChars);
List<String> realTokens = new ArrayList<String>();
for (String token : tokens) {
String realToken = getRealToken(token);
realTokens.add(realToken);
}
return realTokens;
}
/**
* Provides escape characters.
*
* @param escapeChars
* @return escape characters
*/
protected List<String> getEscapeChars(String escapeChars) {
List<String> tokens = getListFromCSV(escapeChars);
List<String> realTokens = new ArrayList<String>();
for (String token : tokens) {
String realToken = getRealToken(token);
realTokens.add(realToken);
}
return realTokens;
}
/**
* Provides real token.
*
* @param token
* @return real token
*/
protected String getRealToken(String token) {
if (token.equalsIgnoreCase("CR")) {
return CR;
} else if (token.equalsIgnoreCase("LF")) {
return LF;
} else if (token.equalsIgnoreCase("TAB")) {
return TAB;
} else {
return token;
}
}
/**
* Provides real token.
*
* @param token
* @return real token
*/
protected String getRealToken(String token) {
if (token.equalsIgnoreCase("CR")) {
return CR;
} else if (token.equalsIgnoreCase("LF")) {
return LF;
} else if (token.equalsIgnoreCase("TAB")) {
return TAB;
} else {
return token;
}
}
/**
* Returns content.
*
* @param comment
* @param properties
* @param escapeTokens
* @return content
*/
protected String getContent(String comment, Properties properties, List<String> escapeTokens) {
List<String> names = new ArrayList<String>(properties.stringPropertyNames());
Collections.sort(names);
StringBuilder sb = new StringBuilder();
if (!StringUtils.isBlank(comment)) {
sb.append(comment);
}
for (String name : names) {
String value = properties.getProperty(name);
String escapedValue = escape(value, escapeTokens);
sb.append(name + "=" + escapedValue + "\n");
}
return sb.toString();
}
/**
* Returns content.
*
* @param comment
* @param properties
* @param escapeTokens
* @return content
*/
protected String getContent(String comment, Properties properties, List<String> escapeTokens) {
List<String> names = new ArrayList<String>(properties.stringPropertyNames());
Collections.sort(names);
StringBuilder sb = new StringBuilder();
if (!StringUtils.isBlank(comment)) {
sb.append(comment);
}
for (String name : names) {
String value = properties.getProperty(name);
String escapedValue = escape(value, escapeTokens);
sb.append(name + "=" + escapedValue + "\n");
}
return sb.toString();
}
/**
* Writes properties to given file.
*
* @param file
* @param comment
* @param properties
* @param escapeTokens
* @throws MojoExecutionException
*/
protected void writeProperties(
File file, String comment, Properties properties, List<String> escapeTokens)
throws MojoExecutionException {
try {
String content = getContent(comment, properties, escapeTokens);
FileUtils.writeStringToFile(file, content, ENCODING_UTF8);
} catch (IOException e) {
throw new MojoExecutionException("Error creating properties file", e);
}
}
/**
* Writes properties to given file.
*
* @param file
* @param comment
* @param properties
* @param escapeTokens
* @throws MojoExecutionException
*/
protected void writeProperties(
File file, String comment, Properties properties, List<String> escapeTokens)
throws MojoExecutionException {
try {
String content = getContent(comment, properties, escapeTokens);
FileUtils.writeStringToFile(file, content, ENCODING_UTF8);
} catch (IOException e) {
throw new MojoExecutionException("Error creating properties file", e);
}
}
/**
* Escapes characters.
*
* @param s
* @param escapeChars
* @return
*/
protected String escape(String s, List<String> escapeChars) {
String result = s;
for (String escapeChar : escapeChars) {
result = result.replace(escapeChar, getReplacementToken(escapeChar));
}
return result;
}
/**
* Escapes characters.
*
* @param s
* @param escapeChars
* @return
*/
protected String escape(String s, List<String> escapeChars) {
String result = s;
for (String escapeChar : escapeChars) {
result = result.replace(escapeChar, getReplacementToken(escapeChar));
}
return result;
}
/**
* Provides replacement token.
*
* @param escapeChar
* @return replacement token
*/
protected String getReplacementToken(String escapeChar) {
if (escapeChar.equals(CR)) {
return "\\r";
} else if (escapeChar.equals(LF)) {
return "\\n";
} else if (escapeChar.equals(TAB)) {
return "\\t";
} else {
return "\\" + escapeChar;
}
}
/**
* Provides replacement token.
*
* @param escapeChar
* @return replacement token
*/
protected String getReplacementToken(String escapeChar) {
if (escapeChar.equals(CR)) {
return "\\r";
} else if (escapeChar.equals(LF)) {
return "\\n";
} else if (escapeChar.equals(TAB)) {
return "\\t";
} else {
return "\\" + escapeChar;
}
}
/**
* Returns list from csv.
*
* @param csv
* @return list of values generated from CSV
*/
protected static final List<String> getListFromCSV(String csv) {
if (StringUtils.isBlank(csv)) {
return new ArrayList<String>();
}
List<String> list = new ArrayList<String>();
String[] tokens = StringUtils.split(csv, ",");
for (String token : tokens) {
list.add(token.trim());
}
return list;
}
/**
* Returns list from csv.
*
* @param csv
* @return list of values generated from CSV
*/
protected static final List<String> getListFromCSV(String csv) {
if (StringUtils.isBlank(csv)) {
return new ArrayList<String>();
}
List<String> list = new ArrayList<String>();
String[] tokens = StringUtils.split(csv, ",");
for (String token : tokens) {
list.add(token.trim());
}
return list;
}
public void setIncludeSystemProperties(boolean includeSystemProperties) {
this.includeSystemProperties = includeSystemProperties;
}
public void setIncludeSystemProperties(boolean includeSystemProperties) {
this.includeSystemProperties = includeSystemProperties;
}
public void setEscapeChars(String escapeChars) {
this.escapeChars = escapeChars;
}
public void setEscapeChars(String escapeChars) {
this.escapeChars = escapeChars;
}
public void setIncludeEnvironmentVariables(boolean includeEnvironmentVariables) {
this.includeEnvironmentVariables = includeEnvironmentVariables;
}
public void setIncludeEnvironmentVariables(boolean includeEnvironmentVariables) {
this.includeEnvironmentVariables = includeEnvironmentVariables;
}
public void setExclude(String exclude) {
this.exclude = exclude;
}
public void setExclude(String exclude) {
this.exclude = exclude;
}
public void setInclude(String include) {
this.include = include;
}
public void setInclude(String include) {
this.include = include;
}
public void setQuiet(boolean quiet) {
this.quiet = quiet;
}
public void setQuiet(boolean quiet) {
this.quiet = quiet;
}
/**
* Sets property files for which keys properties should be included.
*
* @param includePropertyKeysFromFiles
*/
public void setIncludePropertyKeysFromFiles(String[] includePropertyKeysFromFiles) {
if (includePropertyKeysFromFiles != null) {
this.includePropertyKeysFromFiles =
Arrays.copyOf(
includePropertyKeysFromFiles, includePropertyKeysFromFiles.length);
}
}
/**
* Sets property files for which keys properties should be included.
*
* @param includePropertyKeysFromFiles
*/
public void setIncludePropertyKeysFromFiles(String[] includePropertyKeysFromFiles) {
if (includePropertyKeysFromFiles != null) {
this.includePropertyKeysFromFiles = Arrays
.copyOf(includePropertyKeysFromFiles, includePropertyKeysFromFiles.length);
}
}
}

131
dhp-build/dhp-build-properties-maven-plugin/src/test/java/eu/dnetlib/maven/plugin/properties/GenerateOoziePropertiesMojoTest.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.maven.plugin.properties;
import static eu.dnetlib.maven.plugin.properties.GenerateOoziePropertiesMojo.PROPERTY_NAME_SANDBOX_NAME;
@ -10,87 +11,87 @@ import org.junit.jupiter.api.Test;
/** @author mhorst, claudio.atzori */
public class GenerateOoziePropertiesMojoTest {
private GenerateOoziePropertiesMojo mojo = new GenerateOoziePropertiesMojo();
private final GenerateOoziePropertiesMojo mojo = new GenerateOoziePropertiesMojo();
@BeforeEach
public void clearSystemProperties() {
System.clearProperty(PROPERTY_NAME_SANDBOX_NAME);
System.clearProperty(PROPERTY_NAME_WF_SOURCE_DIR);
}
@BeforeEach
public void clearSystemProperties() {
System.clearProperty(PROPERTY_NAME_SANDBOX_NAME);
System.clearProperty(PROPERTY_NAME_WF_SOURCE_DIR);
}
@Test
public void testExecuteEmpty() throws Exception {
// execute
mojo.execute();
@Test
public void testExecuteEmpty() throws Exception {
// execute
mojo.execute();
// assert
assertNull(System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
// assert
assertNull(System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
@Test
public void testExecuteSandboxNameAlreadySet() throws Exception {
// given
String workflowSourceDir = "eu/dnetlib/dhp/wf/transformers";
String sandboxName = "originalSandboxName";
System.setProperty(PROPERTY_NAME_WF_SOURCE_DIR, workflowSourceDir);
System.setProperty(PROPERTY_NAME_SANDBOX_NAME, sandboxName);
@Test
public void testExecuteSandboxNameAlreadySet() throws Exception {
// given
String workflowSourceDir = "eu/dnetlib/dhp/wf/transformers";
String sandboxName = "originalSandboxName";
System.setProperty(PROPERTY_NAME_WF_SOURCE_DIR, workflowSourceDir);
System.setProperty(PROPERTY_NAME_SANDBOX_NAME, sandboxName);
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertEquals(sandboxName, System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
// assert
assertEquals(sandboxName, System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
@Test
public void testExecuteEmptyWorkflowSourceDir() throws Exception {
// given
String workflowSourceDir = "";
System.setProperty(PROPERTY_NAME_WF_SOURCE_DIR, workflowSourceDir);
@Test
public void testExecuteEmptyWorkflowSourceDir() throws Exception {
// given
String workflowSourceDir = "";
System.setProperty(PROPERTY_NAME_WF_SOURCE_DIR, workflowSourceDir);
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertNull(System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
// assert
assertNull(System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
@Test
public void testExecuteNullSandboxNameGenerated() throws Exception {
// given
String workflowSourceDir = "eu/dnetlib/dhp/";
System.setProperty(PROPERTY_NAME_WF_SOURCE_DIR, workflowSourceDir);
@Test
public void testExecuteNullSandboxNameGenerated() throws Exception {
// given
String workflowSourceDir = "eu/dnetlib/dhp/";
System.setProperty(PROPERTY_NAME_WF_SOURCE_DIR, workflowSourceDir);
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertNull(System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
// assert
assertNull(System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
@Test
public void testExecute() throws Exception {
// given
String workflowSourceDir = "eu/dnetlib/dhp/wf/transformers";
System.setProperty(PROPERTY_NAME_WF_SOURCE_DIR, workflowSourceDir);
@Test
public void testExecute() throws Exception {
// given
String workflowSourceDir = "eu/dnetlib/dhp/wf/transformers";
System.setProperty(PROPERTY_NAME_WF_SOURCE_DIR, workflowSourceDir);
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertEquals("wf/transformers", System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
// assert
assertEquals("wf/transformers", System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
@Test
public void testExecuteWithoutRoot() throws Exception {
// given
String workflowSourceDir = "wf/transformers";
System.setProperty(PROPERTY_NAME_WF_SOURCE_DIR, workflowSourceDir);
@Test
public void testExecuteWithoutRoot() throws Exception {
// given
String workflowSourceDir = "wf/transformers";
System.setProperty(PROPERTY_NAME_WF_SOURCE_DIR, workflowSourceDir);
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertEquals("wf/transformers", System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
// assert
assertEquals("wf/transformers", System.getProperty(PROPERTY_NAME_SANDBOX_NAME));
}
}

582
dhp-build/dhp-build-properties-maven-plugin/src/test/java/eu/dnetlib/maven/plugin/properties/WritePredefinedProjectPropertiesTest.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.maven.plugin.properties;
import static eu.dnetlib.maven.plugin.properties.WritePredefinedProjectProperties.PROPERTY_PREFIX_ENV;
@ -7,6 +8,7 @@ import static org.mockito.Mockito.lenient;
import java.io.*;
import java.util.Properties;
import org.apache.maven.plugin.MojoExecutionException;
import org.apache.maven.project.MavenProject;
import org.junit.jupiter.api.*;
@ -20,343 +22,353 @@ import org.mockito.junit.jupiter.MockitoExtension;
@ExtendWith(MockitoExtension.class)
public class WritePredefinedProjectPropertiesTest {
@Mock private MavenProject mavenProject;
@Mock
private MavenProject mavenProject;
private WritePredefinedProjectProperties mojo;
private WritePredefinedProjectProperties mojo;
@BeforeEach
public void init(@TempDir File testFolder) {
MockitoAnnotations.initMocks(this);
mojo = new WritePredefinedProjectProperties();
mojo.outputFile = getPropertiesFileLocation(testFolder);
mojo.project = mavenProject;
lenient().doReturn(new Properties()).when(mavenProject).getProperties();
}
@BeforeEach
public void init(@TempDir File testFolder) {
MockitoAnnotations.initMocks(this);
mojo = new WritePredefinedProjectProperties();
mojo.outputFile = getPropertiesFileLocation(testFolder);
mojo.project = mavenProject;
lenient().doReturn(new Properties()).when(mavenProject).getProperties();
}
// ----------------------------------- TESTS ---------------------------------------------
// ----------------------------------- TESTS ---------------------------------------------
@Test
public void testExecuteEmpty() throws Exception {
// execute
mojo.execute();
@Test
public void testExecuteEmpty() throws Exception {
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(mojo.outputFile.getParentFile());
assertEquals(0, storedProperties.size());
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(mojo.outputFile.getParentFile());
assertEquals(0, storedProperties.size());
}
@Test
public void testExecuteWithProjectProperties() throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
doReturn(projectProperties).when(mavenProject).getProperties();
@Test
public void testExecuteWithProjectProperties() throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
doReturn(projectProperties).when(mavenProject).getProperties();
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(mojo.outputFile.getParentFile());
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(key));
assertEquals(value, storedProperties.getProperty(key));
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(mojo.outputFile.getParentFile());
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(key));
assertEquals(value, storedProperties.getProperty(key));
}
@Test()
public void testExecuteWithProjectPropertiesAndInvalidOutputFile(@TempDir File testFolder) {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
doReturn(projectProperties).when(mavenProject).getProperties();
mojo.outputFile = testFolder;
@Test()
public void testExecuteWithProjectPropertiesAndInvalidOutputFile(@TempDir File testFolder) {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
doReturn(projectProperties).when(mavenProject).getProperties();
mojo.outputFile = testFolder;
// execute
Assertions.assertThrows(MojoExecutionException.class, () -> mojo.execute());
}
// execute
Assertions.assertThrows(MojoExecutionException.class, () -> mojo.execute());
}
@Test
public void testExecuteWithProjectPropertiesExclusion(@TempDir File testFolder)
throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String excludedKey = "excludedPropertyKey";
String excludedValue = "excludedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(excludedKey, excludedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
mojo.setExclude(excludedKey);
@Test
public void testExecuteWithProjectPropertiesExclusion(@TempDir File testFolder) throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String excludedKey = "excludedPropertyKey";
String excludedValue = "excludedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(excludedKey, excludedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
mojo.setExclude(excludedKey);
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(key));
assertEquals(value, storedProperties.getProperty(key));
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(key));
assertEquals(value, storedProperties.getProperty(key));
}
@Test
public void testExecuteWithProjectPropertiesInclusion(@TempDir File testFolder)
throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
mojo.setInclude(includedKey);
@Test
public void testExecuteWithProjectPropertiesInclusion(@TempDir File testFolder) throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
mojo.setInclude(includedKey);
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(includedKey));
assertEquals(includedValue, storedProperties.getProperty(includedKey));
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(includedKey));
assertEquals(includedValue, storedProperties.getProperty(includedKey));
}
@Test
public void testExecuteIncludingPropertyKeysFromFile(@TempDir File testFolder)
throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
@Test
public void testExecuteIncludingPropertyKeysFromFile(@TempDir File testFolder) throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
File includedPropertiesFile = new File(testFolder, "included.properties");
Properties includedProperties = new Properties();
includedProperties.setProperty(includedKey, "irrelevantValue");
includedProperties.store(new FileWriter(includedPropertiesFile), null);
File includedPropertiesFile = new File(testFolder, "included.properties");
Properties includedProperties = new Properties();
includedProperties.setProperty(includedKey, "irrelevantValue");
includedProperties.store(new FileWriter(includedPropertiesFile), null);
mojo.setIncludePropertyKeysFromFiles(
new String[] {includedPropertiesFile.getAbsolutePath()});
mojo.setIncludePropertyKeysFromFiles(new String[] {
includedPropertiesFile.getAbsolutePath()
});
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(includedKey));
assertEquals(includedValue, storedProperties.getProperty(includedKey));
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(includedKey));
assertEquals(includedValue, storedProperties.getProperty(includedKey));
}
@Test
public void testExecuteIncludingPropertyKeysFromClasspathResource(@TempDir File testFolder)
throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
@Test
public void testExecuteIncludingPropertyKeysFromClasspathResource(@TempDir File testFolder)
throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
mojo.setIncludePropertyKeysFromFiles(
new String[] {"/eu/dnetlib/maven/plugin/properties/included.properties"});
mojo
.setIncludePropertyKeysFromFiles(
new String[] {
"/eu/dnetlib/maven/plugin/properties/included.properties"
});
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(includedKey));
assertEquals(includedValue, storedProperties.getProperty(includedKey));
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(includedKey));
assertEquals(includedValue, storedProperties.getProperty(includedKey));
}
@Test
public void testExecuteIncludingPropertyKeysFromBlankLocation() {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
@Test
public void testExecuteIncludingPropertyKeysFromBlankLocation() {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
mojo.setIncludePropertyKeysFromFiles(new String[] {""});
mojo.setIncludePropertyKeysFromFiles(new String[] {
""
});
// execute
Assertions.assertThrows(MojoExecutionException.class, () -> mojo.execute());
}
// execute
Assertions.assertThrows(MojoExecutionException.class, () -> mojo.execute());
}
@Test
public void testExecuteIncludingPropertyKeysFromXmlFile(@TempDir File testFolder)
throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
@Test
public void testExecuteIncludingPropertyKeysFromXmlFile(@TempDir File testFolder)
throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
File includedPropertiesFile = new File(testFolder, "included.xml");
Properties includedProperties = new Properties();
includedProperties.setProperty(includedKey, "irrelevantValue");
includedProperties.storeToXML(new FileOutputStream(includedPropertiesFile), null);
File includedPropertiesFile = new File(testFolder, "included.xml");
Properties includedProperties = new Properties();
includedProperties.setProperty(includedKey, "irrelevantValue");
includedProperties.storeToXML(new FileOutputStream(includedPropertiesFile), null);
mojo.setIncludePropertyKeysFromFiles(
new String[] {includedPropertiesFile.getAbsolutePath()});
mojo.setIncludePropertyKeysFromFiles(new String[] {
includedPropertiesFile.getAbsolutePath()
});
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(includedKey));
assertEquals(includedValue, storedProperties.getProperty(includedKey));
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(1, storedProperties.size());
assertTrue(storedProperties.containsKey(includedKey));
assertEquals(includedValue, storedProperties.getProperty(includedKey));
}
@Test
public void testExecuteIncludingPropertyKeysFromInvalidXmlFile(@TempDir File testFolder)
throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
@Test
public void testExecuteIncludingPropertyKeysFromInvalidXmlFile(@TempDir File testFolder)
throws Exception {
// given
String key = "projectPropertyKey";
String value = "projectPropertyValue";
String includedKey = "includedPropertyKey";
String includedValue = "includedPropertyValue";
Properties projectProperties = new Properties();
projectProperties.setProperty(key, value);
projectProperties.setProperty(includedKey, includedValue);
doReturn(projectProperties).when(mavenProject).getProperties();
File includedPropertiesFile = new File(testFolder, "included.xml");
Properties includedProperties = new Properties();
includedProperties.setProperty(includedKey, "irrelevantValue");
includedProperties.store(new FileOutputStream(includedPropertiesFile), null);
File includedPropertiesFile = new File(testFolder, "included.xml");
Properties includedProperties = new Properties();
includedProperties.setProperty(includedKey, "irrelevantValue");
includedProperties.store(new FileOutputStream(includedPropertiesFile), null);
mojo.setIncludePropertyKeysFromFiles(
new String[] {includedPropertiesFile.getAbsolutePath()});
mojo.setIncludePropertyKeysFromFiles(new String[] {
includedPropertiesFile.getAbsolutePath()
});
// execute
Assertions.assertThrows(MojoExecutionException.class, () -> mojo.execute());
}
// execute
Assertions.assertThrows(MojoExecutionException.class, () -> mojo.execute());
}
@Test
public void testExecuteWithQuietModeOn(@TempDir File testFolder) throws Exception {
// given
mojo.setQuiet(true);
mojo.setIncludePropertyKeysFromFiles(new String[] {"invalid location"});
@Test
public void testExecuteWithQuietModeOn(@TempDir File testFolder) throws Exception {
// given
mojo.setQuiet(true);
mojo.setIncludePropertyKeysFromFiles(new String[] {
"invalid location"
});
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(0, storedProperties.size());
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertEquals(0, storedProperties.size());
}
@Test
public void testExecuteIncludingPropertyKeysFromInvalidFile() {
// given
mojo.setIncludePropertyKeysFromFiles(new String[] {"invalid location"});
@Test
public void testExecuteIncludingPropertyKeysFromInvalidFile() {
// given
mojo.setIncludePropertyKeysFromFiles(new String[] {
"invalid location"
});
// execute
Assertions.assertThrows(MojoExecutionException.class, () -> mojo.execute());
}
// execute
Assertions.assertThrows(MojoExecutionException.class, () -> mojo.execute());
}
@Test
public void testExecuteWithEnvironmentProperties(@TempDir File testFolder) throws Exception {
// given
mojo.setIncludeEnvironmentVariables(true);
@Test
public void testExecuteWithEnvironmentProperties(@TempDir File testFolder) throws Exception {
// given
mojo.setIncludeEnvironmentVariables(true);
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertTrue(storedProperties.size() > 0);
for (Object currentKey : storedProperties.keySet()) {
assertTrue(((String) currentKey).startsWith(PROPERTY_PREFIX_ENV));
}
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertTrue(storedProperties.size() > 0);
for (Object currentKey : storedProperties.keySet()) {
assertTrue(((String) currentKey).startsWith(PROPERTY_PREFIX_ENV));
}
}
@Test
public void testExecuteWithSystemProperties(@TempDir File testFolder) throws Exception {
// given
String key = "systemPropertyKey";
String value = "systemPropertyValue";
System.setProperty(key, value);
mojo.setIncludeSystemProperties(true);
@Test
public void testExecuteWithSystemProperties(@TempDir File testFolder) throws Exception {
// given
String key = "systemPropertyKey";
String value = "systemPropertyValue";
System.setProperty(key, value);
mojo.setIncludeSystemProperties(true);
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertTrue(storedProperties.size() > 0);
assertTrue(storedProperties.containsKey(key));
assertEquals(value, storedProperties.getProperty(key));
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertTrue(storedProperties.size() > 0);
assertTrue(storedProperties.containsKey(key));
assertEquals(value, storedProperties.getProperty(key));
}
@Test
public void testExecuteWithSystemPropertiesAndEscapeChars(@TempDir File testFolder)
throws Exception {
// given
String key = "systemPropertyKey ";
String value = "systemPropertyValue";
System.setProperty(key, value);
mojo.setIncludeSystemProperties(true);
String escapeChars = "cr,lf,tab,|";
mojo.setEscapeChars(escapeChars);
@Test
public void testExecuteWithSystemPropertiesAndEscapeChars(@TempDir File testFolder)
throws Exception {
// given
String key = "systemPropertyKey ";
String value = "systemPropertyValue";
System.setProperty(key, value);
mojo.setIncludeSystemProperties(true);
String escapeChars = "cr,lf,tab,|";
mojo.setEscapeChars(escapeChars);
// execute
mojo.execute();
// execute
mojo.execute();
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertTrue(storedProperties.size() > 0);
assertFalse(storedProperties.containsKey(key));
assertTrue(storedProperties.containsKey(key.trim()));
assertEquals(value, storedProperties.getProperty(key.trim()));
}
// assert
assertTrue(mojo.outputFile.exists());
Properties storedProperties = getStoredProperties(testFolder);
assertTrue(storedProperties.size() > 0);
assertFalse(storedProperties.containsKey(key));
assertTrue(storedProperties.containsKey(key.trim()));
assertEquals(value, storedProperties.getProperty(key.trim()));
}
// ----------------------------------- PRIVATE -------------------------------------------
// ----------------------------------- PRIVATE -------------------------------------------
private File getPropertiesFileLocation(File testFolder) {
return new File(testFolder, "test.properties");
}
private File getPropertiesFileLocation(File testFolder) {
return new File(testFolder, "test.properties");
}
private Properties getStoredProperties(File testFolder)
throws FileNotFoundException, IOException {
Properties properties = new Properties();
properties.load(new FileInputStream(getPropertiesFileLocation(testFolder)));
return properties;
}
private Properties getStoredProperties(File testFolder)
throws IOException {
Properties properties = new Properties();
properties.load(new FileInputStream(getPropertiesFileLocation(testFolder)));
return properties;
}
}

50
dhp-build/dhp-code-style/pom.xml Normal file
View File

@ -0,0 +1,50 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp-code-style</artifactId>
<version>1.1.7-SNAPSHOT</version>
<packaging>jar</packaging>
<description>This module contains resources supporting common code style conventions</description>
<distributionManagement>
<snapshotRepository>
<id>dnet45-snapshots</id>
<name>DNet45 Snapshots</name>
<url>http://maven.research-infrastructures.eu/nexus/content/repositories/dnet45-snapshots</url>
<layout>default</layout>
</snapshotRepository>
<repository>
<id>dnet45-releases</id>
<url>http://maven.research-infrastructures.eu/nexus/content/repositories/dnet45-releases</url>
</repository>
</distributionManagement>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-project-info-reports-plugin</artifactId>
<version>3.0.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-site-plugin</artifactId>
<version>3.7.1</version>
</plugin>
</plugins>
</pluginManagement>
</build>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
</project>

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dhp-build/dhp-code-style/src/main/resources/eclipse/formatter_aosp.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<profiles version="10">
<profile kind="CodeFormatterProfile" name="Android" version="10">
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<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_qualified_allocation_expression" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_assignment" value="0"/>
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<setting id="org.eclipse.jdt.core.formatter.alignment_for_compact_if" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_conditional_expression" value="80"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_enum_constants" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_expressions_in_array_initializer" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_multiple_fields" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_parameters_in_constructor_declaration" value="16"/>
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<setting id="org.eclipse.jdt.core.formatter.alignment_for_throws_clause_in_method_declaration" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_after_imports" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_after_package" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_field" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_first_class_body_declaration" value="0"/>
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<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_member_type" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_method" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_new_chunk" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_package" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_between_type_declarations" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_annotation_type_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_anonymous_type_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_array_initializer" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_block" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_block_in_case" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_constructor_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_enum_constant" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_enum_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_method_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_switch" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_type_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.comment.clear_blank_lines" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_comments" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_header" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_html" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_source_code" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.comment.indent_parameter_description" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.comment.indent_root_tags" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.comment.insert_new_line_before_root_tags" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.insert_new_line_for_parameter" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.line_length" value="120"/>
<setting id="org.eclipse.jdt.core.formatter.compact_else_if" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.continuation_indentation" value="2"/>
<setting id="org.eclipse.jdt.core.formatter.continuation_indentation_for_array_initializer" value="2"/>
<setting id="org.eclipse.jdt.core.formatter.format_guardian_clause_on_one_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_annotation_declaration_header" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_enum_constant_header" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_enum_declaration_header" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_type_header" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.indent_breaks_compare_to_cases" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.indent_empty_lines" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.indent_statements_compare_to_block" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.indent_statements_compare_to_body" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.indent_switchstatements_compare_to_cases" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.indent_switchstatements_compare_to_switch" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.indentation.size" value="4"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_opening_brace_in_array_initializer" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_at_end_of_file_if_missing" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_catch_in_try_statement" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_closing_brace_in_array_initializer" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_else_in_if_statement" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_finally_in_try_statement" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_while_in_do_statement" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_annotation_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_anonymous_type_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_block" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_enum_constant" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_enum_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_method_body" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_type_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_and_in_type_parameter" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_assignment_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_at_in_annotation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_at_in_annotation_type_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_binary_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_closing_angle_bracket_in_type_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_closing_angle_bracket_in_type_parameters" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_closing_brace_in_block" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_closing_paren_in_cast" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_assert" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_case" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_conditional" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_for" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_labeled_statement" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_allocation_expression" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_annotation" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_array_initializer" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_constructor_declaration_parameters" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_constructor_declaration_throws" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_enum_constant_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_enum_declarations" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_explicitconstructorcall_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_for_increments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_for_inits" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_declaration_parameters" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_declaration_throws" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_invocation_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_field_declarations" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_local_declarations" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_parameterized_type_reference" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_superinterfaces" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_type_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_type_parameters" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_ellipsis" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_parameterized_type_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_type_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_type_parameters" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_brace_in_array_initializer" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_bracket_in_array_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_annotation" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_catch" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_while" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_question_in_wildcard" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_catch" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_constructor_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_enum_constant" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_for" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_if" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_method_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_method_invocation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_parenthesized_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_switch" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_synchronized" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_while" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_parenthesized_expression_in_return" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_postfix_operator" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_question_in_conditional" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_question_in_wildcard" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon_in_for" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_unary_operator" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_brackets_in_array_type_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_braces_in_array_initializer" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_brackets_in_array_allocation_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_annotation_type_member_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_constructor_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_enum_constant" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_method_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_method_invocation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.keep_else_statement_on_same_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.keep_empty_array_initializer_on_one_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.keep_imple_if_on_one_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.keep_then_statement_on_same_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.lineSplit" value="100"/>
<setting id="org.eclipse.jdt.core.formatter.number_of_blank_lines_at_beginning_of_method_body" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.number_of_empty_lines_to_preserve" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.put_empty_statement_on_new_line" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.tabulation.char" value="tab"/>
<setting id="org.eclipse.jdt.core.formatter.tabulation.size" value="4"/>
<setting id="org.eclipse.jdt.core.formatter.use_tabs_only_for_leading_indentations" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.join_wrapped_lines" value="false"/>
</profile>
</profiles>

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dhp-build/dhp-code-style/src/main/resources/eclipse/formatter_dnet.xml Normal file
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@ -0,0 +1,727 @@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<profiles version="18">
<profile kind="CodeFormatterProfile" name="Android_custom" version="18">
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_ellipsis" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_enum_declarations" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_allocation_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_at_in_annotation_type_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.parentheses_positions_in_for_statment" value="common_lines"/>
<setting id="org.eclipse.jdt.core.formatter.comment.new_lines_at_block_boundaries" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_logical_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_constructor_declaration_parameters" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.insert_new_line_for_parameter" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_package" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.parentheses_positions_in_method_invocation" value="common_lines"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_enum_constant" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_after_imports" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_while" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.insert_new_line_before_root_tags" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_annotation_type_member_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_method_declaration_throws" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.parentheses_positions_in_switch_statement" value="common_lines"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_javadoc_comments" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.indentation.size" value="4"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_postfix_operator" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.parentheses_positions_in_enum_constant_declaration" value="common_lines"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_for_increments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_type_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_arrow_in_switch_default" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_inits" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_semicolon_in_for" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.align_with_spaces" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.disabling_tag" value="@formatter:off"/>
<setting id="org.eclipse.jdt.core.formatter.continuation_indentation" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.number_of_blank_lines_before_code_block" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_switch_case_expressions" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_enum_constants" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_imports" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.number_of_blank_lines_at_end_of_method_body" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_after_package" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_local_declarations" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.parentheses_positions_in_if_while_statement" value="common_lines"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_enum_constant" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_parameterized_type_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.indent_root_tags" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.wrap_before_or_operator_multicatch" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.enabling_tag" value="@formatter:on"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_closing_brace_in_block" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.count_line_length_from_starting_position" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_parenthesized_expression_in_return" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_throws_clause_in_method_declaration" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_parameter" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.wrap_before_multiplicative_operator" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.keep_then_statement_on_same_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_field" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_explicitconstructorcall_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_prefix_operator" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_brace_in_array_initializer" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_for" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_catch" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_type_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_method" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_switch" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_parameterized_type_references" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_anonymous_type_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_logical_operator" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_parenthesized_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.keep_annotation_declaration_on_one_line" value="one_line_never"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_enum_constant" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_multiplicative_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.never_indent_line_comments_on_first_column" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_and_in_type_parameter" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_for_inits" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.indent_statements_compare_to_block" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_anonymous_type_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_question_in_wildcard" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_annotation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_method_invocation_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_switch" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.align_tags_descriptions_grouped" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.comment.line_length" value="120"/>
<setting id="org.eclipse.jdt.core.formatter.use_on_off_tags" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.keep_method_body_on_one_line" value="one_line_never"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_brackets_in_array_allocation_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.keep_loop_body_block_on_one_line" value="one_line_never"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_enum_constant" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_method_invocation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_assignment_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_type_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_for" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.preserve_white_space_between_code_and_line_comments" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_local_variable" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_method_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_abstract_method" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.keep_enum_constant_declaration_on_one_line" value="one_line_never"/>
<setting id="org.eclipse.jdt.core.formatter.align_variable_declarations_on_columns" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_method_invocation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_union_type_in_multicatch" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_for" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.keep_type_declaration_on_one_line" value="one_line_never"/>
<setting id="org.eclipse.jdt.core.formatter.number_of_blank_lines_at_beginning_of_method_body" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_closing_angle_bracket_in_type_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.keep_else_statement_on_same_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.parentheses_positions_in_catch_clause" value="common_lines"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_additive_operator" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_parameterized_type_reference" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_array_initializer" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_field_declarations" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_annotation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_explicit_constructor_call" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_relational_operator" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.keep_anonymous_type_declaration_on_one_line" value="one_line_never"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_switch_case_expressions" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.wrap_before_shift_operator" value="true"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_superinterfaces" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_default" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_question_in_conditional" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_block" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_constructor_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_lambda_body" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.number_of_blank_lines_at_end_of_code_block" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.compact_else_if" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_type_parameters" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_catch" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_method_invocation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_bitwise_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.put_empty_statement_on_new_line" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_parameters_in_constructor_declaration" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_type_parameters" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_invocation_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_method_invocation" value="32"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_throws_clause_in_constructor_declaration" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_compact_loops" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.comment.clear_blank_lines_in_block_comment" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_catch_in_try_statement" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_try" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.keep_simple_for_body_on_same_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_at_end_of_file_if_missing" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.clear_blank_lines_in_javadoc_comment" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_relational_operator" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_array_initializer" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_unary_operator" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_expressions_in_array_initializer" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.format_line_comment_starting_on_first_column" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.number_of_empty_lines_to_preserve" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.parentheses_positions_in_annotation" value="common_lines"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_case" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_ellipsis" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_additive_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon_in_try_resources" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_assert" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_if" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_type_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_and_in_type_parameter" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_string_concatenation" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_parenthesized_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_line_comments" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_labeled_statement" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.alignment_for_assignment" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_module_statements" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_type_header" value="true"/>
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<setting id="org.eclipse.jdt.core.formatter.number_of_blank_lines_after_code_block" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.comment.align_tags_names_descriptions" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_enum_constant" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_superinterfaces_in_type_declaration" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.keep_if_then_body_block_on_one_line" value="one_line_never"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_first_class_body_declaration" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_conditional_expression" value="80"/>
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<setting id="org.eclipse.jdt.core.formatter.format_guardian_clause_on_one_line" value="false"/>
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<setting id="org.eclipse.jdt.core.formatter.align_assignment_statements_on_columns" value="false"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_block" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_arrow_in_switch_default" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.comment.insert_new_line_between_different_tags" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_conditional_expression_chain" value="0"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_type_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_cast" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_block_comments" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_lambda_arrow" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_method_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.indent_tag_description" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.keep_imple_if_on_one_line" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_enum_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_parameters_in_method_declaration" value="80"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_brackets_in_array_type_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_type_parameters" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_string_concatenation" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon_in_for" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_declaration_throws" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_allocation_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_after_last_class_body_declaration" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.indent_statements_compare_to_body" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_multiple_fields" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_enum_constant_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.keep_simple_while_body_on_same_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_prefix_operator" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.wrap_before_logical_operator" value="true"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_catch" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_between_statement_group_in_switch" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_bracket_in_array_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_annotation" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_enum_constant_arguments" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_case" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_multiple_local_declarations" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_annotation_type_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.keep_enum_declaration_on_one_line" value="one_line_if_empty"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_method_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.wrap_outer_expressions_when_nested" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_closing_paren_in_cast" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_enum_constant" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_type_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_multiplicative_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_package" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_for" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_synchronized" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_increments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_annotation_type_member_declaration" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_while" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_enum_constant" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_explicitconstructorcall_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_annotation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_type_parameters" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_enum_constant_header" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_string_concatenation" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_lambda_arrow" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.join_lines_in_comments" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_angle_bracket_in_type_parameters" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_question_in_conditional" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.indent_parameter_description" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.number_of_blank_lines_at_beginning_of_code_block" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_finally_in_try_statement" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.tabulation.char" value="tab"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_relational_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_multiple_field_declarations" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.wrap_before_string_concatenation" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_between_import_groups" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.lineSplit" value="160"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_annotation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_switch" value="insert"/>
</profile>
</profiles>

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dhp-build/dhp-code-style/src/main/resources/eclipse/formatter_google.xml Normal file
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@ -0,0 +1,337 @@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<profiles version="13">
<profile kind="CodeFormatterProfile" name="GoogleStyle" version="13">
<setting id="org.eclipse.jdt.core.formatter.comment.insert_new_line_before_root_tags" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.disabling_tag" value="@formatter:off"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_annotation" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_type_parameters" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_type_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_type_arguments" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_brace_in_array_initializer" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.new_lines_at_block_boundaries" value="true"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_annotation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_field" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_while" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.use_on_off_tags" value="true"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_else_in_if_statement" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_at_in_annotation" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.alignment_for_multiple_fields" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_parameter" value="1040"/>
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<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_type.count_dependent" value="1585|-1|1585"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_conditional_expression" value="80"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_for" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_catch_in_try_statement" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.alignment_for_superinterfaces_in_enum_declaration.count_dependent" value="16|4|49"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_superinterfaces" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_new_chunk" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_binary_operator" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.alignment_for_cascading_method_invocation_with_arguments" value="16"/>
<setting id="org.eclipse.jdt.core.compiler.source" value="1.7"/>
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<setting id="org.eclipse.jdt.core.formatter.comment.format_line_comments" value="true"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_enum_declarations" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.join_wrapped_lines" value="true"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_for" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_switch" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_unary_operator" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.comment.indent_parameter_description" value="false"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_switch" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.comment.clear_blank_lines_in_block_comment" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_type_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.lineSplit" value="100"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_if" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_selector_in_method_invocation.count_dependent" value="16|4|48"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_explicitconstructorcall_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_constructor_declaration" value="insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_method" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.indentation.size" value="4"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_method_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.enabling_tag" value="@formatter:on"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_enum_constant" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_package" value="1585"/>
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<setting id="org.eclipse.jdt.core.formatter.alignment_for_assignment" value="16"/>
<setting id="org.eclipse.jdt.core.compiler.problem.assertIdentifier" value="error"/>
<setting id="org.eclipse.jdt.core.formatter.tabulation.char" value="space"/>
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<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_method" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.wrap_outer_expressions_when_nested" value="true"/>
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<setting id="org.eclipse.jdt.core.formatter.brace_position_for_annotation_type_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_method_body" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_bracket_in_array_allocation_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_enum_constant" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_annotation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_at_in_annotation_type_declaration" value="do not insert"/>
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<setting id="org.eclipse.jdt.core.formatter.brace_position_for_switch" value="end_of_line"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_before_parenthesized_expression_in_return" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_annotation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_question_in_conditional" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_question_in_wildcard" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_try" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_bracket_in_array_allocation_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.preserve_white_space_between_code_and_line_comments" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_parenthesized_expression_in_throw" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_type_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.compiler.problem.enumIdentifier" value="error"/>
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<setting id="org.eclipse.jdt.core.formatter.indent_switchstatements_compare_to_switch" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.comment_new_line_at_start_of_html_paragraph" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_ellipsis" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_block" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comment_prefix" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_inits" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_method_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.compact_else_if" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.wrap_non_simple_parameter_annotation" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.wrap_before_or_operator_multicatch" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_array_initializer" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_for_increments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_method" value="1585"/>
<setting id="org.eclipse.jdt.core.formatter.format_line_comment_starting_on_first_column" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_bracket_in_array_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_field" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.indent_root_tags" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_enum_constant" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_enum_declarations" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_union_type_in_multicatch" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_explicitconstructorcall_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_switch" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_method_declaration_parameters" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_superinterfaces" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_allocation_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.tabulation.size" value="2"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_type_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_opening_brace_in_array_initializer" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_closing_brace_in_block" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_enum_constant" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_type_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_constructor_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_constructor_declaration_throws" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_if" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_method_invocation.count_dependent" value="16|5|80"/>
<setting id="org.eclipse.jdt.core.formatter.comment.clear_blank_lines_in_javadoc_comment" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_parameter.count_dependent" value="1040|-1|1040"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_throws_clause_in_constructor_declaration" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_assignment_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_assignment_operator" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_package.count_dependent" value="1585|-1|1585"/>
<setting id="org.eclipse.jdt.core.formatter.indent_empty_lines" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_synchronized" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_closing_paren_in_cast" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_declaration_parameters" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.force_if_else_statement_brace" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_block_in_case" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.number_of_empty_lines_to_preserve" value="3"/>
<setting id="org.eclipse.jdt.core.formatter.wrap_non_simple_package_annotation" value="true"/>
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<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_catch" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_constructor_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_method_invocation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_bracket_in_array_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_qualified_allocation_expression" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation.count_dependent" value="16|-1|16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_and_in_type_parameter" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_type" value="1585"/>
<setting id="org.eclipse.jdt.core.compiler.compliance" value="1.7"/>
<setting id="org.eclipse.jdt.core.formatter.continuation_indentation_for_array_initializer" value="2"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_brackets_in_array_allocation_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_at_in_annotation_type_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_cast" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_unary_operator" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_new_anonymous_class" value="20"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_angle_bracket_in_parameterized_type_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_local_variable.count_dependent" value="1585|-1|1585"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_anonymous_type_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.keep_empty_array_initializer_on_one_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_enum_declaration" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_field.count_dependent" value="1585|-1|1585"/>
<setting id="org.eclipse.jdt.core.formatter.keep_imple_if_on_one_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_constructor_declaration_parameters" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_closing_angle_bracket_in_type_parameters" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_labeled_statement" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_at_end_of_file_if_missing" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_for" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_parameterized_type_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_parameters_in_constructor_declaration.count_dependent" value="16|5|80"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_superinterfaces_in_type_declaration" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_enum_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_binary_expression" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_while" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_type" value="insert"/>
<setting id="org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode" value="enabled"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_try" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.put_empty_statement_on_new_line" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_label" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_parameter" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_type_parameters" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_method_invocation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_javadoc_comments" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_enum_constant" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_while_in_do_statement" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_enum_constant.count_dependent" value="16|-1|16"/>
<setting id="org.eclipse.jdt.core.formatter.comment.line_length" value="100"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_package" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_between_import_groups" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_enum_constant_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_constructor_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.number_of_blank_lines_at_beginning_of_method_body" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_conditional" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_type_header" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_annotation_type_member_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.wrap_before_binary_operator" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_between_type_declarations" value="2"/>
<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_enum_declaration_header" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_synchronized" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_superinterfaces_in_enum_declaration" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.indent_statements_compare_to_block" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.join_lines_in_comments" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_question_in_conditional" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_multiple_field_declarations" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_compact_if" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_for_inits" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.indent_switchstatements_compare_to_cases" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_array_initializer" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_default" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_and_in_type_parameter" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_constructor_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_imports" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_assert" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_field" value="1585"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_html" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_throws_clause_in_method_declaration" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_angle_bracket_in_type_parameters" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_allocation_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_anonymous_type_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_conditional" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_parameterized_type_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_for" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_expressions_in_array_initializer.count_dependent" value="16|5|80"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_postfix_operator" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_source_code" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_synchronized" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_allocation_expression" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_constructor_declaration_throws" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_parameters_in_method_declaration" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_brace_in_array_initializer" value="do not insert"/>
<setting id="org.eclipse.jdt.core.compiler.codegen.targetPlatform" value="1.7"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_resources_in_try" value="80"/>
<setting id="org.eclipse.jdt.core.formatter.use_tabs_only_for_leading_indentations" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_header" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_block_comments" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_enum_constant" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_enum_constants" value="0"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_parenthesized_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_annotation_declaration_header" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_block" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_parenthesized_expression" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_catch" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_multiple_local_declarations" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_superinterfaces_in_type_declaration.count_dependent" value="16|4|48"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_switch" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_increments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_method.count_dependent" value="1585|-1|1585"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_method_invocation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_assert" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.brace_position_for_type_declaration" value="end_of_line"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_array_initializer" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_braces_in_array_initializer" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_binary_expression.count_dependent" value="16|-1|16"/>
<setting id="org.eclipse.jdt.core.formatter.wrap_non_simple_member_annotation" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_annotations_on_local_variable" value="1585"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_method_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon_in_for" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_explicit_constructor_call.count_dependent" value="16|5|80"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_catch" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_parameterized_type_reference" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_field_declarations" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_annotation" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_generic_type_arguments.count_dependent" value="16|-1|16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_parameterized_type_reference" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression.count_dependent" value="16|5|80"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_invocation_arguments" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_parameters_in_method_declaration.count_dependent" value="16|5|80"/>
<setting id="org.eclipse.jdt.core.formatter.comment.new_lines_at_javadoc_boundaries" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.blank_lines_after_imports" value="1"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_local_declarations" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_enum_constant_header" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_semicolon_in_for" value="insert"/>
<setting id="org.eclipse.jdt.core.formatter.never_indent_line_comments_on_first_column" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon_in_try_resources" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.alignment_for_for_statement" value="16"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_type_arguments" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.never_indent_block_comments_on_first_column" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.keep_then_statement_on_same_line" value="false"/>
</profile>
</profiles>

4
dhp-build/pom.xml
View File

@ -8,7 +8,11 @@
</parent>
<artifactId>dhp-build</artifactId>
<packaging>pom</packaging>
<description>This module is a container for the build tools used in dnet-hadoop</description>
<modules>
<module>dhp-code-style</module>
<module>dhp-build-assembly-resources</module>
<module>dhp-build-properties-maven-plugin</module>
</modules>

2
dhp-common/pom.xml
View File

@ -12,6 +12,8 @@
<artifactId>dhp-common</artifactId>
<packaging>jar</packaging>
<description>This module contains common utilities meant to be used across the dnet-hadoop submodules</description>
<dependencies>
<dependency>

57
dhp-common/src/main/java/eu/dnetlib/collector/worker/model/ApiDescriptor.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.collector.worker.model;
import java.util.HashMap;
@ -5,43 +6,43 @@ import java.util.Map;
public class ApiDescriptor {
private String id;
private String id;
private String baseUrl;
private String baseUrl;
private String protocol;
private String protocol;
private Map<String, String> params = new HashMap<>();
private Map<String, String> params = new HashMap<>();
public String getBaseUrl() {
return baseUrl;
}
public String getBaseUrl() {
return baseUrl;
}
public void setBaseUrl(final String baseUrl) {
this.baseUrl = baseUrl;
}
public void setBaseUrl(final String baseUrl) {
this.baseUrl = baseUrl;
}
public String getId() {
return id;
}
public String getId() {
return id;
}
public void setId(final String id) {
this.id = id;
}
public void setId(final String id) {
this.id = id;
}
public Map<String, String> getParams() {
return params;
}
public Map<String, String> getParams() {
return params;
}
public void setParams(final HashMap<String, String> params) {
this.params = params;
}
public void setParams(final HashMap<String, String> params) {
this.params = params;
}
public String getProtocol() {
return protocol;
}
public String getProtocol() {
return protocol;
}
public void setProtocol(final String protocol) {
this.protocol = protocol;
}
public void setProtocol(final String protocol) {
this.protocol = protocol;
}
}

162
dhp-common/src/main/java/eu/dnetlib/data/mdstore/manager/common/model/MDStore.java
View File

@ -1,7 +1,9 @@
package eu.dnetlib.data.mdstore.manager.common.model;
import java.io.Serializable;
import java.util.UUID;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Id;
@ -11,107 +13,107 @@ import javax.persistence.Table;
@Table(name = "mdstores")
public class MDStore implements Serializable {
/** */
private static final long serialVersionUID = 3160530489149700055L;
/** */
private static final long serialVersionUID = 3160530489149700055L;
@Id
@Column(name = "id")
private String id;
@Id
@Column(name = "id")
private String id;
@Column(name = "format")
private String format;
@Column(name = "format")
private String format;
@Column(name = "layout")
private String layout;
@Column(name = "layout")
private String layout;
@Column(name = "interpretation")
private String interpretation;
@Column(name = "interpretation")
private String interpretation;
@Column(name = "datasource_name")
private String datasourceName;
@Column(name = "datasource_name")
private String datasourceName;
@Column(name = "datasource_id")
private String datasourceId;
@Column(name = "datasource_id")
private String datasourceId;
@Column(name = "api_id")
private String apiId;
@Column(name = "api_id")
private String apiId;
public String getId() {
return id;
}
public String getId() {
return id;
}
public void setId(final String id) {
this.id = id;
}
public void setId(final String id) {
this.id = id;
}
public String getFormat() {
return format;
}
public String getFormat() {
return format;
}
public void setFormat(final String format) {
this.format = format;
}
public void setFormat(final String format) {
this.format = format;
}
public String getLayout() {
return layout;
}
public String getLayout() {
return layout;
}
public void setLayout(final String layout) {
this.layout = layout;
}
public void setLayout(final String layout) {
this.layout = layout;
}
public String getInterpretation() {
return interpretation;
}
public String getInterpretation() {
return interpretation;
}
public void setInterpretation(final String interpretation) {
this.interpretation = interpretation;
}
public void setInterpretation(final String interpretation) {
this.interpretation = interpretation;
}
public String getDatasourceName() {
return datasourceName;
}
public String getDatasourceName() {
return datasourceName;
}
public void setDatasourceName(final String datasourceName) {
this.datasourceName = datasourceName;
}
public void setDatasourceName(final String datasourceName) {
this.datasourceName = datasourceName;
}
public String getDatasourceId() {
return datasourceId;
}
public String getDatasourceId() {
return datasourceId;
}
public void setDatasourceId(final String datasourceId) {
this.datasourceId = datasourceId;
}
public void setDatasourceId(final String datasourceId) {
this.datasourceId = datasourceId;
}
public String getApiId() {
return apiId;
}
public String getApiId() {
return apiId;
}
public void setApiId(final String apiId) {
this.apiId = apiId;
}
public void setApiId(final String apiId) {
this.apiId = apiId;
}
public static MDStore newInstance(
final String format, final String layout, final String interpretation) {
return newInstance(format, layout, interpretation, null, null, null);
}
public static MDStore newInstance(
final String format, final String layout, final String interpretation) {
return newInstance(format, layout, interpretation, null, null, null);
}
public static MDStore newInstance(
final String format,
final String layout,
final String interpretation,
final String dsName,
final String dsId,
final String apiId) {
final MDStore md = new MDStore();
md.setId("md-" + UUID.randomUUID());
md.setFormat(format);
md.setLayout(layout);
md.setInterpretation(interpretation);
md.setDatasourceName(dsName);
md.setDatasourceId(dsId);
md.setApiId(apiId);
return md;
}
public static MDStore newInstance(
final String format,
final String layout,
final String interpretation,
final String dsName,
final String dsId,
final String apiId) {
final MDStore md = new MDStore();
md.setId("md-" + UUID.randomUUID());
md.setFormat(format);
md.setLayout(layout);
md.setInterpretation(interpretation);
md.setDatasourceName(dsName);
md.setDatasourceId(dsId);
md.setApiId(apiId);
return md;
}
}

58
dhp-common/src/main/java/eu/dnetlib/data/mdstore/manager/common/model/MDStoreCurrentVersion.java
View File

@ -1,6 +1,8 @@
package eu.dnetlib.data.mdstore.manager.common.model;
import java.io.Serializable;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Id;
@ -10,40 +12,40 @@ import javax.persistence.Table;
@Table(name = "mdstore_current_versions")
public class MDStoreCurrentVersion implements Serializable {
/** */
private static final long serialVersionUID = -4757725888593745773L;
/** */
private static final long serialVersionUID = -4757725888593745773L;
@Id
@Column(name = "mdstore")
private String mdstore;
@Id
@Column(name = "mdstore")
private String mdstore;
@Column(name = "current_version")
private String currentVersion;
@Column(name = "current_version")
private String currentVersion;
public String getMdstore() {
return mdstore;
}
public String getMdstore() {
return mdstore;
}
public void setMdstore(final String mdstore) {
this.mdstore = mdstore;
}
public void setMdstore(final String mdstore) {
this.mdstore = mdstore;
}
public String getCurrentVersion() {
return currentVersion;
}
public String getCurrentVersion() {
return currentVersion;
}
public void setCurrentVersion(final String currentVersion) {
this.currentVersion = currentVersion;
}
public void setCurrentVersion(final String currentVersion) {
this.currentVersion = currentVersion;
}
public static MDStoreCurrentVersion newInstance(final String mdId, final String versionId) {
final MDStoreCurrentVersion cv = new MDStoreCurrentVersion();
cv.setMdstore(mdId);
cv.setCurrentVersion(versionId);
return cv;
}
public static MDStoreCurrentVersion newInstance(final String mdId, final String versionId) {
final MDStoreCurrentVersion cv = new MDStoreCurrentVersion();
cv.setMdstore(mdId);
cv.setCurrentVersion(versionId);
return cv;
}
public static MDStoreCurrentVersion newInstance(final MDStoreVersion v) {
return newInstance(v.getMdstore(), v.getId());
}
public static MDStoreCurrentVersion newInstance(final MDStoreVersion v) {
return newInstance(v.getMdstore(), v.getId());
}
}

126
dhp-common/src/main/java/eu/dnetlib/data/mdstore/manager/common/model/MDStoreVersion.java
View File

@ -1,7 +1,9 @@
package eu.dnetlib.data.mdstore.manager.common.model;
import java.io.Serializable;
import java.util.Date;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Id;
@ -13,85 +15,85 @@ import javax.persistence.TemporalType;
@Table(name = "mdstore_versions")
public class MDStoreVersion implements Serializable {
/** */
private static final long serialVersionUID = -4763494442274298339L;
/** */
private static final long serialVersionUID = -4763494442274298339L;
@Id
@Column(name = "id")
private String id;
@Id
@Column(name = "id")
private String id;
@Column(name = "mdstore")
private String mdstore;
@Column(name = "mdstore")
private String mdstore;
@Column(name = "writing")
private boolean writing;
@Column(name = "writing")
private boolean writing;
@Column(name = "readcount")
private int readCount = 0;
@Column(name = "readcount")
private int readCount = 0;
@Column(name = "lastupdate")
@Temporal(TemporalType.TIMESTAMP)
private Date lastUpdate;
@Column(name = "lastupdate")
@Temporal(TemporalType.TIMESTAMP)
private Date lastUpdate;
@Column(name = "size")
private long size = 0;
@Column(name = "size")
private long size = 0;
public static MDStoreVersion newInstance(final String mdId, final boolean writing) {
final MDStoreVersion t = new MDStoreVersion();
t.setId(mdId + "-" + new Date().getTime());
t.setMdstore(mdId);
t.setLastUpdate(null);
t.setWriting(writing);
t.setReadCount(0);
t.setSize(0);
return t;
}
public static MDStoreVersion newInstance(final String mdId, final boolean writing) {
final MDStoreVersion t = new MDStoreVersion();
t.setId(mdId + "-" + new Date().getTime());
t.setMdstore(mdId);
t.setLastUpdate(null);
t.setWriting(writing);
t.setReadCount(0);
t.setSize(0);
return t;
}
public String getId() {
return id;
}
public String getId() {
return id;
}
public void setId(final String id) {
this.id = id;
}
public void setId(final String id) {
this.id = id;
}
public String getMdstore() {
return mdstore;
}
public String getMdstore() {
return mdstore;
}
public void setMdstore(final String mdstore) {
this.mdstore = mdstore;
}
public void setMdstore(final String mdstore) {
this.mdstore = mdstore;
}
public boolean isWriting() {
return writing;
}
public boolean isWriting() {
return writing;
}
public void setWriting(final boolean writing) {
this.writing = writing;
}
public void setWriting(final boolean writing) {
this.writing = writing;
}
public int getReadCount() {
return readCount;
}
public int getReadCount() {
return readCount;
}
public void setReadCount(final int readCount) {
this.readCount = readCount;
}
public void setReadCount(final int readCount) {
this.readCount = readCount;
}
public Date getLastUpdate() {
return lastUpdate;
}
public Date getLastUpdate() {
return lastUpdate;
}
public void setLastUpdate(final Date lastUpdate) {
this.lastUpdate = lastUpdate;
}
public void setLastUpdate(final Date lastUpdate) {
this.lastUpdate = lastUpdate;
}
public long getSize() {
return size;
}
public long getSize() {
return size;
}
public void setSize(final long size) {
this.size = size;
}
public void setSize(final long size) {
this.size = size;
}
}

186
dhp-common/src/main/java/eu/dnetlib/data/mdstore/manager/common/model/MDStoreWithInfo.java
View File

@ -1,7 +1,9 @@
package eu.dnetlib.data.mdstore.manager.common.model;
import java.io.Serializable;
import java.util.Date;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Id;
@ -13,129 +15,129 @@ import javax.persistence.TemporalType;
@Table(name = "mdstores_with_info")
public class MDStoreWithInfo implements Serializable {
/** */
private static final long serialVersionUID = -8445784770687571492L;
/** */
private static final long serialVersionUID = -8445784770687571492L;
@Id
@Column(name = "id")
private String id;
@Id
@Column(name = "id")
private String id;
@Column(name = "format")
private String format;
@Column(name = "format")
private String format;
@Column(name = "layout")
private String layout;
@Column(name = "layout")
private String layout;
@Column(name = "interpretation")
private String interpretation;
@Column(name = "interpretation")
private String interpretation;
@Column(name = "datasource_name")
private String datasourceName;
@Column(name = "datasource_name")
private String datasourceName;
@Column(name = "datasource_id")
private String datasourceId;
@Column(name = "datasource_id")
private String datasourceId;
@Column(name = "api_id")
private String apiId;
@Column(name = "api_id")
private String apiId;
@Column(name = "current_version")
private String currentVersion;
@Column(name = "current_version")
private String currentVersion;
@Column(name = "lastupdate")
@Temporal(TemporalType.TIMESTAMP)
private Date lastUpdate;
@Column(name = "lastupdate")
@Temporal(TemporalType.TIMESTAMP)
private Date lastUpdate;
@Column(name = "size")
private long size = 0;
@Column(name = "size")
private long size = 0;
@Column(name = "n_versions")
private long numberOfVersions = 0;
@Column(name = "n_versions")
private long numberOfVersions = 0;
public String getId() {
return id;
}
public String getId() {
return id;
}
public void setId(final String id) {
this.id = id;
}
public void setId(final String id) {
this.id = id;
}
public String getFormat() {
return format;
}
public String getFormat() {
return format;
}
public void setFormat(final String format) {
this.format = format;
}
public void setFormat(final String format) {
this.format = format;
}
public String getLayout() {
return layout;
}
public String getLayout() {
return layout;
}
public void setLayout(final String layout) {
this.layout = layout;
}
public void setLayout(final String layout) {
this.layout = layout;
}
public String getInterpretation() {
return interpretation;
}
public String getInterpretation() {
return interpretation;
}
public void setInterpretation(final String interpretation) {
this.interpretation = interpretation;
}
public void setInterpretation(final String interpretation) {
this.interpretation = interpretation;
}
public String getDatasourceName() {
return datasourceName;
}
public String getDatasourceName() {
return datasourceName;
}
public void setDatasourceName(final String datasourceName) {
this.datasourceName = datasourceName;
}
public void setDatasourceName(final String datasourceName) {
this.datasourceName = datasourceName;
}
public String getDatasourceId() {
return datasourceId;
}
public String getDatasourceId() {
return datasourceId;
}
public void setDatasourceId(final String datasourceId) {
this.datasourceId = datasourceId;
}
public void setDatasourceId(final String datasourceId) {
this.datasourceId = datasourceId;
}
public String getApiId() {
return apiId;
}
public String getApiId() {
return apiId;
}
public void setApiId(final String apiId) {
this.apiId = apiId;
}
public void setApiId(final String apiId) {
this.apiId = apiId;
}
public String getCurrentVersion() {
return currentVersion;
}
public String getCurrentVersion() {
return currentVersion;
}
public void setCurrentVersion(final String currentVersion) {
this.currentVersion = currentVersion;
}
public void setCurrentVersion(final String currentVersion) {
this.currentVersion = currentVersion;
}
public Date getLastUpdate() {
return lastUpdate;
}
public Date getLastUpdate() {
return lastUpdate;
}
public void setLastUpdate(final Date lastUpdate) {
this.lastUpdate = lastUpdate;
}
public void setLastUpdate(final Date lastUpdate) {
this.lastUpdate = lastUpdate;
}
public long getSize() {
return size;
}
public long getSize() {
return size;
}
public void setSize(final long size) {
this.size = size;
}
public void setSize(final long size) {
this.size = size;
}
public long getNumberOfVersions() {
return numberOfVersions;
}
public long getNumberOfVersions() {
return numberOfVersions;
}
public void setNumberOfVersions(final long numberOfVersions) {
this.numberOfVersions = numberOfVersions;
}
public void setNumberOfVersions(final long numberOfVersions) {
this.numberOfVersions = numberOfVersions;
}
}

138
dhp-common/src/main/java/eu/dnetlib/dhp/application/ArgumentApplicationParser.java
View File

@ -1,6 +1,6 @@
package eu.dnetlib.dhp.application;
import com.fasterxml.jackson.databind.ObjectMapper;
import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.io.Serializable;
@ -8,89 +8,91 @@ import java.io.StringWriter;
import java.util.*;
import java.util.zip.GZIPInputStream;
import java.util.zip.GZIPOutputStream;
import org.apache.commons.cli.*;
import org.apache.commons.codec.binary.Base64;
import org.apache.commons.io.IOUtils;
import com.fasterxml.jackson.databind.ObjectMapper;
public class ArgumentApplicationParser implements Serializable {
private final Options options = new Options();
private final Map<String, String> objectMap = new HashMap<>();
private final Options options = new Options();
private final Map<String, String> objectMap = new HashMap<>();
private final List<String> compressedValues = new ArrayList<>();
private final List<String> compressedValues = new ArrayList<>();
public ArgumentApplicationParser(final String json_configuration) throws Exception {
final ObjectMapper mapper = new ObjectMapper();
final OptionsParameter[] configuration =
mapper.readValue(json_configuration, OptionsParameter[].class);
createOptionMap(configuration);
}
public ArgumentApplicationParser(final String json_configuration) throws Exception {
final ObjectMapper mapper = new ObjectMapper();
final OptionsParameter[] configuration = mapper.readValue(json_configuration, OptionsParameter[].class);
createOptionMap(configuration);
}
public ArgumentApplicationParser(final OptionsParameter[] configuration) {
createOptionMap(configuration);
}
public ArgumentApplicationParser(final OptionsParameter[] configuration) {
createOptionMap(configuration);
}
private void createOptionMap(final OptionsParameter[] configuration) {
private void createOptionMap(final OptionsParameter[] configuration) {
Arrays.stream(configuration)
.map(
conf -> {
final Option o =
new Option(
conf.getParamName(), true, conf.getParamDescription());
o.setLongOpt(conf.getParamLongName());
o.setRequired(conf.isParamRequired());
if (conf.isCompressed()) {
compressedValues.add(conf.getParamLongName());
}
return o;
})
.forEach(options::addOption);
Arrays
.stream(configuration)
.map(
conf -> {
final Option o = new Option(conf.getParamName(), true, conf.getParamDescription());
o.setLongOpt(conf.getParamLongName());
o.setRequired(conf.isParamRequired());
if (conf.isCompressed()) {
compressedValues.add(conf.getParamLongName());
}
return o;
})
.forEach(options::addOption);
// HelpFormatter formatter = new HelpFormatter();
// formatter.printHelp("myapp", null, options, null, true);
// HelpFormatter formatter = new HelpFormatter();
// formatter.printHelp("myapp", null, options, null, true);
}
}
public static String decompressValue(final String abstractCompressed) {
try {
byte[] byteArray = Base64.decodeBase64(abstractCompressed.getBytes());
GZIPInputStream gis = new GZIPInputStream(new ByteArrayInputStream(byteArray));
final StringWriter stringWriter = new StringWriter();
IOUtils.copy(gis, stringWriter);
return stringWriter.toString();
} catch (Throwable e) {
System.out.println("Wrong value to decompress:" + abstractCompressed);
throw new RuntimeException(e);
}
}
public static String decompressValue(final String abstractCompressed) {
try {
byte[] byteArray = Base64.decodeBase64(abstractCompressed.getBytes());
GZIPInputStream gis = new GZIPInputStream(new ByteArrayInputStream(byteArray));
final StringWriter stringWriter = new StringWriter();
IOUtils.copy(gis, stringWriter);
return stringWriter.toString();
} catch (Throwable e) {
System.out.println("Wrong value to decompress:" + abstractCompressed);
throw new RuntimeException(e);
}
}
public static String compressArgument(final String value) throws Exception {
ByteArrayOutputStream out = new ByteArrayOutputStream();
GZIPOutputStream gzip = new GZIPOutputStream(out);
gzip.write(value.getBytes());
gzip.close();
return java.util.Base64.getEncoder().encodeToString(out.toByteArray());
}
public static String compressArgument(final String value) throws Exception {
ByteArrayOutputStream out = new ByteArrayOutputStream();
GZIPOutputStream gzip = new GZIPOutputStream(out);
gzip.write(value.getBytes());
gzip.close();
return java.util.Base64.getEncoder().encodeToString(out.toByteArray());
}
public void parseArgument(final String[] args) throws Exception {
CommandLineParser parser = new BasicParser();
CommandLine cmd = parser.parse(options, args);
Arrays.stream(cmd.getOptions())
.forEach(
it ->
objectMap.put(
it.getLongOpt(),
compressedValues.contains(it.getLongOpt())
? decompressValue(it.getValue())
: it.getValue()));
}
public void parseArgument(final String[] args) throws Exception {
CommandLineParser parser = new BasicParser();
CommandLine cmd = parser.parse(options, args);
Arrays
.stream(cmd.getOptions())
.forEach(
it -> objectMap
.put(
it.getLongOpt(),
compressedValues.contains(it.getLongOpt())
? decompressValue(it.getValue())
: it.getValue()));
}
public String get(final String key) {
return objectMap.get(key);
}
public String get(final String key) {
return objectMap.get(key);
}
public Map<String, String> getObjectMap() {
return objectMap;
}
public Map<String, String> getObjectMap() {
return objectMap;
}
}

50
dhp-common/src/main/java/eu/dnetlib/dhp/application/OptionsParameter.java
View File

@ -1,36 +1,38 @@
package eu.dnetlib.dhp.application;
public class OptionsParameter {
private String paramName;
private String paramLongName;
private String paramDescription;
private boolean paramRequired;
private boolean compressed;
private String paramName;
private String paramLongName;
private String paramDescription;
private boolean paramRequired;
private boolean compressed;
public OptionsParameter() {}
public OptionsParameter() {
}
public String getParamName() {
return paramName;
}
public String getParamName() {
return paramName;
}
public String getParamLongName() {
return paramLongName;
}
public String getParamLongName() {
return paramLongName;
}
public String getParamDescription() {
return paramDescription;
}
public String getParamDescription() {
return paramDescription;
}
public boolean isParamRequired() {
return paramRequired;
}
public boolean isParamRequired() {
return paramRequired;
}
public boolean isCompressed() {
return compressed;
}
public boolean isCompressed() {
return compressed;
}
public void setCompressed(boolean compressed) {
this.compressed = compressed;
}
public void setCompressed(boolean compressed) {
this.compressed = compressed;
}
}

79
dhp-common/src/main/java/eu/dnetlib/dhp/common/FunctionalInterfaceSupport.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.common;
import java.io.Serializable;
@ -6,46 +7,48 @@ import java.util.function.Supplier;
/** Provides serializable and throwing extensions to standard functional interfaces. */
public class FunctionalInterfaceSupport {
private FunctionalInterfaceSupport() {}
private FunctionalInterfaceSupport() {
}
/**
* Serializable supplier of any kind of objects. To be used withing spark processing pipelines
* when supplying functions externally.
*
* @param <T>
*/
@FunctionalInterface
public interface SerializableSupplier<T> extends Supplier<T>, Serializable {}
/**
* Serializable supplier of any kind of objects. To be used withing spark processing pipelines when supplying
* functions externally.
*
* @param <T>
*/
@FunctionalInterface
public interface SerializableSupplier<T> extends Supplier<T>, Serializable {
}
/**
* Extension of consumer accepting functions throwing an exception.
*
* @param <T>
* @param <E>
*/
@FunctionalInterface
public interface ThrowingConsumer<T, E extends Exception> {
void accept(T t) throws E;
}
/**
* Extension of consumer accepting functions throwing an exception.
*
* @param <T>
* @param <E>
*/
@FunctionalInterface
public interface ThrowingConsumer<T, E extends Exception> {
void accept(T t) throws E;
}
/**
* Extension of supplier accepting functions throwing an exception.
*
* @param <T>
* @param <E>
*/
@FunctionalInterface
public interface ThrowingSupplier<T, E extends Exception> {
T get() throws E;
}
/**
* Extension of supplier accepting functions throwing an exception.
*
* @param <T>
* @param <E>
*/
@FunctionalInterface
public interface ThrowingSupplier<T, E extends Exception> {
T get() throws E;
}
/**
* Extension of runnable accepting functions throwing an exception.
*
* @param <E>
*/
@FunctionalInterface
public interface ThrowingRunnable<E extends Exception> {
void run() throws E;
}
/**
* Extension of runnable accepting functions throwing an exception.
*
* @param <E>
*/
@FunctionalInterface
public interface ThrowingRunnable<E extends Exception> {
void run() throws E;
}
}

103
dhp-common/src/main/java/eu/dnetlib/dhp/common/HdfsSupport.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.common;
import static eu.dnetlib.dhp.common.ThrowingSupport.rethrowAsRuntimeException;
@ -5,6 +6,7 @@ import static eu.dnetlib.dhp.common.ThrowingSupport.rethrowAsRuntimeException;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.FileStatus;
import org.apache.hadoop.fs.FileSystem;
@ -14,58 +16,59 @@ import org.slf4j.LoggerFactory;
/** HDFS utility methods. */
public class HdfsSupport {
private static final Logger logger = LoggerFactory.getLogger(HdfsSupport.class);
private static final Logger logger = LoggerFactory.getLogger(HdfsSupport.class);
private HdfsSupport() {}
private HdfsSupport() {
}
/**
* Checks a path (file or dir) exists on HDFS.
*
* @param path Path to be checked
* @param configuration Configuration of hadoop env
*/
public static boolean exists(String path, Configuration configuration) {
logger.info("Removing path: {}", path);
return rethrowAsRuntimeException(
() -> {
Path f = new Path(path);
FileSystem fileSystem = FileSystem.get(configuration);
return fileSystem.exists(f);
});
}
/**
* Checks a path (file or dir) exists on HDFS.
*
* @param path Path to be checked
* @param configuration Configuration of hadoop env
*/
public static boolean exists(String path, Configuration configuration) {
logger.info("Removing path: {}", path);
return rethrowAsRuntimeException(
() -> {
Path f = new Path(path);
FileSystem fileSystem = FileSystem.get(configuration);
return fileSystem.exists(f);
});
}
/**
* Removes a path (file or dir) from HDFS.
*
* @param path Path to be removed
* @param configuration Configuration of hadoop env
*/
public static void remove(String path, Configuration configuration) {
logger.info("Removing path: {}", path);
rethrowAsRuntimeException(
() -> {
Path f = new Path(path);
FileSystem fileSystem = FileSystem.get(configuration);
if (fileSystem.exists(f)) {
fileSystem.delete(f, true);
}
});
}
/**
* Removes a path (file or dir) from HDFS.
*
* @param path Path to be removed
* @param configuration Configuration of hadoop env
*/
public static void remove(String path, Configuration configuration) {
logger.info("Removing path: {}", path);
rethrowAsRuntimeException(
() -> {
Path f = new Path(path);
FileSystem fileSystem = FileSystem.get(configuration);
if (fileSystem.exists(f)) {
fileSystem.delete(f, true);
}
});
}
/**
* Lists hadoop files located below path or alternatively lists subdirs under path.
*
* @param path Path to be listed for hadoop files
* @param configuration Configuration of hadoop env
* @return List with string locations of hadoop files
*/
public static List<String> listFiles(String path, Configuration configuration) {
logger.info("Listing files in path: {}", path);
return rethrowAsRuntimeException(
() ->
Arrays.stream(FileSystem.get(configuration).listStatus(new Path(path)))
.filter(FileStatus::isDirectory)
.map(x -> x.getPath().toString())
.collect(Collectors.toList()));
}
/**
* Lists hadoop files located below path or alternatively lists subdirs under path.
*
* @param path Path to be listed for hadoop files
* @param configuration Configuration of hadoop env
* @return List with string locations of hadoop files
*/
public static List<String> listFiles(String path, Configuration configuration) {
logger.info("Listing files in path: {}", path);
return rethrowAsRuntimeException(
() -> Arrays
.stream(FileSystem.get(configuration).listStatus(new Path(path)))
.filter(FileStatus::isDirectory)
.map(x -> x.getPath().toString())
.collect(Collectors.toList()));
}
}

128
dhp-common/src/main/java/eu/dnetlib/dhp/common/SparkSessionSupport.java
View File

@ -1,81 +1,75 @@
package eu.dnetlib.dhp.common;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.ThrowingConsumer;
import java.util.Objects;
import java.util.function.Function;
import org.apache.spark.SparkConf;
import org.apache.spark.sql.SparkSession;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.ThrowingConsumer;
/** SparkSession utility methods. */
public class SparkSessionSupport {
private SparkSessionSupport() {}
private SparkSessionSupport() {
}
/**
* Runs a given function using SparkSession created using default builder and supplied
* SparkConf. Stops SparkSession when SparkSession is managed. Allows to reuse SparkSession
* created externally.
*
* @param conf SparkConf instance
* @param isSparkSessionManaged When true will stop SparkSession
* @param fn Consumer to be applied to constructed SparkSession
*/
public static void runWithSparkSession(
SparkConf conf,
Boolean isSparkSessionManaged,
ThrowingConsumer<SparkSession, Exception> fn) {
runWithSparkSession(
c -> SparkSession.builder().config(c).getOrCreate(),
conf,
isSparkSessionManaged,
fn);
}
/**
* Runs a given function using SparkSession created using default builder and supplied SparkConf. Stops SparkSession
* when SparkSession is managed. Allows to reuse SparkSession created externally.
*
* @param conf SparkConf instance
* @param isSparkSessionManaged When true will stop SparkSession
* @param fn Consumer to be applied to constructed SparkSession
*/
public static void runWithSparkSession(
SparkConf conf, Boolean isSparkSessionManaged, ThrowingConsumer<SparkSession, Exception> fn) {
runWithSparkSession(
c -> SparkSession.builder().config(c).getOrCreate(), conf, isSparkSessionManaged, fn);
}
/**
* Runs a given function using SparkSession created with hive support and using default builder
* and supplied SparkConf. Stops SparkSession when SparkSession is managed. Allows to reuse
* SparkSession created externally.
*
* @param conf SparkConf instance
* @param isSparkSessionManaged When true will stop SparkSession
* @param fn Consumer to be applied to constructed SparkSession
*/
public static void runWithSparkHiveSession(
SparkConf conf,
Boolean isSparkSessionManaged,
ThrowingConsumer<SparkSession, Exception> fn) {
runWithSparkSession(
c -> SparkSession.builder().config(c).enableHiveSupport().getOrCreate(),
conf,
isSparkSessionManaged,
fn);
}
/**
* Runs a given function using SparkSession created with hive support and using default builder and supplied
* SparkConf. Stops SparkSession when SparkSession is managed. Allows to reuse SparkSession created externally.
*
* @param conf SparkConf instance
* @param isSparkSessionManaged When true will stop SparkSession
* @param fn Consumer to be applied to constructed SparkSession
*/
public static void runWithSparkHiveSession(
SparkConf conf, Boolean isSparkSessionManaged, ThrowingConsumer<SparkSession, Exception> fn) {
runWithSparkSession(
c -> SparkSession.builder().config(c).enableHiveSupport().getOrCreate(),
conf,
isSparkSessionManaged,
fn);
}
/**
* Runs a given function using SparkSession created using supplied builder and supplied
* SparkConf. Stops SparkSession when SparkSession is managed. Allows to reuse SparkSession
* created externally.
*
* @param sparkSessionBuilder Builder of SparkSession
* @param conf SparkConf instance
* @param isSparkSessionManaged When true will stop SparkSession
* @param fn Consumer to be applied to constructed SparkSession
*/
public static void runWithSparkSession(
Function<SparkConf, SparkSession> sparkSessionBuilder,
SparkConf conf,
Boolean isSparkSessionManaged,
ThrowingConsumer<SparkSession, Exception> fn) {
SparkSession spark = null;
try {
spark = sparkSessionBuilder.apply(conf);
fn.accept(spark);
} catch (Exception e) {
throw new RuntimeException(e);
} finally {
if (Objects.nonNull(spark) && isSparkSessionManaged) {
spark.stop();
}
}
}
/**
* Runs a given function using SparkSession created using supplied builder and supplied SparkConf. Stops
* SparkSession when SparkSession is managed. Allows to reuse SparkSession created externally.
*
* @param sparkSessionBuilder Builder of SparkSession
* @param conf SparkConf instance
* @param isSparkSessionManaged When true will stop SparkSession
* @param fn Consumer to be applied to constructed SparkSession
*/
public static void runWithSparkSession(
Function<SparkConf, SparkSession> sparkSessionBuilder,
SparkConf conf,
Boolean isSparkSessionManaged,
ThrowingConsumer<SparkSession, Exception> fn) {
SparkSession spark = null;
try {
spark = sparkSessionBuilder.apply(conf);
fn.accept(spark);
} catch (Exception e) {
throw new RuntimeException(e);
} finally {
if (Objects.nonNull(spark) && isSparkSessionManaged) {
spark.stop();
}
}
}
}

124
dhp-common/src/main/java/eu/dnetlib/dhp/common/ThrowingSupport.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.common;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.ThrowingRunnable;
@ -6,69 +7,70 @@ import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.ThrowingSupplier;
/** Exception handling utility methods. */
public class ThrowingSupport {
private ThrowingSupport() {}
private ThrowingSupport() {
}
/**
* Executes given runnable and rethrows any exceptions as RuntimeException.
*
* @param fn Runnable to be executed
* @param <E> Type of exception thrown
*/
public static <E extends Exception> void rethrowAsRuntimeException(ThrowingRunnable<E> fn) {
try {
fn.run();
} catch (Exception e) {
throw new RuntimeException(e);
}
}
/**
* Executes given runnable and rethrows any exceptions as RuntimeException.
*
* @param fn Runnable to be executed
* @param <E> Type of exception thrown
*/
public static <E extends Exception> void rethrowAsRuntimeException(ThrowingRunnable<E> fn) {
try {
fn.run();
} catch (Exception e) {
throw new RuntimeException(e);
}
}
/**
* Executes given runnable and rethrows any exceptions as RuntimeException with custom message.
*
* @param fn Runnable to be executed
* @param msg Message to be set for rethrown exception
* @param <E> Type of exception thrown
*/
public static <E extends Exception> void rethrowAsRuntimeException(
ThrowingRunnable<E> fn, String msg) {
try {
fn.run();
} catch (Exception e) {
throw new RuntimeException(msg, e);
}
}
/**
* Executes given runnable and rethrows any exceptions as RuntimeException with custom message.
*
* @param fn Runnable to be executed
* @param msg Message to be set for rethrown exception
* @param <E> Type of exception thrown
*/
public static <E extends Exception> void rethrowAsRuntimeException(
ThrowingRunnable<E> fn, String msg) {
try {
fn.run();
} catch (Exception e) {
throw new RuntimeException(msg, e);
}
}
/**
* Executes given supplier and rethrows any exceptions as RuntimeException.
*
* @param fn Supplier to be executed
* @param <T> Type of returned value
* @param <E> Type of exception thrown
* @return Result of supplier execution
*/
public static <T, E extends Exception> T rethrowAsRuntimeException(ThrowingSupplier<T, E> fn) {
try {
return fn.get();
} catch (Exception e) {
throw new RuntimeException(e);
}
}
/**
* Executes given supplier and rethrows any exceptions as RuntimeException.
*
* @param fn Supplier to be executed
* @param <T> Type of returned value
* @param <E> Type of exception thrown
* @return Result of supplier execution
*/
public static <T, E extends Exception> T rethrowAsRuntimeException(ThrowingSupplier<T, E> fn) {
try {
return fn.get();
} catch (Exception e) {
throw new RuntimeException(e);
}
}
/**
* Executes given supplier and rethrows any exceptions as RuntimeException with custom message.
*
* @param fn Supplier to be executed
* @param msg Message to be set for rethrown exception
* @param <T> Type of returned value
* @param <E> Type of exception thrown
* @return Result of supplier execution
*/
public static <T, E extends Exception> T rethrowAsRuntimeException(
ThrowingSupplier<T, E> fn, String msg) {
try {
return fn.get();
} catch (Exception e) {
throw new RuntimeException(msg, e);
}
}
/**
* Executes given supplier and rethrows any exceptions as RuntimeException with custom message.
*
* @param fn Supplier to be executed
* @param msg Message to be set for rethrown exception
* @param <T> Type of returned value
* @param <E> Type of exception thrown
* @return Result of supplier execution
*/
public static <T, E extends Exception> T rethrowAsRuntimeException(
ThrowingSupplier<T, E> fn, String msg) {
try {
return fn.get();
} catch (Exception e) {
throw new RuntimeException(msg, e);
}
}
}

175
dhp-common/src/main/java/eu/dnetlib/dhp/model/mdstore/MetadataRecord.java
View File

@ -1,120 +1,121 @@
package eu.dnetlib.dhp.model.mdstore;
import eu.dnetlib.dhp.utils.DHPUtils;
import java.io.Serializable;
import eu.dnetlib.dhp.utils.DHPUtils;
/** This class models a record inside the new Metadata store collection on HDFS * */
public class MetadataRecord implements Serializable {
/** The D-Net Identifier associated to the record */
private String id;
/** The D-Net Identifier associated to the record */
private String id;
/** The original Identifier of the record */
private String originalId;
/** The original Identifier of the record */
private String originalId;
/** The encoding of the record, should be JSON or XML */
private String encoding;
/** The encoding of the record, should be JSON or XML */
private String encoding;
/**
* The information about the provenance of the record see @{@link Provenance} for the model of
* this information
*/
private Provenance provenance;
/**
* The information about the provenance of the record see @{@link Provenance} for the model of this information
*/
private Provenance provenance;
/** The content of the metadata */
private String body;
/** The content of the metadata */
private String body;
/** the date when the record has been stored */
private long dateOfCollection;
/** the date when the record has been stored */
private long dateOfCollection;
/** the date when the record has been stored */
private long dateOfTransformation;
/** the date when the record has been stored */
private long dateOfTransformation;
public MetadataRecord() {
this.dateOfCollection = System.currentTimeMillis();
}
public MetadataRecord() {
this.dateOfCollection = System.currentTimeMillis();
}
public MetadataRecord(
String originalId,
String encoding,
Provenance provenance,
String body,
long dateOfCollection) {
public MetadataRecord(
String originalId,
String encoding,
Provenance provenance,
String body,
long dateOfCollection) {
this.originalId = originalId;
this.encoding = encoding;
this.provenance = provenance;
this.body = body;
this.dateOfCollection = dateOfCollection;
this.id = DHPUtils.generateIdentifier(originalId, this.provenance.getNsPrefix());
}
this.originalId = originalId;
this.encoding = encoding;
this.provenance = provenance;
this.body = body;
this.dateOfCollection = dateOfCollection;
this.id = DHPUtils.generateIdentifier(originalId, this.provenance.getNsPrefix());
}
public String getId() {
return id;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public void setId(String id) {
this.id = id;
}
public String getOriginalId() {
return originalId;
}
public String getOriginalId() {
return originalId;
}
public void setOriginalId(String originalId) {
this.originalId = originalId;
}
public void setOriginalId(String originalId) {
this.originalId = originalId;
}
public String getEncoding() {
return encoding;
}
public String getEncoding() {
return encoding;
}
public void setEncoding(String encoding) {
this.encoding = encoding;
}
public void setEncoding(String encoding) {
this.encoding = encoding;
}
public Provenance getProvenance() {
return provenance;
}
public Provenance getProvenance() {
return provenance;
}
public void setProvenance(Provenance provenance) {
this.provenance = provenance;
}
public void setProvenance(Provenance provenance) {
this.provenance = provenance;
}
public String getBody() {
return body;
}
public String getBody() {
return body;
}
public void setBody(String body) {
this.body = body;
}
public void setBody(String body) {
this.body = body;
}
public long getDateOfCollection() {
return dateOfCollection;
}
public long getDateOfCollection() {
return dateOfCollection;
}
public void setDateOfCollection(long dateOfCollection) {
this.dateOfCollection = dateOfCollection;
}
public void setDateOfCollection(long dateOfCollection) {
this.dateOfCollection = dateOfCollection;
}
public long getDateOfTransformation() {
return dateOfTransformation;
}
public long getDateOfTransformation() {
return dateOfTransformation;
}
public void setDateOfTransformation(long dateOfTransformation) {
this.dateOfTransformation = dateOfTransformation;
}
public void setDateOfTransformation(long dateOfTransformation) {
this.dateOfTransformation = dateOfTransformation;
}
@Override
public boolean equals(Object o) {
if (!(o instanceof MetadataRecord)) {
return false;
}
return ((MetadataRecord) o).getId().equalsIgnoreCase(id);
}
@Override
public boolean equals(Object o) {
if (!(o instanceof MetadataRecord)) {
return false;
}
return ((MetadataRecord) o).getId().equalsIgnoreCase(id);
}
@Override
public int hashCode() {
return id.hashCode();
}
@Override
public int hashCode() {
return id.hashCode();
}
}

61
dhp-common/src/main/java/eu/dnetlib/dhp/model/mdstore/Provenance.java
View File

@ -1,49 +1,52 @@
package eu.dnetlib.dhp.model.mdstore;
import java.io.Serializable;
/**
* @author Sandro La Bruzzo
* <p>Provenace class models the provenance of the record in the metadataStore It contains the
* identifier and the name of the datasource that gives the record
* <p>
* Provenace class models the provenance of the record in the metadataStore It contains the identifier and the
* name of the datasource that gives the record
*/
public class Provenance implements Serializable {
private String datasourceId;
private String datasourceId;
private String datasourceName;
private String datasourceName;
private String nsPrefix;
private String nsPrefix;
public Provenance() {}
public Provenance() {
}
public Provenance(String datasourceId, String datasourceName, String nsPrefix) {
this.datasourceId = datasourceId;
this.datasourceName = datasourceName;
this.nsPrefix = nsPrefix;
}
public Provenance(String datasourceId, String datasourceName, String nsPrefix) {
this.datasourceId = datasourceId;
this.datasourceName = datasourceName;
this.nsPrefix = nsPrefix;
}
public String getDatasourceId() {
return datasourceId;
}
public String getDatasourceId() {
return datasourceId;
}
public void setDatasourceId(String datasourceId) {
this.datasourceId = datasourceId;
}
public void setDatasourceId(String datasourceId) {
this.datasourceId = datasourceId;
}
public String getDatasourceName() {
return datasourceName;
}
public String getDatasourceName() {
return datasourceName;
}
public void setDatasourceName(String datasourceName) {
this.datasourceName = datasourceName;
}
public void setDatasourceName(String datasourceName) {
this.datasourceName = datasourceName;
}
public String getNsPrefix() {
return nsPrefix;
}
public String getNsPrefix() {
return nsPrefix;
}
public void setNsPrefix(String nsPrefix) {
this.nsPrefix = nsPrefix;
}
public void setNsPrefix(String nsPrefix) {
this.nsPrefix = nsPrefix;
}
}

13
dhp-common/src/main/java/eu/dnetlib/dhp/parser/utility/VtdException.java
View File

@ -1,12 +1,13 @@
package eu.dnetlib.dhp.parser.utility;
public class VtdException extends Exception {
public VtdException(final Exception e) {
super(e);
}
public VtdException(final Exception e) {
super(e);
}
public VtdException(final Throwable e) {
super(e);
}
public VtdException(final Throwable e) {
super(e);
}
}

170
dhp-common/src/main/java/eu/dnetlib/dhp/parser/utility/VtdUtilityParser.java
View File

@ -1,106 +1,110 @@
package eu.dnetlib.dhp.parser.utility;
import com.ximpleware.AutoPilot;
import com.ximpleware.VTDNav;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import com.ximpleware.AutoPilot;
import com.ximpleware.VTDNav;
/** Created by sandro on 9/29/16. */
public class VtdUtilityParser {
public static List<Node> getTextValuesWithAttributes(
final AutoPilot ap, final VTDNav vn, final String xpath, final List<String> attributes)
throws VtdException {
final List<Node> results = new ArrayList<>();
try {
ap.selectXPath(xpath);
public static List<Node> getTextValuesWithAttributes(
final AutoPilot ap, final VTDNav vn, final String xpath, final List<String> attributes)
throws VtdException {
final List<Node> results = new ArrayList<>();
try {
ap.selectXPath(xpath);
while (ap.evalXPath() != -1) {
final Node currentNode = new Node();
int t = vn.getText();
if (t >= 0) {
currentNode.setTextValue(vn.toNormalizedString(t));
}
currentNode.setAttributes(getAttributes(vn, attributes));
results.add(currentNode);
}
return results;
} catch (Exception e) {
throw new VtdException(e);
}
}
while (ap.evalXPath() != -1) {
final Node currentNode = new Node();
int t = vn.getText();
if (t >= 0) {
currentNode.setTextValue(vn.toNormalizedString(t));
}
currentNode.setAttributes(getAttributes(vn, attributes));
results.add(currentNode);
}
return results;
} catch (Exception e) {
throw new VtdException(e);
}
}
private static Map<String, String> getAttributes(
final VTDNav vn, final List<String> attributes) {
final Map<String, String> currentAttributes = new HashMap<>();
if (attributes != null) {
private static Map<String, String> getAttributes(final VTDNav vn, final List<String> attributes) {
final Map<String, String> currentAttributes = new HashMap<>();
if (attributes != null) {
attributes.forEach(
attributeKey -> {
try {
int attr = vn.getAttrVal(attributeKey);
if (attr > -1) {
currentAttributes.put(attributeKey, vn.toNormalizedString(attr));
}
} catch (Throwable e) {
throw new RuntimeException(e);
}
});
}
return currentAttributes;
}
attributes
.forEach(
attributeKey -> {
try {
int attr = vn.getAttrVal(attributeKey);
if (attr > -1) {
currentAttributes.put(attributeKey, vn.toNormalizedString(attr));
}
} catch (Throwable e) {
throw new RuntimeException(e);
}
});
}
return currentAttributes;
}
public static List<String> getTextValue(final AutoPilot ap, final VTDNav vn, final String xpath)
throws VtdException {
List<String> results = new ArrayList<>();
try {
ap.selectXPath(xpath);
while (ap.evalXPath() != -1) {
int t = vn.getText();
if (t > -1) results.add(vn.toNormalizedString(t));
}
return results;
} catch (Exception e) {
throw new VtdException(e);
}
}
public static List<String> getTextValue(final AutoPilot ap, final VTDNav vn, final String xpath)
throws VtdException {
List<String> results = new ArrayList<>();
try {
ap.selectXPath(xpath);
while (ap.evalXPath() != -1) {
int t = vn.getText();
if (t > -1)
results.add(vn.toNormalizedString(t));
}
return results;
} catch (Exception e) {
throw new VtdException(e);
}
}
public static String getSingleValue(final AutoPilot ap, final VTDNav nav, final String xpath)
throws VtdException {
try {
ap.selectXPath(xpath);
while (ap.evalXPath() != -1) {
int it = nav.getText();
if (it > -1) return nav.toNormalizedString(it);
}
return null;
} catch (Exception e) {
throw new VtdException(e);
}
}
public static String getSingleValue(final AutoPilot ap, final VTDNav nav, final String xpath)
throws VtdException {
try {
ap.selectXPath(xpath);
while (ap.evalXPath() != -1) {
int it = nav.getText();
if (it > -1)
return nav.toNormalizedString(it);
}
return null;
} catch (Exception e) {
throw new VtdException(e);
}
}
public static class Node {
public static class Node {
private String textValue;
private String textValue;
private Map<String, String> attributes;
private Map<String, String> attributes;
public String getTextValue() {
return textValue;
}
public String getTextValue() {
return textValue;
}
public void setTextValue(final String textValue) {
this.textValue = textValue;
}
public void setTextValue(final String textValue) {
this.textValue = textValue;
}
public Map<String, String> getAttributes() {
return attributes;
}
public Map<String, String> getAttributes() {
return attributes;
}
public void setAttributes(final Map<String, String> attributes) {
this.attributes = attributes;
}
}
public void setAttributes(final Map<String, String> attributes) {
this.attributes = attributes;
}
}
}

107
dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
View File

@ -1,70 +1,75 @@
package eu.dnetlib.dhp.utils;
import com.jayway.jsonpath.JsonPath;
import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.nio.charset.StandardCharsets;
import java.security.MessageDigest;
import java.util.zip.GZIPInputStream;
import java.util.zip.GZIPOutputStream;
import net.minidev.json.JSONArray;
import org.apache.commons.codec.binary.Base64;
import org.apache.commons.codec.binary.Base64OutputStream;
import org.apache.commons.codec.binary.Hex;
import com.jayway.jsonpath.JsonPath;
import net.minidev.json.JSONArray;
public class DHPUtils {
public static String md5(final String s) {
try {
final MessageDigest md = MessageDigest.getInstance("MD5");
md.update(s.getBytes("UTF-8"));
return new String(Hex.encodeHex(md.digest()));
} catch (final Exception e) {
System.err.println("Error creating id");
return null;
}
}
public static String md5(final String s) {
try {
final MessageDigest md = MessageDigest.getInstance("MD5");
md.update(s.getBytes(StandardCharsets.UTF_8));
return new String(Hex.encodeHex(md.digest()));
} catch (final Exception e) {
System.err.println("Error creating id");
return null;
}
}
public static String generateIdentifier(final String originalId, final String nsPrefix) {
return String.format("%s::%s", nsPrefix, DHPUtils.md5(originalId));
}
public static String generateIdentifier(final String originalId, final String nsPrefix) {
return String.format("%s::%s", nsPrefix, DHPUtils.md5(originalId));
}
public static String compressString(final String input) {
try (ByteArrayOutputStream out = new ByteArrayOutputStream();
Base64OutputStream b64os = new Base64OutputStream(out)) {
GZIPOutputStream gzip = new GZIPOutputStream(b64os);
gzip.write(input.getBytes(StandardCharsets.UTF_8));
gzip.close();
return out.toString();
} catch (Throwable e) {
return null;
}
}
public static String compressString(final String input) {
try (ByteArrayOutputStream out = new ByteArrayOutputStream();
Base64OutputStream b64os = new Base64OutputStream(out)) {
GZIPOutputStream gzip = new GZIPOutputStream(b64os);
gzip.write(input.getBytes(StandardCharsets.UTF_8));
gzip.close();
return out.toString();
} catch (Throwable e) {
return null;
}
}
public static String decompressString(final String input) {
byte[] byteArray = Base64.decodeBase64(input.getBytes());
int len;
try (GZIPInputStream gis = new GZIPInputStream(new ByteArrayInputStream((byteArray)));
ByteArrayOutputStream bos = new ByteArrayOutputStream(byteArray.length)) {
byte[] buffer = new byte[1024];
while ((len = gis.read(buffer)) != -1) {
bos.write(buffer, 0, len);
}
return bos.toString();
} catch (Exception e) {
return null;
}
}
public static String decompressString(final String input) {
byte[] byteArray = Base64.decodeBase64(input.getBytes());
int len;
try (GZIPInputStream gis = new GZIPInputStream(new ByteArrayInputStream((byteArray)));
ByteArrayOutputStream bos = new ByteArrayOutputStream(byteArray.length)) {
byte[] buffer = new byte[1024];
while ((len = gis.read(buffer)) != -1) {
bos.write(buffer, 0, len);
}
return bos.toString();
} catch (Exception e) {
return null;
}
}
public static String getJPathString(final String jsonPath, final String json) {
try {
Object o = JsonPath.read(json, jsonPath);
if (o instanceof String) return (String) o;
if (o instanceof JSONArray && ((JSONArray) o).size() > 0)
return (String) ((JSONArray) o).get(0);
return o.toString();
} catch (Exception e) {
return "";
}
}
public static String getJPathString(final String jsonPath, final String json) {
try {
Object o = JsonPath.read(json, jsonPath);
if (o instanceof String)
return (String) o;
if (o instanceof JSONArray && ((JSONArray) o).size() > 0)
return (String) ((JSONArray) o).get(0);
return o.toString();
} catch (Exception e) {
return "";
}
}
}

28
dhp-common/src/main/java/eu/dnetlib/dhp/utils/ISLookupClientFactory.java
View File

@ -1,24 +1,26 @@
package eu.dnetlib.dhp.utils;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.apache.cxf.jaxws.JaxWsProxyFactoryBean;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
public class ISLookupClientFactory {
private static final Log log = LogFactory.getLog(ISLookupClientFactory.class);
private static final Log log = LogFactory.getLog(ISLookupClientFactory.class);
public static ISLookUpService getLookUpService(final String isLookupUrl) {
return getServiceStub(ISLookUpService.class, isLookupUrl);
}
public static ISLookUpService getLookUpService(final String isLookupUrl) {
return getServiceStub(ISLookUpService.class, isLookupUrl);
}
@SuppressWarnings("unchecked")
private static <T> T getServiceStub(final Class<T> clazz, final String endpoint) {
log.info(String.format("creating %s stub from %s", clazz.getName(), endpoint));
final JaxWsProxyFactoryBean jaxWsProxyFactory = new JaxWsProxyFactoryBean();
jaxWsProxyFactory.setServiceClass(clazz);
jaxWsProxyFactory.setAddress(endpoint);
return (T) jaxWsProxyFactory.create();
}
@SuppressWarnings("unchecked")
private static <T> T getServiceStub(final Class<T> clazz, final String endpoint) {
log.info(String.format("creating %s stub from %s", clazz.getName(), endpoint));
final JaxWsProxyFactoryBean jaxWsProxyFactory = new JaxWsProxyFactoryBean();
jaxWsProxyFactory.setServiceClass(clazz);
jaxWsProxyFactory.setAddress(endpoint);
return (T) jaxWsProxyFactory.create();
}
}

35
dhp-common/src/main/java/eu/dnetlib/dhp/utils/saxon/AbstractExtensionFunction.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.utils.saxon;
import net.sf.saxon.expr.XPathContext;
@ -9,26 +10,24 @@ import net.sf.saxon.trans.XPathException;
public abstract class AbstractExtensionFunction extends ExtensionFunctionDefinition {
public static String DEFAULT_SAXON_EXT_NS_URI =
"http://www.d-net.research-infrastructures.eu/saxon-extension";
public static String DEFAULT_SAXON_EXT_NS_URI = "http://www.d-net.research-infrastructures.eu/saxon-extension";
public abstract String getName();
public abstract String getName();
public abstract Sequence doCall(XPathContext context, Sequence[] arguments)
throws XPathException;
public abstract Sequence doCall(XPathContext context, Sequence[] arguments) throws XPathException;
@Override
public StructuredQName getFunctionQName() {
return new StructuredQName("dnet", DEFAULT_SAXON_EXT_NS_URI, getName());
}
@Override
public StructuredQName getFunctionQName() {
return new StructuredQName("dnet", DEFAULT_SAXON_EXT_NS_URI, getName());
}
@Override
public ExtensionFunctionCall makeCallExpression() {
return new ExtensionFunctionCall() {
@Override
public Sequence call(XPathContext context, Sequence[] arguments) throws XPathException {
return doCall(context, arguments);
}
};
}
@Override
public ExtensionFunctionCall makeCallExpression() {
return new ExtensionFunctionCall() {
@Override
public Sequence call(XPathContext context, Sequence[] arguments) throws XPathException {
return doCall(context, arguments);
}
};
}
}

94
dhp-common/src/main/java/eu/dnetlib/dhp/utils/saxon/ExtractYear.java
View File

@ -1,9 +1,11 @@
package eu.dnetlib.dhp.utils.saxon;
import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.util.Calendar;
import java.util.GregorianCalendar;
import net.sf.saxon.expr.XPathContext;
import net.sf.saxon.om.Item;
import net.sf.saxon.om.Sequence;
@ -13,55 +15,59 @@ import net.sf.saxon.value.StringValue;
public class ExtractYear extends AbstractExtensionFunction {
private static final String[] dateFormats = {"yyyy-MM-dd", "yyyy/MM/dd"};
private static final String[] dateFormats = {
"yyyy-MM-dd", "yyyy/MM/dd"
};
@Override
public String getName() {
return "extractYear";
}
@Override
public String getName() {
return "extractYear";
}
@Override
public Sequence doCall(XPathContext context, Sequence[] arguments) throws XPathException {
if (arguments == null | arguments.length == 0) {
return new StringValue("");
}
final Item item = arguments[0].head();
if (item == null) {
return new StringValue("");
}
return new StringValue(_year(item.getStringValue()));
}
@Override
public Sequence doCall(XPathContext context, Sequence[] arguments) throws XPathException {
if (arguments == null | arguments.length == 0) {
return new StringValue("");
}
final Item item = arguments[0].head();
if (item == null) {
return new StringValue("");
}
return new StringValue(_year(item.getStringValue()));
}
@Override
public int getMinimumNumberOfArguments() {
return 0;
}
@Override
public int getMinimumNumberOfArguments() {
return 0;
}
@Override
public int getMaximumNumberOfArguments() {
return 1;
}
@Override
public int getMaximumNumberOfArguments() {
return 1;
}
@Override
public SequenceType[] getArgumentTypes() {
return new SequenceType[] {SequenceType.OPTIONAL_ITEM};
}
@Override
public SequenceType[] getArgumentTypes() {
return new SequenceType[] {
SequenceType.OPTIONAL_ITEM
};
}
@Override
public SequenceType getResultType(SequenceType[] suppliedArgumentTypes) {
return SequenceType.SINGLE_STRING;
}
@Override
public SequenceType getResultType(SequenceType[] suppliedArgumentTypes) {
return SequenceType.SINGLE_STRING;
}
private String _year(String s) {
Calendar c = new GregorianCalendar();
for (String format : dateFormats) {
try {
c.setTime(new SimpleDateFormat(format).parse(s));
String year = String.valueOf(c.get(Calendar.YEAR));
return year;
} catch (ParseException e) {
}
}
return "";
}
private String _year(String s) {
Calendar c = new GregorianCalendar();
for (String format : dateFormats) {
try {
c.setTime(new SimpleDateFormat(format).parse(s));
String year = String.valueOf(c.get(Calendar.YEAR));
return year;
} catch (ParseException e) {
}
}
return "";
}
}

92
dhp-common/src/main/java/eu/dnetlib/dhp/utils/saxon/NormalizeDate.java
View File

@ -1,8 +1,10 @@
package eu.dnetlib.dhp.utils.saxon;
import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.util.Date;
import net.sf.saxon.expr.XPathContext;
import net.sf.saxon.om.Sequence;
import net.sf.saxon.trans.XPathException;
@ -11,57 +13,59 @@ import net.sf.saxon.value.StringValue;
public class NormalizeDate extends AbstractExtensionFunction {
private static final String[] normalizeDateFormats = {
"yyyy-MM-dd'T'hh:mm:ss", "yyyy-MM-dd", "yyyy/MM/dd", "yyyy"
};
private static final String[] normalizeDateFormats = {
"yyyy-MM-dd'T'hh:mm:ss", "yyyy-MM-dd", "yyyy/MM/dd", "yyyy"
};
private static final String normalizeOutFormat = new String("yyyy-MM-dd'T'hh:mm:ss'Z'");
private static final String normalizeOutFormat = "yyyy-MM-dd'T'hh:mm:ss'Z'";
@Override
public String getName() {
return "normalizeDate";
}
@Override
public String getName() {
return "normalizeDate";
}
@Override
public Sequence doCall(XPathContext context, Sequence[] arguments) throws XPathException {
if (arguments == null | arguments.length == 0) {
return new StringValue("");
}
String s = arguments[0].head().getStringValue();
return new StringValue(_year(s));
}
@Override
public Sequence doCall(XPathContext context, Sequence[] arguments) throws XPathException {
if (arguments == null | arguments.length == 0) {
return new StringValue("");
}
String s = arguments[0].head().getStringValue();
return new StringValue(_year(s));
}
@Override
public int getMinimumNumberOfArguments() {
return 0;
}
@Override
public int getMinimumNumberOfArguments() {
return 0;
}
@Override
public int getMaximumNumberOfArguments() {
return 1;
}
@Override
public int getMaximumNumberOfArguments() {
return 1;
}
@Override
public SequenceType[] getArgumentTypes() {
return new SequenceType[] {SequenceType.OPTIONAL_ITEM};
}
@Override
public SequenceType[] getArgumentTypes() {
return new SequenceType[] {
SequenceType.OPTIONAL_ITEM
};
}
@Override
public SequenceType getResultType(SequenceType[] suppliedArgumentTypes) {
return SequenceType.SINGLE_STRING;
}
@Override
public SequenceType getResultType(SequenceType[] suppliedArgumentTypes) {
return SequenceType.SINGLE_STRING;
}
private String _year(String s) {
final String date = s != null ? s.trim() : "";
private String _year(String s) {
final String date = s != null ? s.trim() : "";
for (String format : normalizeDateFormats) {
try {
Date parse = new SimpleDateFormat(format).parse(date);
String res = new SimpleDateFormat(normalizeOutFormat).format(parse);
return res;
} catch (ParseException e) {
}
}
return "";
}
for (String format : normalizeDateFormats) {
try {
Date parse = new SimpleDateFormat(format).parse(date);
String res = new SimpleDateFormat(normalizeOutFormat).format(parse);
return res;
} catch (ParseException e) {
}
}
return "";
}
}

83
dhp-common/src/main/java/eu/dnetlib/dhp/utils/saxon/PickFirst.java
View File

@ -1,60 +1,63 @@
package eu.dnetlib.dhp.utils.saxon;
import org.apache.commons.lang3.StringUtils;
import net.sf.saxon.expr.XPathContext;
import net.sf.saxon.om.Item;
import net.sf.saxon.om.Sequence;
import net.sf.saxon.trans.XPathException;
import net.sf.saxon.value.SequenceType;
import net.sf.saxon.value.StringValue;
import org.apache.commons.lang3.StringUtils;
public class PickFirst extends AbstractExtensionFunction {
@Override
public String getName() {
return "pickFirst";
}
@Override
public String getName() {
return "pickFirst";
}
@Override
public Sequence doCall(XPathContext context, Sequence[] arguments) throws XPathException {
if (arguments == null | arguments.length == 0) {
return new StringValue("");
}
@Override
public Sequence doCall(XPathContext context, Sequence[] arguments) throws XPathException {
if (arguments == null | arguments.length == 0) {
return new StringValue("");
}
final String s1 = getValue(arguments[0]);
final String s2 = getValue(arguments[1]);
final String s1 = getValue(arguments[0]);
final String s2 = getValue(arguments[1]);
return new StringValue(
StringUtils.isNotBlank(s1) ? s1 : StringUtils.isNotBlank(s2) ? s2 : "");
}
return new StringValue(StringUtils.isNotBlank(s1) ? s1 : StringUtils.isNotBlank(s2) ? s2 : "");
}
private String getValue(final Sequence arg) throws XPathException {
if (arg != null) {
final Item item = arg.head();
if (item != null) {
return item.getStringValue();
}
}
return "";
}
private String getValue(final Sequence arg) throws XPathException {
if (arg != null) {
final Item item = arg.head();
if (item != null) {
return item.getStringValue();
}
}
return "";
}
@Override
public int getMinimumNumberOfArguments() {
return 0;
}
@Override
public int getMinimumNumberOfArguments() {
return 0;
}
@Override
public int getMaximumNumberOfArguments() {
return 2;
}
@Override
public int getMaximumNumberOfArguments() {
return 2;
}
@Override
public SequenceType[] getArgumentTypes() {
return new SequenceType[] {SequenceType.OPTIONAL_ITEM};
}
@Override
public SequenceType[] getArgumentTypes() {
return new SequenceType[] {
SequenceType.OPTIONAL_ITEM
};
}
@Override
public SequenceType getResultType(SequenceType[] suppliedArgumentTypes) {
return SequenceType.SINGLE_STRING;
}
@Override
public SequenceType getResultType(SequenceType[] suppliedArgumentTypes) {
return SequenceType.SINGLE_STRING;
}
}

33
dhp-common/src/main/java/eu/dnetlib/dhp/utils/saxon/SaxonTransformerFactory.java
View File

@ -1,29 +1,32 @@
package eu.dnetlib.dhp.utils.saxon;
import java.io.StringReader;
import javax.xml.transform.Transformer;
import javax.xml.transform.TransformerException;
import javax.xml.transform.stream.StreamSource;
import net.sf.saxon.Configuration;
import net.sf.saxon.TransformerFactoryImpl;
public class SaxonTransformerFactory {
/**
* Creates the index record transformer from the given XSLT
*
* @param xslt
* @return
* @throws TransformerException
*/
public static Transformer newInstance(final String xslt) throws TransformerException {
/**
* Creates the index record transformer from the given XSLT
*
* @param xslt
* @return
* @throws TransformerException
*/
public static Transformer newInstance(final String xslt) throws TransformerException {
final TransformerFactoryImpl factory = new TransformerFactoryImpl();
final Configuration conf = factory.getConfiguration();
conf.registerExtensionFunction(new ExtractYear());
conf.registerExtensionFunction(new NormalizeDate());
conf.registerExtensionFunction(new PickFirst());
final TransformerFactoryImpl factory = new TransformerFactoryImpl();
final Configuration conf = factory.getConfiguration();
conf.registerExtensionFunction(new ExtractYear());
conf.registerExtensionFunction(new NormalizeDate());
conf.registerExtensionFunction(new PickFirst());
return factory.newTransformer(new StreamSource(new StringReader(xslt)));
}
return factory.newTransformer(new StreamSource(new StringReader(xslt)));
}
}

103
dhp-common/src/main/java/eu/dnetlib/message/Message.java
View File

@ -1,73 +1,76 @@
package eu.dnetlib.message;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import java.io.IOException;
import java.util.Map;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
public class Message {
private String workflowId;
private String workflowId;
private String jobName;
private String jobName;
private MessageType type;
private MessageType type;
private Map<String, String> body;
private Map<String, String> body;
public static Message fromJson(final String json) throws IOException {
final ObjectMapper jsonMapper = new ObjectMapper();
return jsonMapper.readValue(json, Message.class);
}
public static Message fromJson(final String json) throws IOException {
final ObjectMapper jsonMapper = new ObjectMapper();
return jsonMapper.readValue(json, Message.class);
}
public Message() {}
public Message() {
}
public Message(String workflowId, String jobName, MessageType type, Map<String, String> body) {
this.workflowId = workflowId;
this.jobName = jobName;
this.type = type;
this.body = body;
}
public Message(String workflowId, String jobName, MessageType type, Map<String, String> body) {
this.workflowId = workflowId;
this.jobName = jobName;
this.type = type;
this.body = body;
}
public String getWorkflowId() {
return workflowId;
}
public String getWorkflowId() {
return workflowId;
}
public void setWorkflowId(String workflowId) {
this.workflowId = workflowId;
}
public void setWorkflowId(String workflowId) {
this.workflowId = workflowId;
}
public String getJobName() {
return jobName;
}
public String getJobName() {
return jobName;
}
public void setJobName(String jobName) {
this.jobName = jobName;
}
public void setJobName(String jobName) {
this.jobName = jobName;
}
public MessageType getType() {
return type;
}
public MessageType getType() {
return type;
}
public void setType(MessageType type) {
this.type = type;
}
public void setType(MessageType type) {
this.type = type;
}
public Map<String, String> getBody() {
return body;
}
public Map<String, String> getBody() {
return body;
}
public void setBody(Map<String, String> body) {
this.body = body;
}
public void setBody(Map<String, String> body) {
this.body = body;
}
@Override
public String toString() {
final ObjectMapper jsonMapper = new ObjectMapper();
try {
return jsonMapper.writeValueAsString(this);
} catch (JsonProcessingException e) {
return null;
}
}
@Override
public String toString() {
final ObjectMapper jsonMapper = new ObjectMapper();
try {
return jsonMapper.writeValueAsString(this);
} catch (JsonProcessingException e) {
return null;
}
}
}

68
dhp-common/src/main/java/eu/dnetlib/message/MessageConsumer.java
View File

@ -1,45 +1,47 @@
package eu.dnetlib.message;
import java.io.IOException;
import java.nio.charset.StandardCharsets;
import java.util.concurrent.LinkedBlockingQueue;
import com.rabbitmq.client.AMQP;
import com.rabbitmq.client.Channel;
import com.rabbitmq.client.DefaultConsumer;
import com.rabbitmq.client.Envelope;
import java.io.IOException;
import java.nio.charset.StandardCharsets;
import java.util.concurrent.LinkedBlockingQueue;
public class MessageConsumer extends DefaultConsumer {
final LinkedBlockingQueue<Message> queueMessages;
final LinkedBlockingQueue<Message> queueMessages;
/**
* Constructs a new instance and records its association to the passed-in channel.
*
* @param channel the channel to which this consumer is attached
* @param queueMessages
*/
public MessageConsumer(Channel channel, LinkedBlockingQueue<Message> queueMessages) {
super(channel);
this.queueMessages = queueMessages;
}
/**
* Constructs a new instance and records its association to the passed-in channel.
*
* @param channel the channel to which this consumer is attached
* @param queueMessages
*/
public MessageConsumer(Channel channel, LinkedBlockingQueue<Message> queueMessages) {
super(channel);
this.queueMessages = queueMessages;
}
@Override
public void handleDelivery(
String consumerTag, Envelope envelope, AMQP.BasicProperties properties, byte[] body)
throws IOException {
final String json = new String(body, StandardCharsets.UTF_8);
Message message = Message.fromJson(json);
try {
this.queueMessages.put(message);
System.out.println("Receiving Message " + message);
} catch (InterruptedException e) {
if (message.getType() == MessageType.REPORT)
throw new RuntimeException("Error on sending message");
else {
// TODO LOGGING EXCEPTION
}
} finally {
getChannel().basicAck(envelope.getDeliveryTag(), false);
}
}
@Override
public void handleDelivery(
String consumerTag, Envelope envelope, AMQP.BasicProperties properties, byte[] body)
throws IOException {
final String json = new String(body, StandardCharsets.UTF_8);
Message message = Message.fromJson(json);
try {
this.queueMessages.put(message);
System.out.println("Receiving Message " + message);
} catch (InterruptedException e) {
if (message.getType() == MessageType.REPORT)
throw new RuntimeException("Error on sending message");
else {
// TODO LOGGING EXCEPTION
}
} finally {
getChannel().basicAck(envelope.getDeliveryTag(), false);
}
}
}

208
dhp-common/src/main/java/eu/dnetlib/message/MessageManager.java
View File

@ -1,134 +1,136 @@
package eu.dnetlib.message;
import com.rabbitmq.client.Channel;
import com.rabbitmq.client.Connection;
import com.rabbitmq.client.ConnectionFactory;
import java.io.IOException;
import java.util.HashMap;
import java.util.Map;
import java.util.concurrent.LinkedBlockingQueue;
import java.util.concurrent.TimeoutException;
import com.rabbitmq.client.Channel;
import com.rabbitmq.client.Connection;
import com.rabbitmq.client.ConnectionFactory;
public class MessageManager {
private final String messageHost;
private final String messageHost;
private final String username;
private final String username;
private final String password;
private final String password;
private Connection connection;
private Connection connection;
private Map<String, Channel> channels = new HashMap<>();
private final Map<String, Channel> channels = new HashMap<>();
private boolean durable;
private boolean durable;
private boolean autodelete;
private boolean autodelete;
private final LinkedBlockingQueue<Message> queueMessages;
private final LinkedBlockingQueue<Message> queueMessages;
public MessageManager(
String messageHost,
String username,
String password,
final LinkedBlockingQueue<Message> queueMessages) {
this.queueMessages = queueMessages;
this.messageHost = messageHost;
this.username = username;
this.password = password;
}
public MessageManager(
String messageHost,
String username,
String password,
final LinkedBlockingQueue<Message> queueMessages) {
this.queueMessages = queueMessages;
this.messageHost = messageHost;
this.username = username;
this.password = password;
}
public MessageManager(
String messageHost,
String username,
String password,
boolean durable,
boolean autodelete,
final LinkedBlockingQueue<Message> queueMessages) {
this.queueMessages = queueMessages;
this.messageHost = messageHost;
this.username = username;
this.password = password;
public MessageManager(
String messageHost,
String username,
String password,
boolean durable,
boolean autodelete,
final LinkedBlockingQueue<Message> queueMessages) {
this.queueMessages = queueMessages;
this.messageHost = messageHost;
this.username = username;
this.password = password;
this.durable = durable;
this.autodelete = autodelete;
}
this.durable = durable;
this.autodelete = autodelete;
}
private Connection createConnection() throws IOException, TimeoutException {
ConnectionFactory factory = new ConnectionFactory();
factory.setHost(this.messageHost);
factory.setUsername(this.username);
factory.setPassword(this.password);
return factory.newConnection();
}
private Connection createConnection() throws IOException, TimeoutException {
ConnectionFactory factory = new ConnectionFactory();
factory.setHost(this.messageHost);
factory.setUsername(this.username);
factory.setPassword(this.password);
return factory.newConnection();
}
private Channel createChannel(
final Connection connection,
final String queueName,
final boolean durable,
final boolean autodelete)
throws Exception {
Map<String, Object> args = new HashMap<>();
args.put("x-message-ttl", 10000);
Channel channel = connection.createChannel();
channel.queueDeclare(queueName, durable, false, this.autodelete, args);
return channel;
}
private Channel createChannel(
final Connection connection,
final String queueName,
final boolean durable,
final boolean autodelete)
throws Exception {
Map<String, Object> args = new HashMap<>();
args.put("x-message-ttl", 10000);
Channel channel = connection.createChannel();
channel.queueDeclare(queueName, durable, false, this.autodelete, args);
return channel;
}
private Channel getOrCreateChannel(final String queueName, boolean durable, boolean autodelete)
throws Exception {
if (channels.containsKey(queueName)) {
return channels.get(queueName);
}
private Channel getOrCreateChannel(final String queueName, boolean durable, boolean autodelete)
throws Exception {
if (channels.containsKey(queueName)) {
return channels.get(queueName);
}
if (this.connection == null) {
this.connection = createConnection();
}
channels.put(queueName, createChannel(this.connection, queueName, durable, autodelete));
return channels.get(queueName);
}
if (this.connection == null) {
this.connection = createConnection();
}
channels.put(queueName, createChannel(this.connection, queueName, durable, autodelete));
return channels.get(queueName);
}
public void close() throws IOException {
channels.values()
.forEach(
ch -> {
try {
ch.close();
} catch (Exception e) {
// TODO LOG
}
});
public void close() throws IOException {
channels
.values()
.forEach(
ch -> {
try {
ch.close();
} catch (Exception e) {
// TODO LOG
}
});
this.connection.close();
}
this.connection.close();
}
public boolean sendMessage(final Message message, String queueName) throws Exception {
try {
Channel channel = getOrCreateChannel(queueName, this.durable, this.autodelete);
channel.basicPublish("", queueName, null, message.toString().getBytes());
return true;
} catch (Throwable e) {
throw new RuntimeException(e);
}
}
public boolean sendMessage(final Message message, String queueName) throws Exception {
try {
Channel channel = getOrCreateChannel(queueName, this.durable, this.autodelete);
channel.basicPublish("", queueName, null, message.toString().getBytes());
return true;
} catch (Throwable e) {
throw new RuntimeException(e);
}
}
public boolean sendMessage(
final Message message, String queueName, boolean durable_var, boolean autodelete_var)
throws Exception {
try {
Channel channel = getOrCreateChannel(queueName, durable_var, autodelete_var);
channel.basicPublish("", queueName, null, message.toString().getBytes());
return true;
} catch (Throwable e) {
throw new RuntimeException(e);
}
}
public boolean sendMessage(
final Message message, String queueName, boolean durable_var, boolean autodelete_var)
throws Exception {
try {
Channel channel = getOrCreateChannel(queueName, durable_var, autodelete_var);
channel.basicPublish("", queueName, null, message.toString().getBytes());
return true;
} catch (Throwable e) {
throw new RuntimeException(e);
}
}
public void startConsumingMessage(
final String queueName, final boolean durable, final boolean autodelete)
throws Exception {
public void startConsumingMessage(
final String queueName, final boolean durable, final boolean autodelete) throws Exception {
Channel channel = createChannel(createConnection(), queueName, durable, autodelete);
channel.basicConsume(queueName, false, new MessageConsumer(channel, queueMessages));
}
Channel channel = createChannel(createConnection(), queueName, durable, autodelete);
channel.basicConsume(queueName, false, new MessageConsumer(channel, queueMessages));
}
}

4
dhp-common/src/main/java/eu/dnetlib/message/MessageType.java
View File

@ -1,6 +1,6 @@
package eu.dnetlib.message;
public enum MessageType {
ONGOING,
REPORT
ONGOING, REPORT
}

29
dhp-common/src/main/java/eu/dnetlib/scholexplorer/relation/RelInfo.java
View File

@ -1,24 +1,25 @@
package eu.dnetlib.scholexplorer.relation;
import java.io.Serializable;
public class RelInfo implements Serializable {
private String original;
private String inverse;
private String original;
private String inverse;
public String getOriginal() {
return original;
}
public String getOriginal() {
return original;
}
public void setOriginal(String original) {
this.original = original;
}
public void setOriginal(String original) {
this.original = original;
}
public String getInverse() {
return inverse;
}
public String getInverse() {
return inverse;
}
public void setInverse(String inverse) {
this.inverse = inverse;
}
public void setInverse(String inverse) {
this.inverse = inverse;
}
}

16
dhp-common/src/main/java/eu/dnetlib/scholexplorer/relation/RelationMapper.java
View File

@ -1,18 +1,20 @@
package eu.dnetlib.scholexplorer.relation;
import com.fasterxml.jackson.databind.ObjectMapper;
import java.io.Serializable;
import java.util.HashMap;
import org.apache.commons.io.IOUtils;
import com.fasterxml.jackson.databind.ObjectMapper;
public class RelationMapper extends HashMap<String, RelInfo> implements Serializable {
public static RelationMapper load() throws Exception {
public static RelationMapper load() throws Exception {
final String json =
IOUtils.toString(RelationMapper.class.getResourceAsStream("relations.json"));
final String json = IOUtils.toString(RelationMapper.class.getResourceAsStream("relations.json"));
ObjectMapper mapper = new ObjectMapper();
return mapper.readValue(json, RelationMapper.class);
}
ObjectMapper mapper = new ObjectMapper();
return mapper.readValue(json, RelationMapper.class);
}
}

111
dhp-common/src/test/java/eu/dnetlib/dhp/application/ArgumentApplicationParserTest.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.application;
import static org.junit.jupiter.api.Assertions.assertEquals;
@ -8,59 +9,59 @@ import org.junit.jupiter.api.Test;
public class ArgumentApplicationParserTest {
@Test
public void testParseParameter() throws Exception {
final String jsonConfiguration =
IOUtils.toString(
this.getClass()
.getResourceAsStream("/eu/dnetlib/application/parameters.json"));
assertNotNull(jsonConfiguration);
ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
parser.parseArgument(
new String[] {
"-p",
"value0",
"-a",
"value1",
"-n",
"value2",
"-u",
"value3",
"-ru",
"value4",
"-rp",
"value5",
"-rh",
"value6",
"-ro",
"value7",
"-rr",
"value8",
"-w",
"value9",
"-cc",
ArgumentApplicationParser.compressArgument(jsonConfiguration)
});
assertNotNull(parser.get("hdfsPath"));
assertNotNull(parser.get("apidescriptor"));
assertNotNull(parser.get("namenode"));
assertNotNull(parser.get("userHDFS"));
assertNotNull(parser.get("rabbitUser"));
assertNotNull(parser.get("rabbitPassWord"));
assertNotNull(parser.get("rabbitHost"));
assertNotNull(parser.get("rabbitOngoingQueue"));
assertNotNull(parser.get("rabbitReportQueue"));
assertNotNull(parser.get("workflowId"));
assertEquals("value0", parser.get("hdfsPath"));
assertEquals("value1", parser.get("apidescriptor"));
assertEquals("value2", parser.get("namenode"));
assertEquals("value3", parser.get("userHDFS"));
assertEquals("value4", parser.get("rabbitUser"));
assertEquals("value5", parser.get("rabbitPassWord"));
assertEquals("value6", parser.get("rabbitHost"));
assertEquals("value7", parser.get("rabbitOngoingQueue"));
assertEquals("value8", parser.get("rabbitReportQueue"));
assertEquals("value9", parser.get("workflowId"));
assertEquals(jsonConfiguration, parser.get("ccCoco"));
}
@Test
public void testParseParameter() throws Exception {
final String jsonConfiguration = IOUtils
.toString(
this.getClass().getResourceAsStream("/eu/dnetlib/application/parameters.json"));
assertNotNull(jsonConfiguration);
ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
parser
.parseArgument(
new String[] {
"-p",
"value0",
"-a",
"value1",
"-n",
"value2",
"-u",
"value3",
"-ru",
"value4",
"-rp",
"value5",
"-rh",
"value6",
"-ro",
"value7",
"-rr",
"value8",
"-w",
"value9",
"-cc",
ArgumentApplicationParser.compressArgument(jsonConfiguration)
});
assertNotNull(parser.get("hdfsPath"));
assertNotNull(parser.get("apidescriptor"));
assertNotNull(parser.get("namenode"));
assertNotNull(parser.get("userHDFS"));
assertNotNull(parser.get("rabbitUser"));
assertNotNull(parser.get("rabbitPassWord"));
assertNotNull(parser.get("rabbitHost"));
assertNotNull(parser.get("rabbitOngoingQueue"));
assertNotNull(parser.get("rabbitReportQueue"));
assertNotNull(parser.get("workflowId"));
assertEquals("value0", parser.get("hdfsPath"));
assertEquals("value1", parser.get("apidescriptor"));
assertEquals("value2", parser.get("namenode"));
assertEquals("value3", parser.get("userHDFS"));
assertEquals("value4", parser.get("rabbitUser"));
assertEquals("value5", parser.get("rabbitPassWord"));
assertEquals("value6", parser.get("rabbitHost"));
assertEquals("value7", parser.get("rabbitOngoingQueue"));
assertEquals("value8", parser.get("rabbitReportQueue"));
assertEquals("value9", parser.get("workflowId"));
assertEquals(jsonConfiguration, parser.get("ccCoco"));
}
}

101
dhp-common/src/test/java/eu/dnetlib/dhp/common/HdfsSupportTest.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.common;
import static org.junit.jupiter.api.Assertions.*;
@ -8,6 +9,7 @@ import java.nio.file.Path;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import org.apache.hadoop.conf.Configuration;
import org.junit.jupiter.api.Nested;
import org.junit.jupiter.api.Test;
@ -15,65 +17,64 @@ import org.junit.jupiter.api.io.TempDir;
public class HdfsSupportTest {
@Nested
class Remove {
@Nested
class Remove {
@Test
public void shouldThrowARuntimeExceptionOnError() {
// when
assertThrows(
RuntimeException.class, () -> HdfsSupport.remove(null, new Configuration()));
}
@Test
public void shouldThrowARuntimeExceptionOnError() {
// when
assertThrows(RuntimeException.class, () -> HdfsSupport.remove(null, new Configuration()));
}
@Test
public void shouldRemoveADirFromHDFS(@TempDir Path tempDir) {
// when
HdfsSupport.remove(tempDir.toString(), new Configuration());
@Test
public void shouldRemoveADirFromHDFS(@TempDir Path tempDir) {
// when
HdfsSupport.remove(tempDir.toString(), new Configuration());
// then
assertFalse(Files.exists(tempDir));
}
// then
assertFalse(Files.exists(tempDir));
}
@Test
public void shouldRemoveAFileFromHDFS(@TempDir Path tempDir) throws IOException {
// given
Path file = Files.createTempFile(tempDir, "p", "s");
@Test
public void shouldRemoveAFileFromHDFS(@TempDir Path tempDir) throws IOException {
// given
Path file = Files.createTempFile(tempDir, "p", "s");
// when
HdfsSupport.remove(file.toString(), new Configuration());
// when
HdfsSupport.remove(file.toString(), new Configuration());
// then
assertFalse(Files.exists(file));
}
}
// then
assertFalse(Files.exists(file));
}
}
@Nested
class ListFiles {
@Nested
class ListFiles {
@Test
public void shouldThrowARuntimeExceptionOnError() {
// when
assertThrows(
RuntimeException.class, () -> HdfsSupport.listFiles(null, new Configuration()));
}
@Test
public void shouldThrowARuntimeExceptionOnError() {
// when
assertThrows(RuntimeException.class, () -> HdfsSupport.listFiles(null, new Configuration()));
}
@Test
public void shouldListFilesLocatedInPath(@TempDir Path tempDir) throws IOException {
Path subDir1 = Files.createTempDirectory(tempDir, "list_me");
Path subDir2 = Files.createTempDirectory(tempDir, "list_me");
@Test
public void shouldListFilesLocatedInPath(@TempDir Path tempDir) throws IOException {
Path subDir1 = Files.createTempDirectory(tempDir, "list_me");
Path subDir2 = Files.createTempDirectory(tempDir, "list_me");
// when
List<String> paths = HdfsSupport.listFiles(tempDir.toString(), new Configuration());
// when
List<String> paths = HdfsSupport.listFiles(tempDir.toString(), new Configuration());
// then
assertEquals(2, paths.size());
List<String> expecteds =
Arrays.stream(new String[] {subDir1.toString(), subDir2.toString()})
.sorted()
.collect(Collectors.toList());
List<String> actuals = paths.stream().sorted().collect(Collectors.toList());
assertTrue(actuals.get(0).contains(expecteds.get(0)));
assertTrue(actuals.get(1).contains(expecteds.get(1)));
}
}
// then
assertEquals(2, paths.size());
List<String> expecteds = Arrays.stream(new String[] {
subDir1.toString(), subDir2.toString()
})
.sorted()
.collect(Collectors.toList());
List<String> actuals = paths.stream().sorted().collect(Collectors.toList());
assertTrue(actuals.get(0).contains(expecteds.get(0)));
assertTrue(actuals.get(1).contains(expecteds.get(1)));
}
}
}

75
dhp-common/src/test/java/eu/dnetlib/dhp/common/SparkSessionSupportTest.java
View File

@ -1,55 +1,58 @@
package eu.dnetlib.dhp.common;
import static org.mockito.Mockito.*;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.ThrowingConsumer;
import java.util.function.Function;
import org.apache.spark.SparkConf;
import org.apache.spark.sql.SparkSession;
import org.junit.jupiter.api.Nested;
import org.junit.jupiter.api.Test;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.ThrowingConsumer;
public class SparkSessionSupportTest {
@Nested
class RunWithSparkSession {
@Nested
class RunWithSparkSession {
@Test
public void shouldExecuteFunctionAndNotStopSparkSessionWhenSparkSessionIsNotManaged()
throws Exception {
// given
SparkSession spark = mock(SparkSession.class);
SparkConf conf = mock(SparkConf.class);
Function<SparkConf, SparkSession> sparkSessionBuilder = mock(Function.class);
when(sparkSessionBuilder.apply(conf)).thenReturn(spark);
ThrowingConsumer<SparkSession, Exception> fn = mock(ThrowingConsumer.class);
@Test
public void shouldExecuteFunctionAndNotStopSparkSessionWhenSparkSessionIsNotManaged()
throws Exception {
// given
SparkSession spark = mock(SparkSession.class);
SparkConf conf = mock(SparkConf.class);
Function<SparkConf, SparkSession> sparkSessionBuilder = mock(Function.class);
when(sparkSessionBuilder.apply(conf)).thenReturn(spark);
ThrowingConsumer<SparkSession, Exception> fn = mock(ThrowingConsumer.class);
// when
SparkSessionSupport.runWithSparkSession(sparkSessionBuilder, conf, false, fn);
// when
SparkSessionSupport.runWithSparkSession(sparkSessionBuilder, conf, false, fn);
// then
verify(sparkSessionBuilder).apply(conf);
verify(fn).accept(spark);
verify(spark, never()).stop();
}
// then
verify(sparkSessionBuilder).apply(conf);
verify(fn).accept(spark);
verify(spark, never()).stop();
}
@Test
public void shouldExecuteFunctionAndStopSparkSessionWhenSparkSessionIsManaged()
throws Exception {
// given
SparkSession spark = mock(SparkSession.class);
SparkConf conf = mock(SparkConf.class);
Function<SparkConf, SparkSession> sparkSessionBuilder = mock(Function.class);
when(sparkSessionBuilder.apply(conf)).thenReturn(spark);
ThrowingConsumer<SparkSession, Exception> fn = mock(ThrowingConsumer.class);
@Test
public void shouldExecuteFunctionAndStopSparkSessionWhenSparkSessionIsManaged()
throws Exception {
// given
SparkSession spark = mock(SparkSession.class);
SparkConf conf = mock(SparkConf.class);
Function<SparkConf, SparkSession> sparkSessionBuilder = mock(Function.class);
when(sparkSessionBuilder.apply(conf)).thenReturn(spark);
ThrowingConsumer<SparkSession, Exception> fn = mock(ThrowingConsumer.class);
// when
SparkSessionSupport.runWithSparkSession(sparkSessionBuilder, conf, true, fn);
// when
SparkSessionSupport.runWithSparkSession(sparkSessionBuilder, conf, true, fn);
// then
verify(sparkSessionBuilder).apply(conf);
verify(fn).accept(spark);
verify(spark, times(1)).stop();
}
}
// then
verify(sparkSessionBuilder).apply(conf);
verify(fn).accept(spark);
verify(spark, times(1)).stop();
}
}
}

11
dhp-common/src/test/java/eu/dnetlib/dhp/model/mdstore/MetadataRecordTest.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.model.mdstore;
import static org.junit.jupiter.api.Assertions.assertTrue;
@ -6,10 +7,10 @@ import org.junit.jupiter.api.Test;
public class MetadataRecordTest {
@Test
public void getTimestamp() {
@Test
public void getTimestamp() {
MetadataRecord r = new MetadataRecord();
assertTrue(r.getDateOfCollection() > 0);
}
MetadataRecord r = new MetadataRecord();
assertTrue(r.getDateOfCollection() > 0);
}
}

69
dhp-common/src/test/java/eu/dnetlib/message/MessageTest.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.message;
import static org.junit.jupiter.api.Assertions.*;
@ -5,48 +6,46 @@ import static org.junit.jupiter.api.Assertions.*;
import java.io.IOException;
import java.util.HashMap;
import java.util.Map;
import org.junit.jupiter.api.Test;
public class MessageTest {
@Test
public void fromJsonTest() throws IOException {
Message m = new Message();
m.setWorkflowId("wId");
m.setType(MessageType.ONGOING);
m.setJobName("Collection");
Map<String, String> body = new HashMap<>();
body.put("parsedItem", "300");
body.put("ExecutionTime", "30s");
@Test
public void fromJsonTest() throws IOException {
Message m = new Message();
m.setWorkflowId("wId");
m.setType(MessageType.ONGOING);
m.setJobName("Collection");
Map<String, String> body = new HashMap<>();
body.put("parsedItem", "300");
body.put("ExecutionTime", "30s");
m.setBody(body);
System.out.println("m = " + m);
Message m1 = Message.fromJson(m.toString());
assertEquals(m1.getWorkflowId(), m.getWorkflowId());
assertEquals(m1.getType(), m.getType());
assertEquals(m1.getJobName(), m.getJobName());
m.setBody(body);
System.out.println("m = " + m);
Message m1 = Message.fromJson(m.toString());
assertEquals(m1.getWorkflowId(), m.getWorkflowId());
assertEquals(m1.getType(), m.getType());
assertEquals(m1.getJobName(), m.getJobName());
assertNotNull(m1.getBody());
m1.getBody()
.keySet()
.forEach(it -> assertEquals(m1.getBody().get(it), m.getBody().get(it)));
assertEquals(m1.getJobName(), m.getJobName());
}
assertNotNull(m1.getBody());
m1.getBody().keySet().forEach(it -> assertEquals(m1.getBody().get(it), m.getBody().get(it)));
assertEquals(m1.getJobName(), m.getJobName());
}
@Test
public void toStringTest() {
final String expectedJson =
"{\"workflowId\":\"wId\",\"jobName\":\"Collection\",\"type\":\"ONGOING\",\"body\":{\"ExecutionTime\":\"30s\",\"parsedItem\":\"300\"}}";
Message m = new Message();
m.setWorkflowId("wId");
m.setType(MessageType.ONGOING);
m.setJobName("Collection");
Map<String, String> body = new HashMap<>();
body.put("parsedItem", "300");
body.put("ExecutionTime", "30s");
@Test
public void toStringTest() {
final String expectedJson = "{\"workflowId\":\"wId\",\"jobName\":\"Collection\",\"type\":\"ONGOING\",\"body\":{\"ExecutionTime\":\"30s\",\"parsedItem\":\"300\"}}";
Message m = new Message();
m.setWorkflowId("wId");
m.setType(MessageType.ONGOING);
m.setJobName("Collection");
Map<String, String> body = new HashMap<>();
body.put("parsedItem", "300");
body.put("ExecutionTime", "30s");
m.setBody(body);
m.setBody(body);
assertEquals(expectedJson, m.toString());
}
assertEquals(expectedJson, m.toString());
}
}

11
dhp-common/src/test/java/eu/dnetlib/scholexplorer/relation/RelationMapperTest.java
View File

@ -1,13 +1,14 @@
package eu.dnetlib.scholexplorer.relation;
import org.junit.jupiter.api.Test;
public class RelationMapperTest {
@Test
public void testLoadRels() throws Exception {
@Test
public void testLoadRels() throws Exception {
RelationMapper relationMapper = RelationMapper.load();
relationMapper.keySet().forEach(System.out::println);
}
RelationMapper relationMapper = RelationMapper.load();
relationMapper.keySet().forEach(System.out::println);
}
}

2
dhp-schemas/pom.xml
View File

@ -12,7 +12,7 @@
<artifactId>dhp-schemas</artifactId>
<packaging>jar</packaging>
<description>This module contains common schema classes meant to be used across the dnet-hadoop submodules</description>
<dependencies>

46
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/action/AtomicAction.java
View File

@ -1,36 +1,40 @@
package eu.dnetlib.dhp.schema.action;
import com.fasterxml.jackson.databind.annotation.JsonDeserialize;
import eu.dnetlib.dhp.schema.oaf.Oaf;
import java.io.Serializable;
import com.fasterxml.jackson.databind.annotation.JsonDeserialize;
import eu.dnetlib.dhp.schema.oaf.Oaf;
@JsonDeserialize(using = AtomicActionDeserializer.class)
public class AtomicAction<T extends Oaf> implements Serializable {
private Class<T> clazz;
private Class<T> clazz;
private T payload;
private T payload;
public AtomicAction() {}
public AtomicAction() {
}
public AtomicAction(Class<T> clazz, T payload) {
this.clazz = clazz;
this.payload = payload;
}
public AtomicAction(Class<T> clazz, T payload) {
this.clazz = clazz;
this.payload = payload;
}
public Class<T> getClazz() {
return clazz;
}
public Class<T> getClazz() {
return clazz;
}
public void setClazz(Class<T> clazz) {
this.clazz = clazz;
}
public void setClazz(Class<T> clazz) {
this.clazz = clazz;
}
public T getPayload() {
return payload;
}
public T getPayload() {
return payload;
}
public void setPayload(T payload) {
this.payload = payload;
}
public void setPayload(T payload) {
this.payload = payload;
}
}

33
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/action/AtomicActionDeserializer.java
View File

@ -1,29 +1,32 @@
package eu.dnetlib.dhp.schema.action;
import java.io.IOException;
import com.fasterxml.jackson.core.JsonParser;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.DeserializationContext;
import com.fasterxml.jackson.databind.JsonDeserializer;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Oaf;
import java.io.IOException;
public class AtomicActionDeserializer extends JsonDeserializer {
@Override
public Object deserialize(JsonParser jp, DeserializationContext ctxt)
throws IOException, JsonProcessingException {
JsonNode node = jp.getCodec().readTree(jp);
String classTag = node.get("clazz").asText();
JsonNode payload = node.get("payload");
ObjectMapper mapper = new ObjectMapper();
@Override
public Object deserialize(JsonParser jp, DeserializationContext ctxt)
throws IOException {
JsonNode node = jp.getCodec().readTree(jp);
String classTag = node.get("clazz").asText();
JsonNode payload = node.get("payload");
ObjectMapper mapper = new ObjectMapper();
try {
final Class<?> clazz = Class.forName(classTag);
return new AtomicAction(clazz, (Oaf) mapper.readValue(payload.toString(), clazz));
} catch (ClassNotFoundException e) {
throw new IOException(e);
}
}
try {
final Class<?> clazz = Class.forName(classTag);
return new AtomicAction(clazz, (Oaf) mapper.readValue(payload.toString(), clazz));
} catch (ClassNotFoundException e) {
throw new IOException(e);
}
}
}

29
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/EntityType.java
View File

@ -1,26 +1,21 @@
package eu.dnetlib.dhp.schema.common;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
/** Actual entity types in the Graph */
public enum EntityType {
publication,
dataset,
otherresearchproduct,
software,
datasource,
organization,
project;
publication, dataset, otherresearchproduct, software, datasource, organization, project;
/**
* Resolves the EntityType, given the relative class name
*
* @param clazz the given class name
* @param <T> actual OafEntity subclass
* @return the EntityType associated to the given class
*/
public static <T extends OafEntity> EntityType fromClass(Class<T> clazz) {
/**
* Resolves the EntityType, given the relative class name
*
* @param clazz the given class name
* @param <T> actual OafEntity subclass
* @return the EntityType associated to the given class
*/
public static <T extends OafEntity> EntityType fromClass(Class<T> clazz) {
return EntityType.valueOf(clazz.getSimpleName().toLowerCase());
}
return EntityType.valueOf(clazz.getSimpleName().toLowerCase());
}
}

6
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/MainEntityType.java
View File

@ -1,9 +1,7 @@
package eu.dnetlib.dhp.schema.common;
/** Main entity types in the Graph */
public enum MainEntityType {
result,
datasource,
organization,
project
result, datasource, organization, project
}

41
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/ModelConstants.java Normal file
View File

@ -0,0 +1,41 @@
package eu.dnetlib.dhp.schema.common;
import eu.dnetlib.dhp.schema.oaf.Qualifier;
public class ModelConstants {
public static final String DNET_RESULT_TYPOLOGIES = "dnet:result_typologies";
public static final String DATASET_RESULTTYPE_CLASSID = "dataset";
public static final String PUBLICATION_RESULTTYPE_CLASSID = "publication";
public static final String SOFTWARE_RESULTTYPE_CLASSID = "software";
public static final String ORP_RESULTTYPE_CLASSID = "other";
public static Qualifier PUBLICATION_DEFAULT_RESULTTYPE = new Qualifier();
public static Qualifier DATASET_DEFAULT_RESULTTYPE = new Qualifier();
public static Qualifier SOFTWARE_DEFAULT_RESULTTYPE = new Qualifier();
public static Qualifier ORP_DEFAULT_RESULTTYPE = new Qualifier();
static {
PUBLICATION_DEFAULT_RESULTTYPE.setClassid(PUBLICATION_RESULTTYPE_CLASSID);
PUBLICATION_DEFAULT_RESULTTYPE.setClassname(PUBLICATION_RESULTTYPE_CLASSID);
PUBLICATION_DEFAULT_RESULTTYPE.setSchemeid(DNET_RESULT_TYPOLOGIES);
PUBLICATION_DEFAULT_RESULTTYPE.setSchemename(DNET_RESULT_TYPOLOGIES);
DATASET_DEFAULT_RESULTTYPE.setClassid(DATASET_RESULTTYPE_CLASSID);
DATASET_DEFAULT_RESULTTYPE.setClassname(DATASET_RESULTTYPE_CLASSID);
DATASET_DEFAULT_RESULTTYPE.setSchemeid(DNET_RESULT_TYPOLOGIES);
DATASET_DEFAULT_RESULTTYPE.setSchemename(DNET_RESULT_TYPOLOGIES);
SOFTWARE_DEFAULT_RESULTTYPE.setClassid(SOFTWARE_RESULTTYPE_CLASSID);
SOFTWARE_DEFAULT_RESULTTYPE.setClassname(SOFTWARE_RESULTTYPE_CLASSID);
SOFTWARE_DEFAULT_RESULTTYPE.setSchemeid(DNET_RESULT_TYPOLOGIES);
SOFTWARE_DEFAULT_RESULTTYPE.setSchemename(DNET_RESULT_TYPOLOGIES);
ORP_DEFAULT_RESULTTYPE.setClassid(ORP_RESULTTYPE_CLASSID);
ORP_DEFAULT_RESULTTYPE.setClassname(ORP_RESULTTYPE_CLASSID);
ORP_DEFAULT_RESULTTYPE.setSchemeid(DNET_RESULT_TYPOLOGIES);
ORP_DEFAULT_RESULTTYPE.setSchemename(DNET_RESULT_TYPOLOGIES);
}
}

310
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/ModelSupport.java
View File

@ -1,149 +1,205 @@
package eu.dnetlib.dhp.schema.common;
import com.google.common.collect.Maps;
import eu.dnetlib.dhp.schema.oaf.*;
import java.util.Map;
import java.util.Optional;
import java.util.function.Function;
import com.google.common.collect.Maps;
import eu.dnetlib.dhp.schema.oaf.*;
/** Oaf model utility methods. */
public class ModelSupport {
/** Defines the mapping between the actual entity type and the main entity type */
private static Map<EntityType, MainEntityType> entityMapping = Maps.newHashMap();
/** Defines the mapping between the actual entity type and the main entity type */
private static final Map<EntityType, MainEntityType> entityMapping = Maps.newHashMap();
static {
entityMapping.put(EntityType.publication, MainEntityType.result);
entityMapping.put(EntityType.dataset, MainEntityType.result);
entityMapping.put(EntityType.otherresearchproduct, MainEntityType.result);
entityMapping.put(EntityType.software, MainEntityType.result);
entityMapping.put(EntityType.datasource, MainEntityType.datasource);
entityMapping.put(EntityType.organization, MainEntityType.organization);
entityMapping.put(EntityType.project, MainEntityType.project);
}
static {
entityMapping.put(EntityType.publication, MainEntityType.result);
entityMapping.put(EntityType.dataset, MainEntityType.result);
entityMapping.put(EntityType.otherresearchproduct, MainEntityType.result);
entityMapping.put(EntityType.software, MainEntityType.result);
entityMapping.put(EntityType.datasource, MainEntityType.datasource);
entityMapping.put(EntityType.organization, MainEntityType.organization);
entityMapping.put(EntityType.project, MainEntityType.project);
}
/**
* Defines the mapping between the actual entity types and the relative classes implementing
* them
*/
public static final Map<EntityType, Class> entityTypes = Maps.newHashMap();
/**
* Defines the mapping between the actual entity types and the relative classes implementing them
*/
public static final Map<EntityType, Class> entityTypes = Maps.newHashMap();
static {
entityTypes.put(EntityType.datasource, Datasource.class);
entityTypes.put(EntityType.organization, Organization.class);
entityTypes.put(EntityType.project, Project.class);
entityTypes.put(EntityType.dataset, Dataset.class);
entityTypes.put(EntityType.otherresearchproduct, OtherResearchProduct.class);
entityTypes.put(EntityType.software, Software.class);
entityTypes.put(EntityType.publication, Publication.class);
}
static {
entityTypes.put(EntityType.datasource, Datasource.class);
entityTypes.put(EntityType.organization, Organization.class);
entityTypes.put(EntityType.project, Project.class);
entityTypes.put(EntityType.dataset, Dataset.class);
entityTypes.put(EntityType.otherresearchproduct, OtherResearchProduct.class);
entityTypes.put(EntityType.software, Software.class);
entityTypes.put(EntityType.publication, Publication.class);
}
public static final Map<String, Class> oafTypes = Maps.newHashMap();
public static final Map<String, Class> oafTypes = Maps.newHashMap();
static {
oafTypes.put("datasource", Datasource.class);
oafTypes.put("organization", Organization.class);
oafTypes.put("project", Project.class);
oafTypes.put("dataset", Dataset.class);
oafTypes.put("otherresearchproduct", OtherResearchProduct.class);
oafTypes.put("software", Software.class);
oafTypes.put("publication", Publication.class);
oafTypes.put("relation", Relation.class);
}
static {
oafTypes.put("datasource", Datasource.class);
oafTypes.put("organization", Organization.class);
oafTypes.put("project", Project.class);
oafTypes.put("dataset", Dataset.class);
oafTypes.put("otherresearchproduct", OtherResearchProduct.class);
oafTypes.put("software", Software.class);
oafTypes.put("publication", Publication.class);
oafTypes.put("relation", Relation.class);
}
private static final String schemeTemplate = "dnet:%s_%s_relations";
private static final String schemeTemplate = "dnet:%s_%s_relations";
private ModelSupport() {}
private ModelSupport() {
}
/**
* Checks subclass-superclass relationship.
*
* @param subClazzObject Subclass object instance
* @param superClazzObject Superclass object instance
* @param <X> Subclass type
* @param <Y> Superclass type
* @return True if X is a subclass of Y
*/
public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(
X subClazzObject, Y superClazzObject) {
return isSubClass(subClazzObject.getClass(), superClazzObject.getClass());
}
/**
* Checks subclass-superclass relationship.
*
* @param subClazzObject Subclass object instance
* @param superClazzObject Superclass object instance
* @param <X> Subclass type
* @param <Y> Superclass type
* @return True if X is a subclass of Y
*/
public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(
X subClazzObject, Y superClazzObject) {
return isSubClass(subClazzObject.getClass(), superClazzObject.getClass());
}
/**
* Checks subclass-superclass relationship.
*
* @param subClazzObject Subclass object instance
* @param superClazz Superclass class
* @param <X> Subclass type
* @param <Y> Superclass type
* @return True if X is a subclass of Y
*/
public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(
X subClazzObject, Class<Y> superClazz) {
return isSubClass(subClazzObject.getClass(), superClazz);
}
/**
* Checks subclass-superclass relationship.
*
* @param subClazzObject Subclass object instance
* @param superClazz Superclass class
* @param <X> Subclass type
* @param <Y> Superclass type
* @return True if X is a subclass of Y
*/
public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(
X subClazzObject, Class<Y> superClazz) {
return isSubClass(subClazzObject.getClass(), superClazz);
}
/**
* Checks subclass-superclass relationship.
*
* @param subClazz Subclass class
* @param superClazz Superclass class
* @param <X> Subclass type
* @param <Y> Superclass type
* @return True if X is a subclass of Y
*/
public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(
Class<X> subClazz, Class<Y> superClazz) {
return superClazz.isAssignableFrom(subClazz);
}
/**
* Checks subclass-superclass relationship.
*
* @param subClazz Subclass class
* @param superClazz Superclass class
* @param <X> Subclass type
* @param <Y> Superclass type
* @return True if X is a subclass of Y
*/
public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(
Class<X> subClazz, Class<Y> superClazz) {
return superClazz.isAssignableFrom(subClazz);
}
/**
* Lists all the OAF model classes
*
* @param <T>
* @return
*/
public static <T extends Oaf> Class<T>[] getOafModelClasses() {
return new Class[] {
Author.class,
Context.class,
Country.class,
DataInfo.class,
Dataset.class,
Datasource.class,
ExternalReference.class,
ExtraInfo.class,
Field.class,
GeoLocation.class,
Instance.class,
Journal.class,
KeyValue.class,
Oaf.class,
OafEntity.class,
OAIProvenance.class,
Organization.class,
OriginDescription.class,
OtherResearchProduct.class,
Project.class,
Publication.class,
Qualifier.class,
Relation.class,
Result.class,
Software.class,
StructuredProperty.class
};
}
/**
* Lists all the OAF model classes
*
* @param <T>
* @return
*/
public static <T extends Oaf> Class<T>[] getOafModelClasses() {
return new Class[] {
Author.class,
Context.class,
Country.class,
DataInfo.class,
Dataset.class,
Datasource.class,
ExternalReference.class,
ExtraInfo.class,
Field.class,
GeoLocation.class,
Instance.class,
Journal.class,
KeyValue.class,
Oaf.class,
OafEntity.class,
OAIProvenance.class,
Organization.class,
OriginDescription.class,
OtherResearchProduct.class,
Project.class,
Publication.class,
Qualifier.class,
Relation.class,
Result.class,
Software.class,
StructuredProperty.class
};
}
public static String getMainType(final EntityType type) {
return entityMapping.get(type).name();
}
public static String getMainType(final EntityType type) {
return entityMapping.get(type).name();
}
public static boolean isResult(EntityType type) {
return MainEntityType.result.name().equals(getMainType(type));
}
public static boolean isResult(EntityType type) {
return MainEntityType.result.name().equals(getMainType(type));
}
public static String getScheme(final String sourceType, final String targetType) {
return String.format(
schemeTemplate,
entityMapping.get(EntityType.valueOf(sourceType)).name(),
entityMapping.get(EntityType.valueOf(targetType)).name());
}
public static String getScheme(final String sourceType, final String targetType) {
return String
.format(
schemeTemplate,
entityMapping.get(EntityType.valueOf(sourceType)).name(),
entityMapping.get(EntityType.valueOf(targetType)).name());
}
public static <T extends Oaf> Function<T, String> idFn() {
return x -> {
if (isSubClass(x, Relation.class)) {
return idFnForRelation(x);
}
return idFnForOafEntity(x);
};
}
private static <T extends Oaf> String idFnForRelation(T t) {
Relation r = (Relation) t;
return Optional
.ofNullable(r.getSource())
.map(
source -> Optional
.ofNullable(r.getTarget())
.map(
target -> Optional
.ofNullable(r.getRelType())
.map(
relType -> Optional
.ofNullable(r.getSubRelType())
.map(
subRelType -> Optional
.ofNullable(r.getRelClass())
.map(
relClass -> String
.join(
source,
target,
relType,
subRelType,
relClass))
.orElse(
String
.join(
source,
target,
relType,
subRelType)))
.orElse(String.join(source, target, relType)))
.orElse(String.join(source, target)))
.orElse(source))
.orElse(null);
}
private static <T extends Oaf> String idFnForOafEntity(T t) {
return ((OafEntity) t).getId();
}
}

119
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Author.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
@ -6,81 +7,83 @@ import java.util.Objects;
public class Author implements Serializable {
private String fullname;
private String fullname;
private String name;
private String name;
private String surname;
private String surname;
private Integer rank;
private Integer rank;
private List<StructuredProperty> pid;
private List<StructuredProperty> pid;
private List<Field<String>> affiliation;
private List<Field<String>> affiliation;
public String getFullname() {
return fullname;
}
public String getFullname() {
return fullname;
}
public void setFullname(String fullname) {
this.fullname = fullname;
}
public void setFullname(String fullname) {
this.fullname = fullname;
}
public String getName() {
return name;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public void setName(String name) {
this.name = name;
}
public String getSurname() {
return surname;
}
public String getSurname() {
return surname;
}
public void setSurname(String surname) {
this.surname = surname;
}
public void setSurname(String surname) {
this.surname = surname;
}
public Integer getRank() {
return rank;
}
public Integer getRank() {
return rank;
}
public void setRank(Integer rank) {
this.rank = rank;
}
public void setRank(Integer rank) {
this.rank = rank;
}
public List<StructuredProperty> getPid() {
return pid;
}
public List<StructuredProperty> getPid() {
return pid;
}
public void setPid(List<StructuredProperty> pid) {
this.pid = pid;
}
public void setPid(List<StructuredProperty> pid) {
this.pid = pid;
}
public List<Field<String>> getAffiliation() {
return affiliation;
}
public List<Field<String>> getAffiliation() {
return affiliation;
}
public void setAffiliation(List<Field<String>> affiliation) {
this.affiliation = affiliation;
}
public void setAffiliation(List<Field<String>> affiliation) {
this.affiliation = affiliation;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
Author author = (Author) o;
return Objects.equals(fullname, author.fullname)
&& Objects.equals(name, author.name)
&& Objects.equals(surname, author.surname)
&& Objects.equals(rank, author.rank)
&& Objects.equals(pid, author.pid)
&& Objects.equals(affiliation, author.affiliation);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Author author = (Author) o;
return Objects.equals(fullname, author.fullname)
&& Objects.equals(name, author.name)
&& Objects.equals(surname, author.surname)
&& Objects.equals(rank, author.rank)
&& Objects.equals(pid, author.pid)
&& Objects.equals(affiliation, author.affiliation);
}
@Override
public int hashCode() {
return Objects.hash(fullname, name, surname, rank, pid, affiliation);
}
@Override
public int hashCode() {
return Objects.hash(fullname, name, surname, rank, pid, affiliation);
}
}

56
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Context.java
View File

@ -1,42 +1,46 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
public class Context implements Serializable {
private String id;
private String id;
private List<DataInfo> dataInfo;
private List<DataInfo> dataInfo;
public String getId() {
return id;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public void setId(String id) {
this.id = id;
}
public List<DataInfo> getDataInfo() {
return dataInfo;
}
public List<DataInfo> getDataInfo() {
return dataInfo;
}
public void setDataInfo(List<DataInfo> dataInfo) {
this.dataInfo = dataInfo;
}
public void setDataInfo(List<DataInfo> dataInfo) {
this.dataInfo = dataInfo;
}
@Override
public int hashCode() {
return id == null ? 0 : id.hashCode();
}
@Override
public int hashCode() {
return id == null ? 0 : id.hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj) return true;
if (obj == null) return false;
if (getClass() != obj.getClass()) return false;
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Context other = (Context) obj;
Context other = (Context) obj;
return id.equals(other.getId());
}
return id.equals(other.getId());
}
}

42
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Country.java
View File

@ -1,30 +1,34 @@
package eu.dnetlib.dhp.schema.oaf;
import java.util.Objects;
public class Country extends Qualifier {
private DataInfo dataInfo;
private DataInfo dataInfo;
public DataInfo getDataInfo() {
return dataInfo;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
Country country = (Country) o;
return Objects.equals(dataInfo, country.dataInfo);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
if (!super.equals(o))
return false;
Country country = (Country) o;
return Objects.equals(dataInfo, country.dataInfo);
}
@Override
public int hashCode() {
return Objects.hash(super.hashCode(), dataInfo);
}
@Override
public int hashCode() {
return Objects.hash(super.hashCode(), dataInfo);
}
}

127
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/DataInfo.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
@ -5,82 +6,80 @@ import java.util.Objects;
public class DataInfo implements Serializable {
private Boolean invisible = false;
private Boolean inferred;
private Boolean deletedbyinference;
private String trust;
private String inferenceprovenance;
private Qualifier provenanceaction;
private Boolean invisible = false;
private Boolean inferred;
private Boolean deletedbyinference;
private String trust;
private String inferenceprovenance;
private Qualifier provenanceaction;
public Boolean getInvisible() {
return invisible;
}
public Boolean getInvisible() {
return invisible;
}
public void setInvisible(Boolean invisible) {
this.invisible = invisible;
}
public void setInvisible(Boolean invisible) {
this.invisible = invisible;
}
public Boolean getInferred() {
return inferred;
}
public Boolean getInferred() {
return inferred;
}
public void setInferred(Boolean inferred) {
this.inferred = inferred;
}
public void setInferred(Boolean inferred) {
this.inferred = inferred;
}
public Boolean getDeletedbyinference() {
return deletedbyinference;
}
public Boolean getDeletedbyinference() {
return deletedbyinference;
}
public void setDeletedbyinference(Boolean deletedbyinference) {
this.deletedbyinference = deletedbyinference;
}
public void setDeletedbyinference(Boolean deletedbyinference) {
this.deletedbyinference = deletedbyinference;
}
public String getTrust() {
return trust;
}
public String getTrust() {
return trust;
}
public void setTrust(String trust) {
this.trust = trust;
}
public void setTrust(String trust) {
this.trust = trust;
}
public String getInferenceprovenance() {
return inferenceprovenance;
}
public String getInferenceprovenance() {
return inferenceprovenance;
}
public void setInferenceprovenance(String inferenceprovenance) {
this.inferenceprovenance = inferenceprovenance;
}
public void setInferenceprovenance(String inferenceprovenance) {
this.inferenceprovenance = inferenceprovenance;
}
public Qualifier getProvenanceaction() {
return provenanceaction;
}
public Qualifier getProvenanceaction() {
return provenanceaction;
}
public void setProvenanceaction(Qualifier provenanceaction) {
this.provenanceaction = provenanceaction;
}
public void setProvenanceaction(Qualifier provenanceaction) {
this.provenanceaction = provenanceaction;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
DataInfo dataInfo = (DataInfo) o;
return Objects.equals(invisible, dataInfo.invisible)
&& Objects.equals(inferred, dataInfo.inferred)
&& Objects.equals(deletedbyinference, dataInfo.deletedbyinference)
&& Objects.equals(trust, dataInfo.trust)
&& Objects.equals(inferenceprovenance, dataInfo.inferenceprovenance)
&& Objects.equals(provenanceaction, dataInfo.provenanceaction);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
DataInfo dataInfo = (DataInfo) o;
return Objects.equals(invisible, dataInfo.invisible)
&& Objects.equals(inferred, dataInfo.inferred)
&& Objects.equals(deletedbyinference, dataInfo.deletedbyinference)
&& Objects.equals(trust, dataInfo.trust)
&& Objects.equals(inferenceprovenance, dataInfo.inferenceprovenance)
&& Objects.equals(provenanceaction, dataInfo.provenanceaction);
}
@Override
public int hashCode() {
return Objects.hash(
invisible,
inferred,
deletedbyinference,
trust,
inferenceprovenance,
provenanceaction);
}
@Override
public int hashCode() {
return Objects
.hash(
invisible, inferred, deletedbyinference, trust, inferenceprovenance, provenanceaction);
}
}

177
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Dataset.java
View File

@ -1,142 +1,115 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Objects;
import eu.dnetlib.dhp.schema.common.ModelConstants;
public class Dataset extends Result implements Serializable {
private Field<String> storagedate;
private Field<String> storagedate;
private Field<String> device;
private Field<String> device;
private Field<String> size;
private Field<String> size;
private Field<String> version;
private Field<String> version;
private Field<String> lastmetadataupdate;
private Field<String> lastmetadataupdate;
private Field<String> metadataversionnumber;
private Field<String> metadataversionnumber;
private List<GeoLocation> geolocation;
private List<GeoLocation> geolocation;
public Field<String> getStoragedate() {
return storagedate;
}
public Dataset() {
setResulttype(ModelConstants.DATASET_DEFAULT_RESULTTYPE);
}
public void setStoragedate(Field<String> storagedate) {
this.storagedate = storagedate;
}
public Field<String> getStoragedate() {
return storagedate;
}
public Field<String> getDevice() {
return device;
}
public void setStoragedate(Field<String> storagedate) {
this.storagedate = storagedate;
}
public void setDevice(Field<String> device) {
this.device = device;
}
public Field<String> getDevice() {
return device;
}
public Field<String> getSize() {
return size;
}
public void setDevice(Field<String> device) {
this.device = device;
}
public void setSize(Field<String> size) {
this.size = size;
}
public Field<String> getSize() {
return size;
}
public Field<String> getVersion() {
return version;
}
public void setSize(Field<String> size) {
this.size = size;
}
public void setVersion(Field<String> version) {
this.version = version;
}
public Field<String> getVersion() {
return version;
}
public Field<String> getLastmetadataupdate() {
return lastmetadataupdate;
}
public void setVersion(Field<String> version) {
this.version = version;
}
public void setLastmetadataupdate(Field<String> lastmetadataupdate) {
this.lastmetadataupdate = lastmetadataupdate;
}
public Field<String> getLastmetadataupdate() {
return lastmetadataupdate;
}
public Field<String> getMetadataversionnumber() {
return metadataversionnumber;
}
public void setLastmetadataupdate(Field<String> lastmetadataupdate) {
this.lastmetadataupdate = lastmetadataupdate;
}
public void setMetadataversionnumber(Field<String> metadataversionnumber) {
this.metadataversionnumber = metadataversionnumber;
}
public Field<String> getMetadataversionnumber() {
return metadataversionnumber;
}
public List<GeoLocation> getGeolocation() {
return geolocation;
}
public void setMetadataversionnumber(Field<String> metadataversionnumber) {
this.metadataversionnumber = metadataversionnumber;
}
public void setGeolocation(List<GeoLocation> geolocation) {
this.geolocation = geolocation;
}
public List<GeoLocation> getGeolocation() {
return geolocation;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
public void setGeolocation(List<GeoLocation> geolocation) {
this.geolocation = geolocation;
}
if (!Dataset.class.isAssignableFrom(e.getClass())) {
return;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
final Dataset d = (Dataset) e;
if (!Dataset.class.isAssignableFrom(e.getClass())) {
return;
}
storagedate =
d.getStoragedate() != null && compareTrust(this, e) < 0
? d.getStoragedate()
: storagedate;
final Dataset d = (Dataset) e;
device = d.getDevice() != null && compareTrust(this, e) < 0 ? d.getDevice() : device;
storagedate = d.getStoragedate() != null && compareTrust(this, e) < 0 ? d.getStoragedate() : storagedate;
size = d.getSize() != null && compareTrust(this, e) < 0 ? d.getSize() : size;
device = d.getDevice() != null && compareTrust(this, e) < 0 ? d.getDevice() : device;
version = d.getVersion() != null && compareTrust(this, e) < 0 ? d.getVersion() : version;
size = d.getSize() != null && compareTrust(this, e) < 0 ? d.getSize() : size;
lastmetadataupdate =
d.getLastmetadataupdate() != null && compareTrust(this, e) < 0
? d.getLastmetadataupdate()
: lastmetadataupdate;
version = d.getVersion() != null && compareTrust(this, e) < 0 ? d.getVersion() : version;
metadataversionnumber =
d.getMetadataversionnumber() != null && compareTrust(this, e) < 0
? d.getMetadataversionnumber()
: metadataversionnumber;
lastmetadataupdate = d.getLastmetadataupdate() != null && compareTrust(this, e) < 0
? d.getLastmetadataupdate()
: lastmetadataupdate;
geolocation = mergeLists(geolocation, d.getGeolocation());
metadataversionnumber = d.getMetadataversionnumber() != null && compareTrust(this, e) < 0
? d.getMetadataversionnumber()
: metadataversionnumber;
mergeOAFDataInfo(d);
}
geolocation = mergeLists(geolocation, d.getGeolocation());
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
Dataset dataset = (Dataset) o;
return Objects.equals(storagedate, dataset.storagedate)
&& Objects.equals(device, dataset.device)
&& Objects.equals(size, dataset.size)
&& Objects.equals(version, dataset.version)
&& Objects.equals(lastmetadataupdate, dataset.lastmetadataupdate)
&& Objects.equals(metadataversionnumber, dataset.metadataversionnumber)
&& Objects.equals(geolocation, dataset.geolocation);
}
@Override
public int hashCode() {
return Objects.hash(
super.hashCode(),
storagedate,
device,
size,
version,
lastmetadataupdate,
metadataversionnumber,
geolocation);
}
mergeOAFDataInfo(d);
}
}

887
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Datasource.java
View File

@ -1,599 +1,472 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Objects;
public class Datasource extends OafEntity implements Serializable {
private Qualifier datasourcetype;
private Qualifier datasourcetype;
private Qualifier openairecompatibility;
private Qualifier openairecompatibility;
private Field<String> officialname;
private Field<String> officialname;
private Field<String> englishname;
private Field<String> englishname;
private Field<String> websiteurl;
private Field<String> websiteurl;
private Field<String> logourl;
private Field<String> logourl;
private Field<String> contactemail;
private Field<String> contactemail;
private Field<String> namespaceprefix;
private Field<String> namespaceprefix;
private Field<String> latitude;
private Field<String> latitude;
private Field<String> longitude;
private Field<String> longitude;
private Field<String> dateofvalidation;
private Field<String> dateofvalidation;
private Field<String> description;
private Field<String> description;
private List<StructuredProperty> subjects;
private List<StructuredProperty> subjects;
// opendoar specific fields (od*)
private Field<String> odnumberofitems;
// opendoar specific fields (od*)
private Field<String> odnumberofitems;
private Field<String> odnumberofitemsdate;
private Field<String> odnumberofitemsdate;
private Field<String> odpolicies;
private Field<String> odpolicies;
private List<Field<String>> odlanguages;
private List<Field<String>> odlanguages;
private List<Field<String>> odcontenttypes;
private List<Field<String>> odcontenttypes;
private List<Field<String>> accessinfopackage;
private List<Field<String>> accessinfopackage;
// re3data fields
private Field<String> releasestartdate;
// re3data fields
private Field<String> releasestartdate;
private Field<String> releaseenddate;
private Field<String> releaseenddate;
private Field<String> missionstatementurl;
private Field<String> missionstatementurl;
private Field<Boolean> dataprovider;
private Field<Boolean> dataprovider;
private Field<Boolean> serviceprovider;
private Field<Boolean> serviceprovider;
// {open, restricted or closed}
private Field<String> databaseaccesstype;
// {open, restricted or closed}
private Field<String> databaseaccesstype;
// {open, restricted or closed}
private Field<String> datauploadtype;
// {open, restricted or closed}
private Field<String> datauploadtype;
// {feeRequired, registration, other}
private Field<String> databaseaccessrestriction;
// {feeRequired, registration, other}
private Field<String> databaseaccessrestriction;
// {feeRequired, registration, other}
private Field<String> datauploadrestriction;
// {feeRequired, registration, other}
private Field<String> datauploadrestriction;
private Field<Boolean> versioning;
private Field<Boolean> versioning;
private Field<String> citationguidelineurl;
private Field<String> citationguidelineurl;
// {yes, no, uknown}
private Field<String> qualitymanagementkind;
// {yes, no, uknown}
private Field<String> qualitymanagementkind;
private Field<String> pidsystems;
private Field<String> pidsystems;
private Field<String> certificates;
private Field<String> certificates;
private List<KeyValue> policies;
private List<KeyValue> policies;
private Journal journal;
private Journal journal;
public Qualifier getDatasourcetype() {
return datasourcetype;
}
public Qualifier getDatasourcetype() {
return datasourcetype;
}
public void setDatasourcetype(Qualifier datasourcetype) {
this.datasourcetype = datasourcetype;
}
public void setDatasourcetype(Qualifier datasourcetype) {
this.datasourcetype = datasourcetype;
}
public Qualifier getOpenairecompatibility() {
return openairecompatibility;
}
public Qualifier getOpenairecompatibility() {
return openairecompatibility;
}
public void setOpenairecompatibility(Qualifier openairecompatibility) {
this.openairecompatibility = openairecompatibility;
}
public void setOpenairecompatibility(Qualifier openairecompatibility) {
this.openairecompatibility = openairecompatibility;
}
public Field<String> getOfficialname() {
return officialname;
}
public Field<String> getOfficialname() {
return officialname;
}
public void setOfficialname(Field<String> officialname) {
this.officialname = officialname;
}
public void setOfficialname(Field<String> officialname) {
this.officialname = officialname;
}
public Field<String> getEnglishname() {
return englishname;
}
public Field<String> getEnglishname() {
return englishname;
}
public void setEnglishname(Field<String> englishname) {
this.englishname = englishname;
}
public void setEnglishname(Field<String> englishname) {
this.englishname = englishname;
}
public Field<String> getWebsiteurl() {
return websiteurl;
}
public Field<String> getWebsiteurl() {
return websiteurl;
}
public void setWebsiteurl(Field<String> websiteurl) {
this.websiteurl = websiteurl;
}
public void setWebsiteurl(Field<String> websiteurl) {
this.websiteurl = websiteurl;
}
public Field<String> getLogourl() {
return logourl;
}
public Field<String> getLogourl() {
return logourl;
}
public void setLogourl(Field<String> logourl) {
this.logourl = logourl;
}
public void setLogourl(Field<String> logourl) {
this.logourl = logourl;
}
public Field<String> getContactemail() {
return contactemail;
}
public Field<String> getContactemail() {
return contactemail;
}
public void setContactemail(Field<String> contactemail) {
this.contactemail = contactemail;
}
public void setContactemail(Field<String> contactemail) {
this.contactemail = contactemail;
}
public Field<String> getNamespaceprefix() {
return namespaceprefix;
}
public Field<String> getNamespaceprefix() {
return namespaceprefix;
}
public void setNamespaceprefix(Field<String> namespaceprefix) {
this.namespaceprefix = namespaceprefix;
}
public void setNamespaceprefix(Field<String> namespaceprefix) {
this.namespaceprefix = namespaceprefix;
}
public Field<String> getLatitude() {
return latitude;
}
public Field<String> getLatitude() {
return latitude;
}
public void setLatitude(Field<String> latitude) {
this.latitude = latitude;
}
public void setLatitude(Field<String> latitude) {
this.latitude = latitude;
}
public Field<String> getLongitude() {
return longitude;
}
public Field<String> getLongitude() {
return longitude;
}
public void setLongitude(Field<String> longitude) {
this.longitude = longitude;
}
public void setLongitude(Field<String> longitude) {
this.longitude = longitude;
}
public Field<String> getDateofvalidation() {
return dateofvalidation;
}
public Field<String> getDateofvalidation() {
return dateofvalidation;
}
public void setDateofvalidation(Field<String> dateofvalidation) {
this.dateofvalidation = dateofvalidation;
}
public void setDateofvalidation(Field<String> dateofvalidation) {
this.dateofvalidation = dateofvalidation;
}
public Field<String> getDescription() {
return description;
}
public Field<String> getDescription() {
return description;
}
public void setDescription(Field<String> description) {
this.description = description;
}
public void setDescription(Field<String> description) {
this.description = description;
}
public List<StructuredProperty> getSubjects() {
return subjects;
}
public List<StructuredProperty> getSubjects() {
return subjects;
}
public void setSubjects(List<StructuredProperty> subjects) {
this.subjects = subjects;
}
public void setSubjects(List<StructuredProperty> subjects) {
this.subjects = subjects;
}
public Field<String> getOdnumberofitems() {
return odnumberofitems;
}
public Field<String> getOdnumberofitems() {
return odnumberofitems;
}
public void setOdnumberofitems(Field<String> odnumberofitems) {
this.odnumberofitems = odnumberofitems;
}
public void setOdnumberofitems(Field<String> odnumberofitems) {
this.odnumberofitems = odnumberofitems;
}
public Field<String> getOdnumberofitemsdate() {
return odnumberofitemsdate;
}
public Field<String> getOdnumberofitemsdate() {
return odnumberofitemsdate;
}
public void setOdnumberofitemsdate(Field<String> odnumberofitemsdate) {
this.odnumberofitemsdate = odnumberofitemsdate;
}
public void setOdnumberofitemsdate(Field<String> odnumberofitemsdate) {
this.odnumberofitemsdate = odnumberofitemsdate;
}
public Field<String> getOdpolicies() {
return odpolicies;
}
public Field<String> getOdpolicies() {
return odpolicies;
}
public void setOdpolicies(Field<String> odpolicies) {
this.odpolicies = odpolicies;
}
public void setOdpolicies(Field<String> odpolicies) {
this.odpolicies = odpolicies;
}
public List<Field<String>> getOdlanguages() {
return odlanguages;
}
public List<Field<String>> getOdlanguages() {
return odlanguages;
}
public void setOdlanguages(List<Field<String>> odlanguages) {
this.odlanguages = odlanguages;
}
public void setOdlanguages(List<Field<String>> odlanguages) {
this.odlanguages = odlanguages;
}
public List<Field<String>> getOdcontenttypes() {
return odcontenttypes;
}
public List<Field<String>> getOdcontenttypes() {
return odcontenttypes;
}
public void setOdcontenttypes(List<Field<String>> odcontenttypes) {
this.odcontenttypes = odcontenttypes;
}
public void setOdcontenttypes(List<Field<String>> odcontenttypes) {
this.odcontenttypes = odcontenttypes;
}
public List<Field<String>> getAccessinfopackage() {
return accessinfopackage;
}
public List<Field<String>> getAccessinfopackage() {
return accessinfopackage;
}
public void setAccessinfopackage(List<Field<String>> accessinfopackage) {
this.accessinfopackage = accessinfopackage;
}
public void setAccessinfopackage(List<Field<String>> accessinfopackage) {
this.accessinfopackage = accessinfopackage;
}
public Field<String> getReleasestartdate() {
return releasestartdate;
}
public Field<String> getReleasestartdate() {
return releasestartdate;
}
public void setReleasestartdate(Field<String> releasestartdate) {
this.releasestartdate = releasestartdate;
}
public void setReleasestartdate(Field<String> releasestartdate) {
this.releasestartdate = releasestartdate;
}
public Field<String> getReleaseenddate() {
return releaseenddate;
}
public Field<String> getReleaseenddate() {
return releaseenddate;
}
public void setReleaseenddate(Field<String> releaseenddate) {
this.releaseenddate = releaseenddate;
}
public void setReleaseenddate(Field<String> releaseenddate) {
this.releaseenddate = releaseenddate;
}
public Field<String> getMissionstatementurl() {
return missionstatementurl;
}
public Field<String> getMissionstatementurl() {
return missionstatementurl;
}
public void setMissionstatementurl(Field<String> missionstatementurl) {
this.missionstatementurl = missionstatementurl;
}
public void setMissionstatementurl(Field<String> missionstatementurl) {
this.missionstatementurl = missionstatementurl;
}
public Field<Boolean> getDataprovider() {
return dataprovider;
}
public Field<Boolean> getDataprovider() {
return dataprovider;
}
public void setDataprovider(Field<Boolean> dataprovider) {
this.dataprovider = dataprovider;
}
public void setDataprovider(Field<Boolean> dataprovider) {
this.dataprovider = dataprovider;
}
public Field<Boolean> getServiceprovider() {
return serviceprovider;
}
public Field<Boolean> getServiceprovider() {
return serviceprovider;
}
public void setServiceprovider(Field<Boolean> serviceprovider) {
this.serviceprovider = serviceprovider;
}
public void setServiceprovider(Field<Boolean> serviceprovider) {
this.serviceprovider = serviceprovider;
}
public Field<String> getDatabaseaccesstype() {
return databaseaccesstype;
}
public Field<String> getDatabaseaccesstype() {
return databaseaccesstype;
}
public void setDatabaseaccesstype(Field<String> databaseaccesstype) {
this.databaseaccesstype = databaseaccesstype;
}
public Field<String> getDatauploadtype() {
return datauploadtype;
}
public void setDatauploadtype(Field<String> datauploadtype) {
this.datauploadtype = datauploadtype;
}
public Field<String> getDatabaseaccessrestriction() {
return databaseaccessrestriction;
}
public void setDatabaseaccessrestriction(Field<String> databaseaccessrestriction) {
this.databaseaccessrestriction = databaseaccessrestriction;
}
public Field<String> getDatauploadrestriction() {
return datauploadrestriction;
}
public void setDatauploadrestriction(Field<String> datauploadrestriction) {
this.datauploadrestriction = datauploadrestriction;
}
public Field<Boolean> getVersioning() {
return versioning;
}
public void setVersioning(Field<Boolean> versioning) {
this.versioning = versioning;
}
public Field<String> getCitationguidelineurl() {
return citationguidelineurl;
}
public void setCitationguidelineurl(Field<String> citationguidelineurl) {
this.citationguidelineurl = citationguidelineurl;
}
public Field<String> getQualitymanagementkind() {
return qualitymanagementkind;
}
public void setQualitymanagementkind(Field<String> qualitymanagementkind) {
this.qualitymanagementkind = qualitymanagementkind;
}
public Field<String> getPidsystems() {
return pidsystems;
}
public void setPidsystems(Field<String> pidsystems) {
this.pidsystems = pidsystems;
}
public Field<String> getCertificates() {
return certificates;
}
public void setCertificates(Field<String> certificates) {
this.certificates = certificates;
}
public List<KeyValue> getPolicies() {
return policies;
}
public void setPolicies(List<KeyValue> policies) {
this.policies = policies;
}
public Journal getJournal() {
return journal;
}
public void setJournal(Journal journal) {
this.journal = journal;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Datasource.class.isAssignableFrom(e.getClass())) {
return;
}
Datasource d = (Datasource) e;
datasourcetype =
d.getDatasourcetype() != null && compareTrust(this, e) < 0
? d.getDatasourcetype()
: datasourcetype;
openairecompatibility =
d.getOpenairecompatibility() != null && compareTrust(this, e) < 0
? d.getOpenairecompatibility()
: openairecompatibility;
officialname =
d.getOfficialname() != null && compareTrust(this, e) < 0
? d.getOfficialname()
: officialname;
englishname =
d.getEnglishname() != null && compareTrust(this, e) < 0
? d.getEnglishname()
: officialname;
websiteurl =
d.getWebsiteurl() != null && compareTrust(this, e) < 0
? d.getWebsiteurl()
: websiteurl;
logourl =
d.getLogourl() != null && compareTrust(this, e) < 0 ? d.getLogourl() : getLogourl();
contactemail =
d.getContactemail() != null && compareTrust(this, e) < 0
? d.getContactemail()
: contactemail;
namespaceprefix =
d.getNamespaceprefix() != null && compareTrust(this, e) < 0
? d.getNamespaceprefix()
: namespaceprefix;
latitude =
d.getLatitude() != null && compareTrust(this, e) < 0 ? d.getLatitude() : latitude;
longitude =
d.getLongitude() != null && compareTrust(this, e) < 0
? d.getLongitude()
: longitude;
dateofvalidation =
d.getDateofvalidation() != null && compareTrust(this, e) < 0
? d.getDateofvalidation()
: dateofvalidation;
description =
d.getDescription() != null && compareTrust(this, e) < 0
? d.getDescription()
: description;
subjects = mergeLists(subjects, d.getSubjects());
// opendoar specific fields (od*)
odnumberofitems =
d.getOdnumberofitems() != null && compareTrust(this, e) < 0
? d.getOdnumberofitems()
: odnumberofitems;
odnumberofitemsdate =
d.getOdnumberofitemsdate() != null && compareTrust(this, e) < 0
? d.getOdnumberofitemsdate()
: odnumberofitemsdate;
odpolicies =
d.getOdpolicies() != null && compareTrust(this, e) < 0
? d.getOdpolicies()
: odpolicies;
odlanguages = mergeLists(odlanguages, d.getOdlanguages());
odcontenttypes = mergeLists(odcontenttypes, d.getOdcontenttypes());
accessinfopackage = mergeLists(accessinfopackage, d.getAccessinfopackage());
// re3data fields
releasestartdate =
d.getReleasestartdate() != null && compareTrust(this, e) < 0
? d.getReleasestartdate()
: releasestartdate;
releaseenddate =
d.getReleaseenddate() != null && compareTrust(this, e) < 0
? d.getReleaseenddate()
: releaseenddate;
missionstatementurl =
d.getMissionstatementurl() != null && compareTrust(this, e) < 0
? d.getMissionstatementurl()
: missionstatementurl;
dataprovider =
d.getDataprovider() != null && compareTrust(this, e) < 0
? d.getDataprovider()
: dataprovider;
serviceprovider =
d.getServiceprovider() != null && compareTrust(this, e) < 0
? d.getServiceprovider()
: serviceprovider;
// {open, restricted or closed}
databaseaccesstype =
d.getDatabaseaccesstype() != null && compareTrust(this, e) < 0
? d.getDatabaseaccesstype()
: databaseaccesstype;
// {open, restricted or closed}
datauploadtype =
d.getDatauploadtype() != null && compareTrust(this, e) < 0
? d.getDatauploadtype()
: datauploadtype;
// {feeRequired, registration, other}
databaseaccessrestriction =
d.getDatabaseaccessrestriction() != null && compareTrust(this, e) < 0
? d.getDatabaseaccessrestriction()
: databaseaccessrestriction;
// {feeRequired, registration, other}
datauploadrestriction =
d.getDatauploadrestriction() != null && compareTrust(this, e) < 0
? d.getDatauploadrestriction()
: datauploadrestriction;
versioning =
d.getVersioning() != null && compareTrust(this, e) < 0
? d.getVersioning()
: versioning;
citationguidelineurl =
d.getCitationguidelineurl() != null && compareTrust(this, e) < 0
? d.getCitationguidelineurl()
: citationguidelineurl;
// {yes, no, unknown}
qualitymanagementkind =
d.getQualitymanagementkind() != null && compareTrust(this, e) < 0
? d.getQualitymanagementkind()
: qualitymanagementkind;
pidsystems =
d.getPidsystems() != null && compareTrust(this, e) < 0
? d.getPidsystems()
: pidsystems;
certificates =
d.getCertificates() != null && compareTrust(this, e) < 0
? d.getCertificates()
: certificates;
policies = mergeLists(policies, d.getPolicies());
journal = d.getJournal() != null && compareTrust(this, e) < 0 ? d.getJournal() : journal;
mergeOAFDataInfo(e);
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
Datasource that = (Datasource) o;
return Objects.equals(datasourcetype, that.datasourcetype)
&& Objects.equals(openairecompatibility, that.openairecompatibility)
&& Objects.equals(officialname, that.officialname)
&& Objects.equals(englishname, that.englishname)
&& Objects.equals(websiteurl, that.websiteurl)
&& Objects.equals(logourl, that.logourl)
&& Objects.equals(contactemail, that.contactemail)
&& Objects.equals(namespaceprefix, that.namespaceprefix)
&& Objects.equals(latitude, that.latitude)
&& Objects.equals(longitude, that.longitude)
&& Objects.equals(dateofvalidation, that.dateofvalidation)
&& Objects.equals(description, that.description)
&& Objects.equals(subjects, that.subjects)
&& Objects.equals(odnumberofitems, that.odnumberofitems)
&& Objects.equals(odnumberofitemsdate, that.odnumberofitemsdate)
&& Objects.equals(odpolicies, that.odpolicies)
&& Objects.equals(odlanguages, that.odlanguages)
&& Objects.equals(odcontenttypes, that.odcontenttypes)
&& Objects.equals(accessinfopackage, that.accessinfopackage)
&& Objects.equals(releasestartdate, that.releasestartdate)
&& Objects.equals(releaseenddate, that.releaseenddate)
&& Objects.equals(missionstatementurl, that.missionstatementurl)
&& Objects.equals(dataprovider, that.dataprovider)
&& Objects.equals(serviceprovider, that.serviceprovider)
&& Objects.equals(databaseaccesstype, that.databaseaccesstype)
&& Objects.equals(datauploadtype, that.datauploadtype)
&& Objects.equals(databaseaccessrestriction, that.databaseaccessrestriction)
&& Objects.equals(datauploadrestriction, that.datauploadrestriction)
&& Objects.equals(versioning, that.versioning)
&& Objects.equals(citationguidelineurl, that.citationguidelineurl)
&& Objects.equals(qualitymanagementkind, that.qualitymanagementkind)
&& Objects.equals(pidsystems, that.pidsystems)
&& Objects.equals(certificates, that.certificates)
&& Objects.equals(policies, that.policies)
&& Objects.equals(journal, that.journal);
}
@Override
public int hashCode() {
return Objects.hash(
super.hashCode(),
datasourcetype,
openairecompatibility,
officialname,
englishname,
websiteurl,
logourl,
contactemail,
namespaceprefix,
latitude,
longitude,
dateofvalidation,
description,
subjects,
odnumberofitems,
odnumberofitemsdate,
odpolicies,
odlanguages,
odcontenttypes,
accessinfopackage,
releasestartdate,
releaseenddate,
missionstatementurl,
dataprovider,
serviceprovider,
databaseaccesstype,
datauploadtype,
databaseaccessrestriction,
datauploadrestriction,
versioning,
citationguidelineurl,
qualitymanagementkind,
pidsystems,
certificates,
policies,
journal);
}
public void setDatabaseaccesstype(Field<String> databaseaccesstype) {
this.databaseaccesstype = databaseaccesstype;
}
public Field<String> getDatauploadtype() {
return datauploadtype;
}
public void setDatauploadtype(Field<String> datauploadtype) {
this.datauploadtype = datauploadtype;
}
public Field<String> getDatabaseaccessrestriction() {
return databaseaccessrestriction;
}
public void setDatabaseaccessrestriction(Field<String> databaseaccessrestriction) {
this.databaseaccessrestriction = databaseaccessrestriction;
}
public Field<String> getDatauploadrestriction() {
return datauploadrestriction;
}
public void setDatauploadrestriction(Field<String> datauploadrestriction) {
this.datauploadrestriction = datauploadrestriction;
}
public Field<Boolean> getVersioning() {
return versioning;
}
public void setVersioning(Field<Boolean> versioning) {
this.versioning = versioning;
}
public Field<String> getCitationguidelineurl() {
return citationguidelineurl;
}
public void setCitationguidelineurl(Field<String> citationguidelineurl) {
this.citationguidelineurl = citationguidelineurl;
}
public Field<String> getQualitymanagementkind() {
return qualitymanagementkind;
}
public void setQualitymanagementkind(Field<String> qualitymanagementkind) {
this.qualitymanagementkind = qualitymanagementkind;
}
public Field<String> getPidsystems() {
return pidsystems;
}
public void setPidsystems(Field<String> pidsystems) {
this.pidsystems = pidsystems;
}
public Field<String> getCertificates() {
return certificates;
}
public void setCertificates(Field<String> certificates) {
this.certificates = certificates;
}
public List<KeyValue> getPolicies() {
return policies;
}
public void setPolicies(List<KeyValue> policies) {
this.policies = policies;
}
public Journal getJournal() {
return journal;
}
public void setJournal(Journal journal) {
this.journal = journal;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Datasource.class.isAssignableFrom(e.getClass())) {
return;
}
Datasource d = (Datasource) e;
datasourcetype = d.getDatasourcetype() != null && compareTrust(this, e) < 0
? d.getDatasourcetype()
: datasourcetype;
openairecompatibility = d.getOpenairecompatibility() != null && compareTrust(this, e) < 0
? d.getOpenairecompatibility()
: openairecompatibility;
officialname = d.getOfficialname() != null && compareTrust(this, e) < 0
? d.getOfficialname()
: officialname;
englishname = d.getEnglishname() != null && compareTrust(this, e) < 0 ? d.getEnglishname() : officialname;
websiteurl = d.getWebsiteurl() != null && compareTrust(this, e) < 0 ? d.getWebsiteurl() : websiteurl;
logourl = d.getLogourl() != null && compareTrust(this, e) < 0 ? d.getLogourl() : getLogourl();
contactemail = d.getContactemail() != null && compareTrust(this, e) < 0
? d.getContactemail()
: contactemail;
namespaceprefix = d.getNamespaceprefix() != null && compareTrust(this, e) < 0
? d.getNamespaceprefix()
: namespaceprefix;
latitude = d.getLatitude() != null && compareTrust(this, e) < 0 ? d.getLatitude() : latitude;
longitude = d.getLongitude() != null && compareTrust(this, e) < 0 ? d.getLongitude() : longitude;
dateofvalidation = d.getDateofvalidation() != null && compareTrust(this, e) < 0
? d.getDateofvalidation()
: dateofvalidation;
description = d.getDescription() != null && compareTrust(this, e) < 0 ? d.getDescription() : description;
subjects = mergeLists(subjects, d.getSubjects());
// opendoar specific fields (od*)
odnumberofitems = d.getOdnumberofitems() != null && compareTrust(this, e) < 0
? d.getOdnumberofitems()
: odnumberofitems;
odnumberofitemsdate = d.getOdnumberofitemsdate() != null && compareTrust(this, e) < 0
? d.getOdnumberofitemsdate()
: odnumberofitemsdate;
odpolicies = d.getOdpolicies() != null && compareTrust(this, e) < 0 ? d.getOdpolicies() : odpolicies;
odlanguages = mergeLists(odlanguages, d.getOdlanguages());
odcontenttypes = mergeLists(odcontenttypes, d.getOdcontenttypes());
accessinfopackage = mergeLists(accessinfopackage, d.getAccessinfopackage());
// re3data fields
releasestartdate = d.getReleasestartdate() != null && compareTrust(this, e) < 0
? d.getReleasestartdate()
: releasestartdate;
releaseenddate = d.getReleaseenddate() != null && compareTrust(this, e) < 0
? d.getReleaseenddate()
: releaseenddate;
missionstatementurl = d.getMissionstatementurl() != null && compareTrust(this, e) < 0
? d.getMissionstatementurl()
: missionstatementurl;
dataprovider = d.getDataprovider() != null && compareTrust(this, e) < 0
? d.getDataprovider()
: dataprovider;
serviceprovider = d.getServiceprovider() != null && compareTrust(this, e) < 0
? d.getServiceprovider()
: serviceprovider;
// {open, restricted or closed}
databaseaccesstype = d.getDatabaseaccesstype() != null && compareTrust(this, e) < 0
? d.getDatabaseaccesstype()
: databaseaccesstype;
// {open, restricted or closed}
datauploadtype = d.getDatauploadtype() != null && compareTrust(this, e) < 0
? d.getDatauploadtype()
: datauploadtype;
// {feeRequired, registration, other}
databaseaccessrestriction = d.getDatabaseaccessrestriction() != null && compareTrust(this, e) < 0
? d.getDatabaseaccessrestriction()
: databaseaccessrestriction;
// {feeRequired, registration, other}
datauploadrestriction = d.getDatauploadrestriction() != null && compareTrust(this, e) < 0
? d.getDatauploadrestriction()
: datauploadrestriction;
versioning = d.getVersioning() != null && compareTrust(this, e) < 0 ? d.getVersioning() : versioning;
citationguidelineurl = d.getCitationguidelineurl() != null && compareTrust(this, e) < 0
? d.getCitationguidelineurl()
: citationguidelineurl;
// {yes, no, unknown}
qualitymanagementkind = d.getQualitymanagementkind() != null && compareTrust(this, e) < 0
? d.getQualitymanagementkind()
: qualitymanagementkind;
pidsystems = d.getPidsystems() != null && compareTrust(this, e) < 0 ? d.getPidsystems() : pidsystems;
certificates = d.getCertificates() != null && compareTrust(this, e) < 0
? d.getCertificates()
: certificates;
policies = mergeLists(policies, d.getPolicies());
journal = d.getJournal() != null && compareTrust(this, e) < 0 ? d.getJournal() : journal;
mergeOAFDataInfo(e);
}
}

170
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/ExternalReference.java
View File

@ -1,115 +1,119 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
public class ExternalReference implements Serializable {
// source
private String sitename;
// source
private String sitename;
// title
private String label;
// title
private String label;
// text()
private String url;
// text()
private String url;
// ?? not mapped yet ??
private String description;
// ?? not mapped yet ??
private String description;
// type
private Qualifier qualifier;
// type
private Qualifier qualifier;
// site internal identifier
private String refidentifier;
// site internal identifier
private String refidentifier;
// maps the oaf:reference/@query attribute
private String query;
// maps the oaf:reference/@query attribute
private String query;
// ExternalReferences might be also inferred
private DataInfo dataInfo;
// ExternalReferences might be also inferred
private DataInfo dataInfo;
public String getSitename() {
return sitename;
}
public String getSitename() {
return sitename;
}
public void setSitename(String sitename) {
this.sitename = sitename;
}
public void setSitename(String sitename) {
this.sitename = sitename;
}
public String getLabel() {
return label;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
public void setLabel(String label) {
this.label = label;
}
public String getUrl() {
return url;
}
public String getUrl() {
return url;
}
public void setUrl(String url) {
this.url = url;
}
public void setUrl(String url) {
this.url = url;
}
public String getDescription() {
return description;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public void setDescription(String description) {
this.description = description;
}
public Qualifier getQualifier() {
return qualifier;
}
public Qualifier getQualifier() {
return qualifier;
}
public void setQualifier(Qualifier qualifier) {
this.qualifier = qualifier;
}
public void setQualifier(Qualifier qualifier) {
this.qualifier = qualifier;
}
public String getRefidentifier() {
return refidentifier;
}
public String getRefidentifier() {
return refidentifier;
}
public void setRefidentifier(String refidentifier) {
this.refidentifier = refidentifier;
}
public void setRefidentifier(String refidentifier) {
this.refidentifier = refidentifier;
}
public String getQuery() {
return query;
}
public String getQuery() {
return query;
}
public void setQuery(String query) {
this.query = query;
}
public void setQuery(String query) {
this.query = query;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
ExternalReference that = (ExternalReference) o;
return Objects.equals(sitename, that.sitename)
&& Objects.equals(label, that.label)
&& Objects.equals(url, that.url)
&& Objects.equals(description, that.description)
&& Objects.equals(qualifier, that.qualifier)
&& Objects.equals(refidentifier, that.refidentifier)
&& Objects.equals(query, that.query)
&& Objects.equals(dataInfo, that.dataInfo);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
ExternalReference that = (ExternalReference) o;
return Objects.equals(sitename, that.sitename)
&& Objects.equals(label, that.label)
&& Objects.equals(url, that.url)
&& Objects.equals(description, that.description)
&& Objects.equals(qualifier, that.qualifier)
&& Objects.equals(refidentifier, that.refidentifier)
&& Objects.equals(query, that.query)
&& Objects.equals(dataInfo, that.dataInfo);
}
@Override
public int hashCode() {
return Objects.hash(
sitename, label, url, description, qualifier, refidentifier, query, dataInfo);
}
@Override
public int hashCode() {
return Objects
.hash(
sitename, label, url, description, qualifier, refidentifier, query, dataInfo);
}
}

105
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/ExtraInfo.java
View File

@ -1,74 +1,77 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
public class ExtraInfo implements Serializable {
private String name;
private String name;
private String typology;
private String typology;
private String provenance;
private String provenance;
private String trust;
private String trust;
// json containing a Citation or Statistics
private String value;
// json containing a Citation or Statistics
private String value;
public String getName() {
return name;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public void setName(String name) {
this.name = name;
}
public String getTypology() {
return typology;
}
public String getTypology() {
return typology;
}
public void setTypology(String typology) {
this.typology = typology;
}
public void setTypology(String typology) {
this.typology = typology;
}
public String getProvenance() {
return provenance;
}
public String getProvenance() {
return provenance;
}
public void setProvenance(String provenance) {
this.provenance = provenance;
}
public void setProvenance(String provenance) {
this.provenance = provenance;
}
public String getTrust() {
return trust;
}
public String getTrust() {
return trust;
}
public void setTrust(String trust) {
this.trust = trust;
}
public void setTrust(String trust) {
this.trust = trust;
}
public String getValue() {
return value;
}
public String getValue() {
return value;
}
public void setValue(String value) {
this.value = value;
}
public void setValue(String value) {
this.value = value;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
ExtraInfo extraInfo = (ExtraInfo) o;
return Objects.equals(name, extraInfo.name)
&& Objects.equals(typology, extraInfo.typology)
&& Objects.equals(provenance, extraInfo.provenance)
&& Objects.equals(trust, extraInfo.trust)
&& Objects.equals(value, extraInfo.value);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
ExtraInfo extraInfo = (ExtraInfo) o;
return Objects.equals(name, extraInfo.name)
&& Objects.equals(typology, extraInfo.typology)
&& Objects.equals(provenance, extraInfo.provenance)
&& Objects.equals(trust, extraInfo.trust)
&& Objects.equals(value, extraInfo.value);
}
@Override
public int hashCode() {
return Objects.hash(name, typology, provenance, trust, value);
}
@Override
public int hashCode() {
return Objects.hash(name, typology, provenance, trust, value);
}
}

56
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Field.java
View File

@ -1,40 +1,44 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
public class Field<T> implements Serializable {
private T value;
private T value;
private DataInfo dataInfo;
private DataInfo dataInfo;
public T getValue() {
return value;
}
public T getValue() {
return value;
}
public void setValue(T value) {
this.value = value;
}
public void setValue(T value) {
this.value = value;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
@Override
public int hashCode() {
return getValue() == null ? 0 : getValue().hashCode();
}
@Override
public int hashCode() {
return getValue() == null ? 0 : getValue().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj) return true;
if (obj == null) return false;
if (getClass() != obj.getClass()) return false;
Field<T> other = (Field<T>) obj;
return getValue().equals(other.getValue());
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Field<T> other = (Field<T>) obj;
return getValue().equals(other.getValue());
}
}

101
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/GeoLocation.java
View File

@ -1,69 +1,76 @@
package eu.dnetlib.dhp.schema.oaf;
import com.fasterxml.jackson.annotation.JsonIgnore;
import java.io.Serializable;
import org.apache.commons.lang3.StringUtils;
import com.fasterxml.jackson.annotation.JsonIgnore;
public class GeoLocation implements Serializable {
private String point;
private String point;
private String box;
private String box;
private String place;
private String place;
public String getPoint() {
return point;
}
public String getPoint() {
return point;
}
public void setPoint(String point) {
this.point = point;
}
public void setPoint(String point) {
this.point = point;
}
public String getBox() {
return box;
}
public String getBox() {
return box;
}
public void setBox(String box) {
this.box = box;
}
public void setBox(String box) {
this.box = box;
}
public String getPlace() {
return place;
}
public String getPlace() {
return place;
}
public void setPlace(String place) {
this.place = place;
}
public void setPlace(String place) {
this.place = place;
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(point) && StringUtils.isBlank(box) && StringUtils.isBlank(place);
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(point) && StringUtils.isBlank(box) && StringUtils.isBlank(place);
}
public String toComparableString() {
return isBlank()
? ""
: String.format(
"%s::%s%s",
point != null ? point.toLowerCase() : "",
box != null ? box.toLowerCase() : "",
place != null ? place.toLowerCase() : "");
}
public String toComparableString() {
return isBlank()
? ""
: String
.format(
"%s::%s%s",
point != null ? point.toLowerCase() : "",
box != null ? box.toLowerCase() : "",
place != null ? place.toLowerCase() : "");
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj) return true;
if (obj == null) return false;
if (getClass() != obj.getClass()) return false;
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
GeoLocation other = (GeoLocation) obj;
GeoLocation other = (GeoLocation) obj;
return toComparableString().equals(other.toComparableString());
}
return toComparableString().equals(other.toComparableString());
}
}

215
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Instance.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
@ -5,149 +6,147 @@ import java.util.List;
public class Instance implements Serializable {
private Field<String> license;
private Field<String> license;
private Qualifier accessright;
private Qualifier accessright;
private Qualifier instancetype;
private Qualifier instancetype;
private KeyValue hostedby;
private KeyValue hostedby;
private List<String> url;
private List<String> url;
// other research products specifc
private String distributionlocation;
// other research products specifc
private String distributionlocation;
private KeyValue collectedfrom;
private KeyValue collectedfrom;
private Field<String> dateofacceptance;
private Field<String> dateofacceptance;
// ( article | book ) processing charges. Defined here to cope with possible wrongly typed
// results
private Field<String> processingchargeamount;
// ( article | book ) processing charges. Defined here to cope with possible wrongly typed
// results
private Field<String> processingchargeamount;
// currency - alphabetic code describe in ISO-4217. Defined here to cope with possible wrongly
// typed results
private Field<String> processingchargecurrency;
// currency - alphabetic code describe in ISO-4217. Defined here to cope with possible wrongly
// typed results
private Field<String> processingchargecurrency;
private Field<String> refereed; // peer-review status
private Field<String> refereed; // peer-review status
public Field<String> getLicense() {
return license;
}
public Field<String> getLicense() {
return license;
}
public void setLicense(Field<String> license) {
this.license = license;
}
public void setLicense(Field<String> license) {
this.license = license;
}
public Qualifier getAccessright() {
return accessright;
}
public Qualifier getAccessright() {
return accessright;
}
public void setAccessright(Qualifier accessright) {
this.accessright = accessright;
}
public void setAccessright(Qualifier accessright) {
this.accessright = accessright;
}
public Qualifier getInstancetype() {
return instancetype;
}
public Qualifier getInstancetype() {
return instancetype;
}
public void setInstancetype(Qualifier instancetype) {
this.instancetype = instancetype;
}
public void setInstancetype(Qualifier instancetype) {
this.instancetype = instancetype;
}
public KeyValue getHostedby() {
return hostedby;
}
public KeyValue getHostedby() {
return hostedby;
}
public void setHostedby(KeyValue hostedby) {
this.hostedby = hostedby;
}
public void setHostedby(KeyValue hostedby) {
this.hostedby = hostedby;
}
public List<String> getUrl() {
return url;
}
public List<String> getUrl() {
return url;
}
public void setUrl(List<String> url) {
this.url = url;
}
public void setUrl(List<String> url) {
this.url = url;
}
public String getDistributionlocation() {
return distributionlocation;
}
public String getDistributionlocation() {
return distributionlocation;
}
public void setDistributionlocation(String distributionlocation) {
this.distributionlocation = distributionlocation;
}
public void setDistributionlocation(String distributionlocation) {
this.distributionlocation = distributionlocation;
}
public KeyValue getCollectedfrom() {
return collectedfrom;
}
public KeyValue getCollectedfrom() {
return collectedfrom;
}
public void setCollectedfrom(KeyValue collectedfrom) {
this.collectedfrom = collectedfrom;
}
public void setCollectedfrom(KeyValue collectedfrom) {
this.collectedfrom = collectedfrom;
}
public Field<String> getDateofacceptance() {
return dateofacceptance;
}
public Field<String> getDateofacceptance() {
return dateofacceptance;
}
public void setDateofacceptance(Field<String> dateofacceptance) {
this.dateofacceptance = dateofacceptance;
}
public void setDateofacceptance(Field<String> dateofacceptance) {
this.dateofacceptance = dateofacceptance;
}
public Field<String> getProcessingchargeamount() {
return processingchargeamount;
}
public Field<String> getProcessingchargeamount() {
return processingchargeamount;
}
public void setProcessingchargeamount(Field<String> processingchargeamount) {
this.processingchargeamount = processingchargeamount;
}
public void setProcessingchargeamount(Field<String> processingchargeamount) {
this.processingchargeamount = processingchargeamount;
}
public Field<String> getProcessingchargecurrency() {
return processingchargecurrency;
}
public Field<String> getProcessingchargecurrency() {
return processingchargecurrency;
}
public void setProcessingchargecurrency(Field<String> processingchargecurrency) {
this.processingchargecurrency = processingchargecurrency;
}
public void setProcessingchargecurrency(Field<String> processingchargecurrency) {
this.processingchargecurrency = processingchargecurrency;
}
public Field<String> getRefereed() {
return refereed;
}
public Field<String> getRefereed() {
return refereed;
}
public void setRefereed(Field<String> refereed) {
this.refereed = refereed;
}
public void setRefereed(Field<String> refereed) {
this.refereed = refereed;
}
public String toComparableString() {
return String.format(
"%s::%s::%s::%s",
hostedby != null && hostedby.getKey() != null
? hostedby.getKey().toLowerCase()
: "",
accessright != null && accessright.getClassid() != null
? accessright.getClassid()
: "",
instancetype != null && instancetype.getClassid() != null
? instancetype.getClassid()
: "",
url != null ? url : "");
}
public String toComparableString() {
return String
.format(
"%s::%s::%s::%s",
hostedby != null && hostedby.getKey() != null ? hostedby.getKey().toLowerCase() : "",
accessright != null && accessright.getClassid() != null ? accessright.getClassid() : "",
instancetype != null && instancetype.getClassid() != null ? instancetype.getClassid() : "",
url != null ? url : "");
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj) return true;
if (obj == null) return false;
if (getClass() != obj.getClass()) return false;
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Instance other = (Instance) obj;
Instance other = (Instance) obj;
return toComparableString().equals(other.toComparableString());
}
return toComparableString().equals(other.toComparableString());
}
}

240
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Journal.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
@ -5,159 +6,162 @@ import java.util.Objects;
public class Journal implements Serializable {
private String name;
private String name;
private String issnPrinted;
private String issnPrinted;
private String issnOnline;
private String issnOnline;
private String issnLinking;
private String issnLinking;
private String ep;
private String ep;
private String iss;
private String iss;
private String sp;
private String sp;
private String vol;
private String vol;
private String edition;
private String edition;
private String conferenceplace;
private String conferenceplace;
private String conferencedate;
private String conferencedate;
private DataInfo dataInfo;
private DataInfo dataInfo;
public String getName() {
return name;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public void setName(String name) {
this.name = name;
}
public String getIssnPrinted() {
return issnPrinted;
}
public String getIssnPrinted() {
return issnPrinted;
}
public void setIssnPrinted(String issnPrinted) {
this.issnPrinted = issnPrinted;
}
public void setIssnPrinted(String issnPrinted) {
this.issnPrinted = issnPrinted;
}
public String getIssnOnline() {
return issnOnline;
}
public String getIssnOnline() {
return issnOnline;
}
public void setIssnOnline(String issnOnline) {
this.issnOnline = issnOnline;
}
public void setIssnOnline(String issnOnline) {
this.issnOnline = issnOnline;
}
public String getIssnLinking() {
return issnLinking;
}
public String getIssnLinking() {
return issnLinking;
}
public void setIssnLinking(String issnLinking) {
this.issnLinking = issnLinking;
}
public void setIssnLinking(String issnLinking) {
this.issnLinking = issnLinking;
}
public String getEp() {
return ep;
}
public String getEp() {
return ep;
}
public void setEp(String ep) {
this.ep = ep;
}
public void setEp(String ep) {
this.ep = ep;
}
public String getIss() {
return iss;
}
public String getIss() {
return iss;
}
public void setIss(String iss) {
this.iss = iss;
}
public void setIss(String iss) {
this.iss = iss;
}
public String getSp() {
return sp;
}
public String getSp() {
return sp;
}
public void setSp(String sp) {
this.sp = sp;
}
public void setSp(String sp) {
this.sp = sp;
}
public String getVol() {
return vol;
}
public String getVol() {
return vol;
}
public void setVol(String vol) {
this.vol = vol;
}
public void setVol(String vol) {
this.vol = vol;
}
public String getEdition() {
return edition;
}
public String getEdition() {
return edition;
}
public void setEdition(String edition) {
this.edition = edition;
}
public void setEdition(String edition) {
this.edition = edition;
}
public String getConferenceplace() {
return conferenceplace;
}
public String getConferenceplace() {
return conferenceplace;
}
public void setConferenceplace(String conferenceplace) {
this.conferenceplace = conferenceplace;
}
public void setConferenceplace(String conferenceplace) {
this.conferenceplace = conferenceplace;
}
public String getConferencedate() {
return conferencedate;
}
public String getConferencedate() {
return conferencedate;
}
public void setConferencedate(String conferencedate) {
this.conferencedate = conferencedate;
}
public void setConferencedate(String conferencedate) {
this.conferencedate = conferencedate;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
Journal journal = (Journal) o;
return Objects.equals(name, journal.name)
&& Objects.equals(issnPrinted, journal.issnPrinted)
&& Objects.equals(issnOnline, journal.issnOnline)
&& Objects.equals(issnLinking, journal.issnLinking)
&& Objects.equals(ep, journal.ep)
&& Objects.equals(iss, journal.iss)
&& Objects.equals(sp, journal.sp)
&& Objects.equals(vol, journal.vol)
&& Objects.equals(edition, journal.edition)
&& Objects.equals(conferenceplace, journal.conferenceplace)
&& Objects.equals(conferencedate, journal.conferencedate)
&& Objects.equals(dataInfo, journal.dataInfo);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Journal journal = (Journal) o;
return Objects.equals(name, journal.name)
&& Objects.equals(issnPrinted, journal.issnPrinted)
&& Objects.equals(issnOnline, journal.issnOnline)
&& Objects.equals(issnLinking, journal.issnLinking)
&& Objects.equals(ep, journal.ep)
&& Objects.equals(iss, journal.iss)
&& Objects.equals(sp, journal.sp)
&& Objects.equals(vol, journal.vol)
&& Objects.equals(edition, journal.edition)
&& Objects.equals(conferenceplace, journal.conferenceplace)
&& Objects.equals(conferencedate, journal.conferencedate)
&& Objects.equals(dataInfo, journal.dataInfo);
}
@Override
public int hashCode() {
return Objects.hash(
name,
issnPrinted,
issnOnline,
issnLinking,
ep,
iss,
sp,
vol,
edition,
conferenceplace,
conferencedate,
dataInfo);
}
@Override
public int hashCode() {
return Objects
.hash(
name,
issnPrinted,
issnOnline,
issnLinking,
ep,
iss,
sp,
vol,
edition,
conferenceplace,
conferencedate,
dataInfo);
}
}

98
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/KeyValue.java
View File

@ -1,68 +1,74 @@
package eu.dnetlib.dhp.schema.oaf;
import com.fasterxml.jackson.annotation.JsonIgnore;
import java.io.Serializable;
import org.apache.commons.lang3.StringUtils;
import com.fasterxml.jackson.annotation.JsonIgnore;
public class KeyValue implements Serializable {
private String key;
private String key;
private String value;
private String value;
private DataInfo dataInfo;
private DataInfo dataInfo;
public String getKey() {
return key;
}
public String getKey() {
return key;
}
public void setKey(String key) {
this.key = key;
}
public void setKey(String key) {
this.key = key;
}
public String getValue() {
return value;
}
public String getValue() {
return value;
}
public void setValue(String value) {
this.value = value;
}
public void setValue(String value) {
this.value = value;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
public String toComparableString() {
return isBlank()
? ""
: String.format(
"%s::%s",
key != null ? key.toLowerCase() : "",
value != null ? value.toLowerCase() : "");
}
public String toComparableString() {
return isBlank()
? ""
: String
.format(
"%s::%s",
key != null ? key.toLowerCase() : "", value != null ? value.toLowerCase() : "");
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(key) && StringUtils.isBlank(value);
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(key) && StringUtils.isBlank(value);
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj) return true;
if (obj == null) return false;
if (getClass() != obj.getClass()) return false;
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
KeyValue other = (KeyValue) obj;
KeyValue other = (KeyValue) obj;
return toComparableString().equals(other.toComparableString());
}
return toComparableString().equals(other.toComparableString());
}
}

39
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OAIProvenance.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
@ -5,26 +6,28 @@ import java.util.Objects;
public class OAIProvenance implements Serializable {
private OriginDescription originDescription;
private OriginDescription originDescription;
public OriginDescription getOriginDescription() {
return originDescription;
}
public OriginDescription getOriginDescription() {
return originDescription;
}
public void setOriginDescription(OriginDescription originDescription) {
this.originDescription = originDescription;
}
public void setOriginDescription(OriginDescription originDescription) {
this.originDescription = originDescription;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
OAIProvenance that = (OAIProvenance) o;
return Objects.equals(originDescription, that.originDescription);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
OAIProvenance that = (OAIProvenance) o;
return Objects.equals(originDescription, that.originDescription);
}
@Override
public int hashCode() {
return Objects.hash(originDescription);
}
@Override
public int hashCode() {
return Objects.hash(originDescription);
}
}

92
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Oaf.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
@ -6,61 +7,64 @@ import java.util.Objects;
public abstract class Oaf implements Serializable {
protected List<KeyValue> collectedfrom;
protected List<KeyValue> collectedfrom;
private DataInfo dataInfo;
private DataInfo dataInfo;
private Long lastupdatetimestamp;
private Long lastupdatetimestamp;
public List<KeyValue> getCollectedfrom() {
return collectedfrom;
}
public List<KeyValue> getCollectedfrom() {
return collectedfrom;
}
public void setCollectedfrom(List<KeyValue> collectedfrom) {
this.collectedfrom = collectedfrom;
}
public void setCollectedfrom(List<KeyValue> collectedfrom) {
this.collectedfrom = collectedfrom;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
public Long getLastupdatetimestamp() {
return lastupdatetimestamp;
}
public Long getLastupdatetimestamp() {
return lastupdatetimestamp;
}
public void setLastupdatetimestamp(Long lastupdatetimestamp) {
this.lastupdatetimestamp = lastupdatetimestamp;
}
public void setLastupdatetimestamp(Long lastupdatetimestamp) {
this.lastupdatetimestamp = lastupdatetimestamp;
}
public void mergeOAFDataInfo(Oaf e) {
if (e.getDataInfo() != null && compareTrust(this, e) < 0) dataInfo = e.getDataInfo();
}
public void mergeOAFDataInfo(Oaf e) {
if (e.getDataInfo() != null && compareTrust(this, e) < 0)
dataInfo = e.getDataInfo();
}
protected String extractTrust(Oaf e) {
if (e == null || e.getDataInfo() == null || e.getDataInfo().getTrust() == null)
return "0.0";
return e.getDataInfo().getTrust();
}
protected String extractTrust(Oaf e) {
if (e == null || e.getDataInfo() == null || e.getDataInfo().getTrust() == null)
return "0.0";
return e.getDataInfo().getTrust();
}
protected int compareTrust(Oaf a, Oaf b) {
return extractTrust(a).compareTo(extractTrust(b));
}
protected int compareTrust(Oaf a, Oaf b) {
return extractTrust(a).compareTo(extractTrust(b));
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
Oaf oaf = (Oaf) o;
return Objects.equals(dataInfo, oaf.dataInfo)
&& Objects.equals(lastupdatetimestamp, oaf.lastupdatetimestamp);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Oaf oaf = (Oaf) o;
return Objects.equals(dataInfo, oaf.dataInfo)
&& Objects.equals(lastupdatetimestamp, oaf.lastupdatetimestamp);
}
@Override
public int hashCode() {
return Objects.hash(dataInfo, lastupdatetimestamp);
}
@Override
public int hashCode() {
return Objects.hash(dataInfo, lastupdatetimestamp);
}
}

184
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OafEntity.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
@ -6,134 +7,123 @@ import java.util.stream.Collectors;
public abstract class OafEntity extends Oaf implements Serializable {
private String id;
private String id;
private List<String> originalId;
private List<String> originalId;
private List<StructuredProperty> pid;
private List<StructuredProperty> pid;
private String dateofcollection;
private String dateofcollection;
private String dateoftransformation;
private String dateoftransformation;
private List<ExtraInfo> extraInfo;
private List<ExtraInfo> extraInfo;
private OAIProvenance oaiprovenance;
private OAIProvenance oaiprovenance;
public String getId() {
return id;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public void setId(String id) {
this.id = id;
}
public List<String> getOriginalId() {
return originalId;
}
public List<String> getOriginalId() {
return originalId;
}
public void setOriginalId(List<String> originalId) {
this.originalId = originalId;
}
public void setOriginalId(List<String> originalId) {
this.originalId = originalId;
}
public List<StructuredProperty> getPid() {
return pid;
}
public List<StructuredProperty> getPid() {
return pid;
}
public void setPid(List<StructuredProperty> pid) {
this.pid = pid;
}
public void setPid(List<StructuredProperty> pid) {
this.pid = pid;
}
public String getDateofcollection() {
return dateofcollection;
}
public String getDateofcollection() {
return dateofcollection;
}
public void setDateofcollection(String dateofcollection) {
this.dateofcollection = dateofcollection;
}
public void setDateofcollection(String dateofcollection) {
this.dateofcollection = dateofcollection;
}
public String getDateoftransformation() {
return dateoftransformation;
}
public String getDateoftransformation() {
return dateoftransformation;
}
public void setDateoftransformation(String dateoftransformation) {
this.dateoftransformation = dateoftransformation;
}
public void setDateoftransformation(String dateoftransformation) {
this.dateoftransformation = dateoftransformation;
}
public List<ExtraInfo> getExtraInfo() {
return extraInfo;
}
public List<ExtraInfo> getExtraInfo() {
return extraInfo;
}
public void setExtraInfo(List<ExtraInfo> extraInfo) {
this.extraInfo = extraInfo;
}
public void setExtraInfo(List<ExtraInfo> extraInfo) {
this.extraInfo = extraInfo;
}
public OAIProvenance getOaiprovenance() {
return oaiprovenance;
}
public OAIProvenance getOaiprovenance() {
return oaiprovenance;
}
public void setOaiprovenance(OAIProvenance oaiprovenance) {
this.oaiprovenance = oaiprovenance;
}
public void setOaiprovenance(OAIProvenance oaiprovenance) {
this.oaiprovenance = oaiprovenance;
}
public void mergeFrom(OafEntity e) {
public void mergeFrom(OafEntity e) {
if (e == null) return;
if (e == null)
return;
originalId = mergeLists(originalId, e.getOriginalId());
originalId = mergeLists(originalId, e.getOriginalId());
collectedfrom = mergeLists(collectedfrom, e.getCollectedfrom());
collectedfrom = mergeLists(collectedfrom, e.getCollectedfrom());
pid = mergeLists(pid, e.getPid());
pid = mergeLists(pid, e.getPid());
if (e.getDateofcollection() != null && compareTrust(this, e) < 0)
dateofcollection = e.getDateofcollection();
if (e.getDateofcollection() != null && compareTrust(this, e) < 0)
dateofcollection = e.getDateofcollection();
if (e.getDateoftransformation() != null && compareTrust(this, e) < 0)
dateoftransformation = e.getDateoftransformation();
if (e.getDateoftransformation() != null && compareTrust(this, e) < 0)
dateoftransformation = e.getDateoftransformation();
extraInfo = mergeLists(extraInfo, e.getExtraInfo());
extraInfo = mergeLists(extraInfo, e.getExtraInfo());
if (e.getOaiprovenance() != null && compareTrust(this, e) < 0)
oaiprovenance = e.getOaiprovenance();
}
if (e.getOaiprovenance() != null && compareTrust(this, e) < 0)
oaiprovenance = e.getOaiprovenance();
}
protected <T> List<T> mergeLists(final List<T>... lists) {
protected <T> List<T> mergeLists(final List<T>... lists) {
return Arrays.stream(lists)
.filter(Objects::nonNull)
.flatMap(List::stream)
.distinct()
.collect(Collectors.toList());
}
return Arrays
.stream(lists)
.filter(Objects::nonNull)
.flatMap(List::stream)
.distinct()
.collect(Collectors.toList());
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
OafEntity oafEntity = (OafEntity) o;
return Objects.equals(id, oafEntity.id)
&& Objects.equals(originalId, oafEntity.originalId)
&& Objects.equals(collectedfrom, oafEntity.collectedfrom)
&& Objects.equals(pid, oafEntity.pid)
&& Objects.equals(dateofcollection, oafEntity.dateofcollection)
&& Objects.equals(dateoftransformation, oafEntity.dateoftransformation)
&& Objects.equals(extraInfo, oafEntity.extraInfo)
&& Objects.equals(oaiprovenance, oafEntity.oaiprovenance);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
if (!super.equals(o))
return false;
OafEntity oafEntity = (OafEntity) o;
return Objects.equals(id, oafEntity.id);
}
@Override
public int hashCode() {
return Objects.hash(
super.hashCode(),
id,
originalId,
collectedfrom,
pid,
dateofcollection,
dateoftransformation,
extraInfo,
oaiprovenance);
}
@Override
public int hashCode() {
return Objects.hash(super.hashCode(), id);
}
}

382
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Organization.java
View File

@ -1,284 +1,214 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Objects;
public class Organization extends OafEntity implements Serializable {
private Field<String> legalshortname;
private Field<String> legalshortname;
private Field<String> legalname;
private Field<String> legalname;
private List<Field<String>> alternativeNames;
private List<Field<String>> alternativeNames;
private Field<String> websiteurl;
private Field<String> websiteurl;
private Field<String> logourl;
private Field<String> logourl;
private Field<String> eclegalbody;
private Field<String> eclegalbody;
private Field<String> eclegalperson;
private Field<String> eclegalperson;
private Field<String> ecnonprofit;
private Field<String> ecnonprofit;
private Field<String> ecresearchorganization;
private Field<String> ecresearchorganization;
private Field<String> echighereducation;
private Field<String> echighereducation;
private Field<String> ecinternationalorganizationeurinterests;
private Field<String> ecinternationalorganizationeurinterests;
private Field<String> ecinternationalorganization;
private Field<String> ecinternationalorganization;
private Field<String> ecenterprise;
private Field<String> ecenterprise;
private Field<String> ecsmevalidated;
private Field<String> ecsmevalidated;
private Field<String> ecnutscode;
private Field<String> ecnutscode;
private Qualifier country;
private Qualifier country;
public Field<String> getLegalshortname() {
return legalshortname;
}
public Field<String> getLegalshortname() {
return legalshortname;
}
public void setLegalshortname(Field<String> legalshortname) {
this.legalshortname = legalshortname;
}
public void setLegalshortname(Field<String> legalshortname) {
this.legalshortname = legalshortname;
}
public Field<String> getLegalname() {
return legalname;
}
public Field<String> getLegalname() {
return legalname;
}
public void setLegalname(Field<String> legalname) {
this.legalname = legalname;
}
public void setLegalname(Field<String> legalname) {
this.legalname = legalname;
}
public List<Field<String>> getAlternativeNames() {
return alternativeNames;
}
public List<Field<String>> getAlternativeNames() {
return alternativeNames;
}
public void setAlternativeNames(List<Field<String>> alternativeNames) {
this.alternativeNames = alternativeNames;
}
public void setAlternativeNames(List<Field<String>> alternativeNames) {
this.alternativeNames = alternativeNames;
}
public Field<String> getWebsiteurl() {
return websiteurl;
}
public Field<String> getWebsiteurl() {
return websiteurl;
}
public void setWebsiteurl(Field<String> websiteurl) {
this.websiteurl = websiteurl;
}
public void setWebsiteurl(Field<String> websiteurl) {
this.websiteurl = websiteurl;
}
public Field<String> getLogourl() {
return logourl;
}
public Field<String> getLogourl() {
return logourl;
}
public void setLogourl(Field<String> logourl) {
this.logourl = logourl;
}
public void setLogourl(Field<String> logourl) {
this.logourl = logourl;
}
public Field<String> getEclegalbody() {
return eclegalbody;
}
public Field<String> getEclegalbody() {
return eclegalbody;
}
public void setEclegalbody(Field<String> eclegalbody) {
this.eclegalbody = eclegalbody;
}
public void setEclegalbody(Field<String> eclegalbody) {
this.eclegalbody = eclegalbody;
}
public Field<String> getEclegalperson() {
return eclegalperson;
}
public Field<String> getEclegalperson() {
return eclegalperson;
}
public void setEclegalperson(Field<String> eclegalperson) {
this.eclegalperson = eclegalperson;
}
public void setEclegalperson(Field<String> eclegalperson) {
this.eclegalperson = eclegalperson;
}
public Field<String> getEcnonprofit() {
return ecnonprofit;
}
public Field<String> getEcnonprofit() {
return ecnonprofit;
}
public void setEcnonprofit(Field<String> ecnonprofit) {
this.ecnonprofit = ecnonprofit;
}
public void setEcnonprofit(Field<String> ecnonprofit) {
this.ecnonprofit = ecnonprofit;
}
public Field<String> getEcresearchorganization() {
return ecresearchorganization;
}
public Field<String> getEcresearchorganization() {
return ecresearchorganization;
}
public void setEcresearchorganization(Field<String> ecresearchorganization) {
this.ecresearchorganization = ecresearchorganization;
}
public void setEcresearchorganization(Field<String> ecresearchorganization) {
this.ecresearchorganization = ecresearchorganization;
}
public Field<String> getEchighereducation() {
return echighereducation;
}
public Field<String> getEchighereducation() {
return echighereducation;
}
public void setEchighereducation(Field<String> echighereducation) {
this.echighereducation = echighereducation;
}
public void setEchighereducation(Field<String> echighereducation) {
this.echighereducation = echighereducation;
}
public Field<String> getEcinternationalorganizationeurinterests() {
return ecinternationalorganizationeurinterests;
}
public Field<String> getEcinternationalorganizationeurinterests() {
return ecinternationalorganizationeurinterests;
}
public void setEcinternationalorganizationeurinterests(
Field<String> ecinternationalorganizationeurinterests) {
this.ecinternationalorganizationeurinterests = ecinternationalorganizationeurinterests;
}
public void setEcinternationalorganizationeurinterests(
Field<String> ecinternationalorganizationeurinterests) {
this.ecinternationalorganizationeurinterests = ecinternationalorganizationeurinterests;
}
public Field<String> getEcinternationalorganization() {
return ecinternationalorganization;
}
public Field<String> getEcinternationalorganization() {
return ecinternationalorganization;
}
public void setEcinternationalorganization(Field<String> ecinternationalorganization) {
this.ecinternationalorganization = ecinternationalorganization;
}
public void setEcinternationalorganization(Field<String> ecinternationalorganization) {
this.ecinternationalorganization = ecinternationalorganization;
}
public Field<String> getEcenterprise() {
return ecenterprise;
}
public Field<String> getEcenterprise() {
return ecenterprise;
}
public void setEcenterprise(Field<String> ecenterprise) {
this.ecenterprise = ecenterprise;
}
public void setEcenterprise(Field<String> ecenterprise) {
this.ecenterprise = ecenterprise;
}
public Field<String> getEcsmevalidated() {
return ecsmevalidated;
}
public Field<String> getEcsmevalidated() {
return ecsmevalidated;
}
public void setEcsmevalidated(Field<String> ecsmevalidated) {
this.ecsmevalidated = ecsmevalidated;
}
public void setEcsmevalidated(Field<String> ecsmevalidated) {
this.ecsmevalidated = ecsmevalidated;
}
public Field<String> getEcnutscode() {
return ecnutscode;
}
public Field<String> getEcnutscode() {
return ecnutscode;
}
public void setEcnutscode(Field<String> ecnutscode) {
this.ecnutscode = ecnutscode;
}
public void setEcnutscode(Field<String> ecnutscode) {
this.ecnutscode = ecnutscode;
}
public Qualifier getCountry() {
return country;
}
public Qualifier getCountry() {
return country;
}
public void setCountry(Qualifier country) {
this.country = country;
}
public void setCountry(Qualifier country) {
this.country = country;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Organization.class.isAssignableFrom(e.getClass())) {
return;
}
if (!Organization.class.isAssignableFrom(e.getClass())) {
return;
}
final Organization o = (Organization) e;
legalshortname =
o.getLegalshortname() != null && compareTrust(this, e) < 0
? o.getLegalshortname()
: legalshortname;
legalname =
o.getLegalname() != null && compareTrust(this, e) < 0
? o.getLegalname()
: legalname;
alternativeNames = mergeLists(o.getAlternativeNames(), alternativeNames);
websiteurl =
o.getWebsiteurl() != null && compareTrust(this, e) < 0
? o.getWebsiteurl()
: websiteurl;
logourl = o.getLogourl() != null && compareTrust(this, e) < 0 ? o.getLogourl() : logourl;
eclegalbody =
o.getEclegalbody() != null && compareTrust(this, e) < 0
? o.getEclegalbody()
: eclegalbody;
eclegalperson =
o.getEclegalperson() != null && compareTrust(this, e) < 0
? o.getEclegalperson()
: eclegalperson;
ecnonprofit =
o.getEcnonprofit() != null && compareTrust(this, e) < 0
? o.getEcnonprofit()
: ecnonprofit;
ecresearchorganization =
o.getEcresearchorganization() != null && compareTrust(this, e) < 0
? o.getEcresearchorganization()
: ecresearchorganization;
echighereducation =
o.getEchighereducation() != null && compareTrust(this, e) < 0
? o.getEchighereducation()
: echighereducation;
ecinternationalorganizationeurinterests =
o.getEcinternationalorganizationeurinterests() != null && compareTrust(this, e) < 0
? o.getEcinternationalorganizationeurinterests()
: ecinternationalorganizationeurinterests;
ecinternationalorganization =
o.getEcinternationalorganization() != null && compareTrust(this, e) < 0
? o.getEcinternationalorganization()
: ecinternationalorganization;
ecenterprise =
o.getEcenterprise() != null && compareTrust(this, e) < 0
? o.getEcenterprise()
: ecenterprise;
ecsmevalidated =
o.getEcsmevalidated() != null && compareTrust(this, e) < 0
? o.getEcsmevalidated()
: ecsmevalidated;
ecnutscode =
o.getEcnutscode() != null && compareTrust(this, e) < 0
? o.getEcnutscode()
: ecnutscode;
country = o.getCountry() != null && compareTrust(this, e) < 0 ? o.getCountry() : country;
mergeOAFDataInfo(o);
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
Organization that = (Organization) o;
return Objects.equals(legalshortname, that.legalshortname)
&& Objects.equals(legalname, that.legalname)
&& Objects.equals(alternativeNames, that.alternativeNames)
&& Objects.equals(websiteurl, that.websiteurl)
&& Objects.equals(logourl, that.logourl)
&& Objects.equals(eclegalbody, that.eclegalbody)
&& Objects.equals(eclegalperson, that.eclegalperson)
&& Objects.equals(ecnonprofit, that.ecnonprofit)
&& Objects.equals(ecresearchorganization, that.ecresearchorganization)
&& Objects.equals(echighereducation, that.echighereducation)
&& Objects.equals(
ecinternationalorganizationeurinterests,
that.ecinternationalorganizationeurinterests)
&& Objects.equals(ecinternationalorganization, that.ecinternationalorganization)
&& Objects.equals(ecenterprise, that.ecenterprise)
&& Objects.equals(ecsmevalidated, that.ecsmevalidated)
&& Objects.equals(ecnutscode, that.ecnutscode)
&& Objects.equals(country, that.country);
}
@Override
public int hashCode() {
return Objects.hash(
super.hashCode(),
legalshortname,
legalname,
alternativeNames,
websiteurl,
logourl,
eclegalbody,
eclegalperson,
ecnonprofit,
ecresearchorganization,
echighereducation,
ecinternationalorganizationeurinterests,
ecinternationalorganization,
ecenterprise,
ecsmevalidated,
ecnutscode,
country);
}
final Organization o = (Organization) e;
legalshortname = o.getLegalshortname() != null && compareTrust(this, e) < 0
? o.getLegalshortname()
: legalshortname;
legalname = o.getLegalname() != null && compareTrust(this, e) < 0 ? o.getLegalname() : legalname;
alternativeNames = mergeLists(o.getAlternativeNames(), alternativeNames);
websiteurl = o.getWebsiteurl() != null && compareTrust(this, e) < 0 ? o.getWebsiteurl() : websiteurl;
logourl = o.getLogourl() != null && compareTrust(this, e) < 0 ? o.getLogourl() : logourl;
eclegalbody = o.getEclegalbody() != null && compareTrust(this, e) < 0 ? o.getEclegalbody() : eclegalbody;
eclegalperson = o.getEclegalperson() != null && compareTrust(this, e) < 0
? o.getEclegalperson()
: eclegalperson;
ecnonprofit = o.getEcnonprofit() != null && compareTrust(this, e) < 0 ? o.getEcnonprofit() : ecnonprofit;
ecresearchorganization = o.getEcresearchorganization() != null && compareTrust(this, e) < 0
? o.getEcresearchorganization()
: ecresearchorganization;
echighereducation = o.getEchighereducation() != null && compareTrust(this, e) < 0
? o.getEchighereducation()
: echighereducation;
ecinternationalorganizationeurinterests = o.getEcinternationalorganizationeurinterests() != null
&& compareTrust(this, e) < 0
? o.getEcinternationalorganizationeurinterests()
: ecinternationalorganizationeurinterests;
ecinternationalorganization = o.getEcinternationalorganization() != null && compareTrust(this, e) < 0
? o.getEcinternationalorganization()
: ecinternationalorganization;
ecenterprise = o.getEcenterprise() != null && compareTrust(this, e) < 0
? o.getEcenterprise()
: ecenterprise;
ecsmevalidated = o.getEcsmevalidated() != null && compareTrust(this, e) < 0
? o.getEcsmevalidated()
: ecsmevalidated;
ecnutscode = o.getEcnutscode() != null && compareTrust(this, e) < 0 ? o.getEcnutscode() : ecnutscode;
country = o.getCountry() != null && compareTrust(this, e) < 0 ? o.getCountry() : country;
mergeOAFDataInfo(o);
}
}

120
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OriginDescription.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
@ -5,82 +6,83 @@ import java.util.Objects;
public class OriginDescription implements Serializable {
private String harvestDate;
private String harvestDate;
private Boolean altered = true;
private Boolean altered = true;
private String baseURL;
private String baseURL;
private String identifier;
private String identifier;
private String datestamp;
private String datestamp;
private String metadataNamespace;
private String metadataNamespace;
public String getHarvestDate() {
return harvestDate;
}
public String getHarvestDate() {
return harvestDate;
}
public void setHarvestDate(String harvestDate) {
this.harvestDate = harvestDate;
}
public void setHarvestDate(String harvestDate) {
this.harvestDate = harvestDate;
}
public Boolean getAltered() {
return altered;
}
public Boolean getAltered() {
return altered;
}
public void setAltered(Boolean altered) {
this.altered = altered;
}
public void setAltered(Boolean altered) {
this.altered = altered;
}
public String getBaseURL() {
return baseURL;
}
public String getBaseURL() {
return baseURL;
}
public void setBaseURL(String baseURL) {
this.baseURL = baseURL;
}
public void setBaseURL(String baseURL) {
this.baseURL = baseURL;
}
public String getIdentifier() {
return identifier;
}
public String getIdentifier() {
return identifier;
}
public void setIdentifier(String identifier) {
this.identifier = identifier;
}
public void setIdentifier(String identifier) {
this.identifier = identifier;
}
public String getDatestamp() {
return datestamp;
}
public String getDatestamp() {
return datestamp;
}
public void setDatestamp(String datestamp) {
this.datestamp = datestamp;
}
public void setDatestamp(String datestamp) {
this.datestamp = datestamp;
}
public String getMetadataNamespace() {
return metadataNamespace;
}
public String getMetadataNamespace() {
return metadataNamespace;
}
public void setMetadataNamespace(String metadataNamespace) {
this.metadataNamespace = metadataNamespace;
}
public void setMetadataNamespace(String metadataNamespace) {
this.metadataNamespace = metadataNamespace;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
OriginDescription that = (OriginDescription) o;
return Objects.equals(harvestDate, that.harvestDate)
&& Objects.equals(altered, that.altered)
&& Objects.equals(baseURL, that.baseURL)
&& Objects.equals(identifier, that.identifier)
&& Objects.equals(datestamp, that.datestamp)
&& Objects.equals(metadataNamespace, that.metadataNamespace);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
OriginDescription that = (OriginDescription) o;
return Objects.equals(harvestDate, that.harvestDate)
&& Objects.equals(altered, that.altered)
&& Objects.equals(baseURL, that.baseURL)
&& Objects.equals(identifier, that.identifier)
&& Objects.equals(datestamp, that.datestamp)
&& Objects.equals(metadataNamespace, that.metadataNamespace);
}
@Override
public int hashCode() {
return Objects.hash(
harvestDate, altered, baseURL, identifier, datestamp, metadataNamespace);
}
@Override
public int hashCode() {
return Objects.hash(harvestDate, altered, baseURL, identifier, datestamp, metadataNamespace);
}
}

88
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OtherResearchProduct.java
View File

@ -1,70 +1,60 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Objects;
import eu.dnetlib.dhp.schema.common.ModelConstants;
public class OtherResearchProduct extends Result implements Serializable {
private List<Field<String>> contactperson;
private List<Field<String>> contactperson;
private List<Field<String>> contactgroup;
private List<Field<String>> contactgroup;
private List<Field<String>> tool;
private List<Field<String>> tool;
public List<Field<String>> getContactperson() {
return contactperson;
}
public OtherResearchProduct() {
setResulttype(ModelConstants.ORP_DEFAULT_RESULTTYPE);
}
public void setContactperson(List<Field<String>> contactperson) {
this.contactperson = contactperson;
}
public List<Field<String>> getContactperson() {
return contactperson;
}
public List<Field<String>> getContactgroup() {
return contactgroup;
}
public void setContactperson(List<Field<String>> contactperson) {
this.contactperson = contactperson;
}
public void setContactgroup(List<Field<String>> contactgroup) {
this.contactgroup = contactgroup;
}
public List<Field<String>> getContactgroup() {
return contactgroup;
}
public List<Field<String>> getTool() {
return tool;
}
public void setContactgroup(List<Field<String>> contactgroup) {
this.contactgroup = contactgroup;
}
public void setTool(List<Field<String>> tool) {
this.tool = tool;
}
public List<Field<String>> getTool() {
return tool;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
public void setTool(List<Field<String>> tool) {
this.tool = tool;
}
if (!OtherResearchProduct.class.isAssignableFrom(e.getClass())) {
return;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
OtherResearchProduct o = (OtherResearchProduct) e;
if (!OtherResearchProduct.class.isAssignableFrom(e.getClass())) {
return;
}
contactperson = mergeLists(contactperson, o.getContactperson());
contactgroup = mergeLists(contactgroup, o.getContactgroup());
tool = mergeLists(tool, o.getTool());
mergeOAFDataInfo(e);
}
OtherResearchProduct o = (OtherResearchProduct) e;
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
OtherResearchProduct that = (OtherResearchProduct) o;
return Objects.equals(contactperson, that.contactperson)
&& Objects.equals(contactgroup, that.contactgroup)
&& Objects.equals(tool, that.tool);
}
@Override
public int hashCode() {
return Objects.hash(super.hashCode(), contactperson, contactgroup, tool);
}
contactperson = mergeLists(contactperson, o.getContactperson());
contactgroup = mergeLists(contactgroup, o.getContactgroup());
tool = mergeLists(tool, o.getTool());
mergeOAFDataInfo(e);
}
}

616
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Project.java
View File

@ -1,421 +1,325 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Objects;
public class Project extends OafEntity implements Serializable {
private Field<String> websiteurl;
private Field<String> websiteurl;
private Field<String> code;
private Field<String> code;
private Field<String> acronym;
private Field<String> acronym;
private Field<String> title;
private Field<String> title;
private Field<String> startdate;
private Field<String> startdate;
private Field<String> enddate;
private Field<String> enddate;
private Field<String> callidentifier;
private Field<String> callidentifier;
private Field<String> keywords;
private Field<String> keywords;
private Field<String> duration;
private Field<String> duration;
private Field<String> ecsc39;
private Field<String> ecsc39;
private Field<String> oamandatepublications;
private Field<String> oamandatepublications;
private Field<String> ecarticle29_3;
private Field<String> ecarticle29_3;
private List<StructuredProperty> subjects;
private List<StructuredProperty> subjects;
private List<Field<String>> fundingtree;
private List<Field<String>> fundingtree;
private Qualifier contracttype;
private Qualifier contracttype;
private Field<String> optional1;
private Field<String> optional1;
private Field<String> optional2;
private Field<String> optional2;
private Field<String> jsonextrainfo;
private Field<String> jsonextrainfo;
private Field<String> contactfullname;
private Field<String> contactfullname;
private Field<String> contactfax;
private Field<String> contactfax;
private Field<String> contactphone;
private Field<String> contactphone;
private Field<String> contactemail;
private Field<String> contactemail;
private Field<String> summary;
private Field<String> summary;
private Field<String> currency;
private Field<String> currency;
private Float totalcost;
private Float totalcost;
private Float fundedamount;
private Float fundedamount;
public Field<String> getWebsiteurl() {
return websiteurl;
}
public Field<String> getWebsiteurl() {
return websiteurl;
}
public void setWebsiteurl(Field<String> websiteurl) {
this.websiteurl = websiteurl;
}
public void setWebsiteurl(Field<String> websiteurl) {
this.websiteurl = websiteurl;
}
public Field<String> getCode() {
return code;
}
public Field<String> getCode() {
return code;
}
public void setCode(Field<String> code) {
this.code = code;
}
public void setCode(Field<String> code) {
this.code = code;
}
public Field<String> getAcronym() {
return acronym;
}
public Field<String> getAcronym() {
return acronym;
}
public void setAcronym(Field<String> acronym) {
this.acronym = acronym;
}
public void setAcronym(Field<String> acronym) {
this.acronym = acronym;
}
public Field<String> getTitle() {
return title;
}
public Field<String> getTitle() {
return title;
}
public void setTitle(Field<String> title) {
this.title = title;
}
public void setTitle(Field<String> title) {
this.title = title;
}
public Field<String> getStartdate() {
return startdate;
}
public Field<String> getStartdate() {
return startdate;
}
public void setStartdate(Field<String> startdate) {
this.startdate = startdate;
}
public void setStartdate(Field<String> startdate) {
this.startdate = startdate;
}
public Field<String> getEnddate() {
return enddate;
}
public Field<String> getEnddate() {
return enddate;
}
public void setEnddate(Field<String> enddate) {
this.enddate = enddate;
}
public void setEnddate(Field<String> enddate) {
this.enddate = enddate;
}
public Field<String> getCallidentifier() {
return callidentifier;
}
public Field<String> getCallidentifier() {
return callidentifier;
}
public void setCallidentifier(Field<String> callidentifier) {
this.callidentifier = callidentifier;
}
public void setCallidentifier(Field<String> callidentifier) {
this.callidentifier = callidentifier;
}
public Field<String> getKeywords() {
return keywords;
}
public Field<String> getKeywords() {
return keywords;
}
public void setKeywords(Field<String> keywords) {
this.keywords = keywords;
}
public void setKeywords(Field<String> keywords) {
this.keywords = keywords;
}
public Field<String> getDuration() {
return duration;
}
public Field<String> getDuration() {
return duration;
}
public void setDuration(Field<String> duration) {
this.duration = duration;
}
public void setDuration(Field<String> duration) {
this.duration = duration;
}
public Field<String> getEcsc39() {
return ecsc39;
}
public Field<String> getEcsc39() {
return ecsc39;
}
public void setEcsc39(Field<String> ecsc39) {
this.ecsc39 = ecsc39;
}
public void setEcsc39(Field<String> ecsc39) {
this.ecsc39 = ecsc39;
}
public Field<String> getOamandatepublications() {
return oamandatepublications;
}
public Field<String> getOamandatepublications() {
return oamandatepublications;
}
public void setOamandatepublications(Field<String> oamandatepublications) {
this.oamandatepublications = oamandatepublications;
}
public void setOamandatepublications(Field<String> oamandatepublications) {
this.oamandatepublications = oamandatepublications;
}
public Field<String> getEcarticle29_3() {
return ecarticle29_3;
}
public Field<String> getEcarticle29_3() {
return ecarticle29_3;
}
public void setEcarticle29_3(Field<String> ecarticle29_3) {
this.ecarticle29_3 = ecarticle29_3;
}
public void setEcarticle29_3(Field<String> ecarticle29_3) {
this.ecarticle29_3 = ecarticle29_3;
}
public List<StructuredProperty> getSubjects() {
return subjects;
}
public List<StructuredProperty> getSubjects() {
return subjects;
}
public void setSubjects(List<StructuredProperty> subjects) {
this.subjects = subjects;
}
public void setSubjects(List<StructuredProperty> subjects) {
this.subjects = subjects;
}
public List<Field<String>> getFundingtree() {
return fundingtree;
}
public List<Field<String>> getFundingtree() {
return fundingtree;
}
public void setFundingtree(List<Field<String>> fundingtree) {
this.fundingtree = fundingtree;
}
public void setFundingtree(List<Field<String>> fundingtree) {
this.fundingtree = fundingtree;
}
public Qualifier getContracttype() {
return contracttype;
}
public Qualifier getContracttype() {
return contracttype;
}
public void setContracttype(Qualifier contracttype) {
this.contracttype = contracttype;
}
public void setContracttype(Qualifier contracttype) {
this.contracttype = contracttype;
}
public Field<String> getOptional1() {
return optional1;
}
public Field<String> getOptional1() {
return optional1;
}
public void setOptional1(Field<String> optional1) {
this.optional1 = optional1;
}
public Field<String> getOptional2() {
return optional2;
}
public void setOptional2(Field<String> optional2) {
this.optional2 = optional2;
}
public Field<String> getJsonextrainfo() {
return jsonextrainfo;
}
public void setJsonextrainfo(Field<String> jsonextrainfo) {
this.jsonextrainfo = jsonextrainfo;
}
public Field<String> getContactfullname() {
return contactfullname;
}
public void setContactfullname(Field<String> contactfullname) {
this.contactfullname = contactfullname;
}
public Field<String> getContactfax() {
return contactfax;
}
public void setContactfax(Field<String> contactfax) {
this.contactfax = contactfax;
}
public Field<String> getContactphone() {
return contactphone;
}
public void setContactphone(Field<String> contactphone) {
this.contactphone = contactphone;
}
public Field<String> getContactemail() {
return contactemail;
}
public void setContactemail(Field<String> contactemail) {
this.contactemail = contactemail;
}
public Field<String> getSummary() {
return summary;
}
public void setSummary(Field<String> summary) {
this.summary = summary;
}
public Field<String> getCurrency() {
return currency;
}
public void setCurrency(Field<String> currency) {
this.currency = currency;
}
public Float getTotalcost() {
return totalcost;
}
public void setTotalcost(Float totalcost) {
this.totalcost = totalcost;
}
public Float getFundedamount() {
return fundedamount;
}
public void setFundedamount(Float fundedamount) {
this.fundedamount = fundedamount;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Project.class.isAssignableFrom(e.getClass())) {
return;
}
Project p = (Project) e;
websiteurl =
p.getWebsiteurl() != null && compareTrust(this, e) < 0
? p.getWebsiteurl()
: websiteurl;
code = p.getCode() != null && compareTrust(this, e) < 0 ? p.getCode() : code;
acronym = p.getAcronym() != null && compareTrust(this, e) < 0 ? p.getAcronym() : acronym;
title = p.getTitle() != null && compareTrust(this, e) < 0 ? p.getTitle() : title;
startdate =
p.getStartdate() != null && compareTrust(this, e) < 0
? p.getStartdate()
: startdate;
enddate = p.getEnddate() != null && compareTrust(this, e) < 0 ? p.getEnddate() : enddate;
callidentifier =
p.getCallidentifier() != null && compareTrust(this, e) < 0
? p.getCallidentifier()
: callidentifier;
keywords =
p.getKeywords() != null && compareTrust(this, e) < 0 ? p.getKeywords() : keywords;
duration =
p.getDuration() != null && compareTrust(this, e) < 0 ? p.getDuration() : duration;
ecsc39 = p.getEcsc39() != null && compareTrust(this, e) < 0 ? p.getEcsc39() : ecsc39;
oamandatepublications =
p.getOamandatepublications() != null && compareTrust(this, e) < 0
? p.getOamandatepublications()
: oamandatepublications;
ecarticle29_3 =
p.getEcarticle29_3() != null && compareTrust(this, e) < 0
? p.getEcarticle29_3()
: ecarticle29_3;
subjects = mergeLists(subjects, p.getSubjects());
fundingtree = mergeLists(fundingtree, p.getFundingtree());
contracttype =
p.getContracttype() != null && compareTrust(this, e) < 0
? p.getContracttype()
: contracttype;
optional1 =
p.getOptional1() != null && compareTrust(this, e) < 0
? p.getOptional1()
: optional1;
optional2 =
p.getOptional2() != null && compareTrust(this, e) < 0
? p.getOptional2()
: optional2;
jsonextrainfo =
p.getJsonextrainfo() != null && compareTrust(this, e) < 0
? p.getJsonextrainfo()
: jsonextrainfo;
contactfullname =
p.getContactfullname() != null && compareTrust(this, e) < 0
? p.getContactfullname()
: contactfullname;
contactfax =
p.getContactfax() != null && compareTrust(this, e) < 0
? p.getContactfax()
: contactfax;
contactphone =
p.getContactphone() != null && compareTrust(this, e) < 0
? p.getContactphone()
: contactphone;
contactemail =
p.getContactemail() != null && compareTrust(this, e) < 0
? p.getContactemail()
: contactemail;
summary = p.getSummary() != null && compareTrust(this, e) < 0 ? p.getSummary() : summary;
currency =
p.getCurrency() != null && compareTrust(this, e) < 0 ? p.getCurrency() : currency;
totalcost =
p.getTotalcost() != null && compareTrust(this, e) < 0
? p.getTotalcost()
: totalcost;
fundedamount =
p.getFundedamount() != null && compareTrust(this, e) < 0
? p.getFundedamount()
: fundedamount;
mergeOAFDataInfo(e);
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
Project project = (Project) o;
return Objects.equals(websiteurl, project.websiteurl)
&& Objects.equals(code, project.code)
&& Objects.equals(acronym, project.acronym)
&& Objects.equals(title, project.title)
&& Objects.equals(startdate, project.startdate)
&& Objects.equals(enddate, project.enddate)
&& Objects.equals(callidentifier, project.callidentifier)
&& Objects.equals(keywords, project.keywords)
&& Objects.equals(duration, project.duration)
&& Objects.equals(ecsc39, project.ecsc39)
&& Objects.equals(oamandatepublications, project.oamandatepublications)
&& Objects.equals(ecarticle29_3, project.ecarticle29_3)
&& Objects.equals(subjects, project.subjects)
&& Objects.equals(fundingtree, project.fundingtree)
&& Objects.equals(contracttype, project.contracttype)
&& Objects.equals(optional1, project.optional1)
&& Objects.equals(optional2, project.optional2)
&& Objects.equals(jsonextrainfo, project.jsonextrainfo)
&& Objects.equals(contactfullname, project.contactfullname)
&& Objects.equals(contactfax, project.contactfax)
&& Objects.equals(contactphone, project.contactphone)
&& Objects.equals(contactemail, project.contactemail)
&& Objects.equals(summary, project.summary)
&& Objects.equals(currency, project.currency)
&& Objects.equals(totalcost, project.totalcost)
&& Objects.equals(fundedamount, project.fundedamount);
}
@Override
public int hashCode() {
return Objects.hash(
super.hashCode(),
websiteurl,
code,
acronym,
title,
startdate,
enddate,
callidentifier,
keywords,
duration,
ecsc39,
oamandatepublications,
ecarticle29_3,
subjects,
fundingtree,
contracttype,
optional1,
optional2,
jsonextrainfo,
contactfullname,
contactfax,
contactphone,
contactemail,
summary,
currency,
totalcost,
fundedamount);
}
public void setOptional1(Field<String> optional1) {
this.optional1 = optional1;
}
public Field<String> getOptional2() {
return optional2;
}
public void setOptional2(Field<String> optional2) {
this.optional2 = optional2;
}
public Field<String> getJsonextrainfo() {
return jsonextrainfo;
}
public void setJsonextrainfo(Field<String> jsonextrainfo) {
this.jsonextrainfo = jsonextrainfo;
}
public Field<String> getContactfullname() {
return contactfullname;
}
public void setContactfullname(Field<String> contactfullname) {
this.contactfullname = contactfullname;
}
public Field<String> getContactfax() {
return contactfax;
}
public void setContactfax(Field<String> contactfax) {
this.contactfax = contactfax;
}
public Field<String> getContactphone() {
return contactphone;
}
public void setContactphone(Field<String> contactphone) {
this.contactphone = contactphone;
}
public Field<String> getContactemail() {
return contactemail;
}
public void setContactemail(Field<String> contactemail) {
this.contactemail = contactemail;
}
public Field<String> getSummary() {
return summary;
}
public void setSummary(Field<String> summary) {
this.summary = summary;
}
public Field<String> getCurrency() {
return currency;
}
public void setCurrency(Field<String> currency) {
this.currency = currency;
}
public Float getTotalcost() {
return totalcost;
}
public void setTotalcost(Float totalcost) {
this.totalcost = totalcost;
}
public Float getFundedamount() {
return fundedamount;
}
public void setFundedamount(Float fundedamount) {
this.fundedamount = fundedamount;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Project.class.isAssignableFrom(e.getClass())) {
return;
}
Project p = (Project) e;
websiteurl = p.getWebsiteurl() != null && compareTrust(this, e) < 0 ? p.getWebsiteurl() : websiteurl;
code = p.getCode() != null && compareTrust(this, e) < 0 ? p.getCode() : code;
acronym = p.getAcronym() != null && compareTrust(this, e) < 0 ? p.getAcronym() : acronym;
title = p.getTitle() != null && compareTrust(this, e) < 0 ? p.getTitle() : title;
startdate = p.getStartdate() != null && compareTrust(this, e) < 0 ? p.getStartdate() : startdate;
enddate = p.getEnddate() != null && compareTrust(this, e) < 0 ? p.getEnddate() : enddate;
callidentifier = p.getCallidentifier() != null && compareTrust(this, e) < 0
? p.getCallidentifier()
: callidentifier;
keywords = p.getKeywords() != null && compareTrust(this, e) < 0 ? p.getKeywords() : keywords;
duration = p.getDuration() != null && compareTrust(this, e) < 0 ? p.getDuration() : duration;
ecsc39 = p.getEcsc39() != null && compareTrust(this, e) < 0 ? p.getEcsc39() : ecsc39;
oamandatepublications = p.getOamandatepublications() != null && compareTrust(this, e) < 0
? p.getOamandatepublications()
: oamandatepublications;
ecarticle29_3 = p.getEcarticle29_3() != null && compareTrust(this, e) < 0
? p.getEcarticle29_3()
: ecarticle29_3;
subjects = mergeLists(subjects, p.getSubjects());
fundingtree = mergeLists(fundingtree, p.getFundingtree());
contracttype = p.getContracttype() != null && compareTrust(this, e) < 0
? p.getContracttype()
: contracttype;
optional1 = p.getOptional1() != null && compareTrust(this, e) < 0 ? p.getOptional1() : optional1;
optional2 = p.getOptional2() != null && compareTrust(this, e) < 0 ? p.getOptional2() : optional2;
jsonextrainfo = p.getJsonextrainfo() != null && compareTrust(this, e) < 0
? p.getJsonextrainfo()
: jsonextrainfo;
contactfullname = p.getContactfullname() != null && compareTrust(this, e) < 0
? p.getContactfullname()
: contactfullname;
contactfax = p.getContactfax() != null && compareTrust(this, e) < 0 ? p.getContactfax() : contactfax;
contactphone = p.getContactphone() != null && compareTrust(this, e) < 0
? p.getContactphone()
: contactphone;
contactemail = p.getContactemail() != null && compareTrust(this, e) < 0
? p.getContactemail()
: contactemail;
summary = p.getSummary() != null && compareTrust(this, e) < 0 ? p.getSummary() : summary;
currency = p.getCurrency() != null && compareTrust(this, e) < 0 ? p.getCurrency() : currency;
totalcost = p.getTotalcost() != null && compareTrust(this, e) < 0 ? p.getTotalcost() : totalcost;
fundedamount = p.getFundedamount() != null && compareTrust(this, e) < 0
? p.getFundedamount()
: fundedamount;
mergeOAFDataInfo(e);
}
}

57
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Publication.java
View File

@ -1,46 +1,39 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import eu.dnetlib.dhp.schema.common.ModelConstants;
public class Publication extends Result implements Serializable {
// publication specific
private Journal journal;
// publication specific
private Journal journal;
public Journal getJournal() {
return journal;
}
public Publication() {
setResulttype(ModelConstants.PUBLICATION_DEFAULT_RESULTTYPE);
}
public void setJournal(Journal journal) {
this.journal = journal;
}
public Journal getJournal() {
return journal;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
public void setJournal(Journal journal) {
this.journal = journal;
}
if (!Publication.class.isAssignableFrom(e.getClass())) {
return;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
Publication p = (Publication) e;
if (!Publication.class.isAssignableFrom(e.getClass())) {
return;
}
if (p.getJournal() != null && compareTrust(this, e) < 0) journal = p.getJournal();
mergeOAFDataInfo(e);
}
Publication p = (Publication) e;
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
Publication that = (Publication) o;
return Objects.equals(journal, that.journal);
}
@Override
public int hashCode() {
return Objects.hash(super.hashCode(), journal);
}
if (p.getJournal() != null && compareTrust(this, e) < 0)
journal = p.getJournal();
mergeOAFDataInfo(e);
}
}

123
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Qualifier.java
View File

@ -1,80 +1,87 @@
package eu.dnetlib.dhp.schema.oaf;
import com.fasterxml.jackson.annotation.JsonIgnore;
import java.io.Serializable;
import org.apache.commons.lang3.StringUtils;
import com.fasterxml.jackson.annotation.JsonIgnore;
public class Qualifier implements Serializable {
private String classid;
private String classname;
private String schemeid;
private String schemename;
private String classid;
private String classname;
private String schemeid;
private String schemename;
public String getClassid() {
return classid;
}
public String getClassid() {
return classid;
}
public void setClassid(String classid) {
this.classid = classid;
}
public void setClassid(String classid) {
this.classid = classid;
}
public String getClassname() {
return classname;
}
public String getClassname() {
return classname;
}
public void setClassname(String classname) {
this.classname = classname;
}
public void setClassname(String classname) {
this.classname = classname;
}
public String getSchemeid() {
return schemeid;
}
public String getSchemeid() {
return schemeid;
}
public void setSchemeid(String schemeid) {
this.schemeid = schemeid;
}
public void setSchemeid(String schemeid) {
this.schemeid = schemeid;
}
public String getSchemename() {
return schemename;
}
public String getSchemename() {
return schemename;
}
public void setSchemename(String schemename) {
this.schemename = schemename;
}
public void setSchemename(String schemename) {
this.schemename = schemename;
}
public String toComparableString() {
return isBlank()
? ""
: String.format(
"%s::%s::%s::%s",
classid != null ? classid : "",
classname != null ? classname : "",
schemeid != null ? schemeid : "",
schemename != null ? schemename : "");
}
public String toComparableString() {
return isBlank()
? ""
: String
.format(
"%s::%s::%s::%s",
classid != null ? classid : "",
classname != null ? classname : "",
schemeid != null ? schemeid : "",
schemename != null ? schemename : "");
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(classid)
&& StringUtils.isBlank(classname)
&& StringUtils.isBlank(schemeid)
&& StringUtils.isBlank(schemename);
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(classid)
&& StringUtils.isBlank(classname)
&& StringUtils.isBlank(schemeid)
&& StringUtils.isBlank(schemename);
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj) return true;
if (obj == null) return false;
if (getClass() != obj.getClass()) return false;
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Qualifier other = (Qualifier) obj;
Qualifier other = (Qualifier) obj;
return toComparableString().equals(other.toComparableString());
}
return toComparableString().equals(other.toComparableString());
}
}

142
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Relation.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf;
import static com.google.common.base.Preconditions.checkArgument;
@ -8,91 +9,96 @@ import java.util.stream.Stream;
public class Relation extends Oaf {
private String relType;
private String relType;
private String subRelType;
private String subRelType;
private String relClass;
private String relClass;
private String source;
private String source;
private String target;
private String target;
public String getRelType() {
return relType;
}
public String getRelType() {
return relType;
}
public void setRelType(final String relType) {
this.relType = relType;
}
public void setRelType(final String relType) {
this.relType = relType;
}
public String getSubRelType() {
return subRelType;
}
public String getSubRelType() {
return subRelType;
}
public void setSubRelType(final String subRelType) {
this.subRelType = subRelType;
}
public void setSubRelType(final String subRelType) {
this.subRelType = subRelType;
}
public String getRelClass() {
return relClass;
}
public String getRelClass() {
return relClass;
}
public void setRelClass(final String relClass) {
this.relClass = relClass;
}
public void setRelClass(final String relClass) {
this.relClass = relClass;
}
public String getSource() {
return source;
}
public String getSource() {
return source;
}
public void setSource(final String source) {
this.source = source;
}
public void setSource(final String source) {
this.source = source;
}
public String getTarget() {
return target;
}
public String getTarget() {
return target;
}
public void setTarget(final String target) {
this.target = target;
}
public void setTarget(final String target) {
this.target = target;
}
public void mergeFrom(final Relation r) {
public void mergeFrom(final Relation r) {
checkArgument(Objects.equals(getSource(), r.getSource()), "source ids must be equal");
checkArgument(Objects.equals(getTarget(), r.getTarget()), "target ids must be equal");
checkArgument(Objects.equals(getRelType(), r.getRelType()), "relType(s) must be equal");
checkArgument(
Objects.equals(getSubRelType(), r.getSubRelType()), "subRelType(s) must be equal");
checkArgument(Objects.equals(getRelClass(), r.getRelClass()), "relClass(es) must be equal");
checkArgument(Objects.equals(getSource(), r.getSource()), "source ids must be equal");
checkArgument(Objects.equals(getTarget(), r.getTarget()), "target ids must be equal");
checkArgument(Objects.equals(getRelType(), r.getRelType()), "relType(s) must be equal");
checkArgument(
Objects.equals(getSubRelType(), r.getSubRelType()), "subRelType(s) must be equal");
checkArgument(Objects.equals(getRelClass(), r.getRelClass()), "relClass(es) must be equal");
setCollectedfrom(
Stream.concat(
Optional.ofNullable(getCollectedfrom())
.map(Collection::stream)
.orElse(Stream.empty()),
Optional.ofNullable(r.getCollectedfrom())
.map(Collection::stream)
.orElse(Stream.empty()))
.distinct() // relies on KeyValue.equals
.collect(Collectors.toList()));
}
setCollectedfrom(
Stream
.concat(
Optional
.ofNullable(getCollectedfrom())
.map(Collection::stream)
.orElse(Stream.empty()),
Optional
.ofNullable(r.getCollectedfrom())
.map(Collection::stream)
.orElse(Stream.empty()))
.distinct() // relies on KeyValue.equals
.collect(Collectors.toList()));
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
Relation relation = (Relation) o;
return relType.equals(relation.relType)
&& subRelType.equals(relation.subRelType)
&& relClass.equals(relation.relClass)
&& source.equals(relation.source)
&& target.equals(relation.target);
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Relation relation = (Relation) o;
return relType.equals(relation.relType)
&& subRelType.equals(relation.subRelType)
&& relClass.equals(relation.relClass)
&& source.equals(relation.source)
&& target.equals(relation.target);
}
@Override
public int hashCode() {
return Objects.hash(relType, subRelType, relClass, source, target, collectedfrom);
}
@Override
public int hashCode() {
return Objects.hash(relType, subRelType, relClass, source, target, collectedfrom);
}
}

502
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Result.java
View File

@ -1,345 +1,297 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Comparator;
import java.util.List;
import java.util.Objects;
public class Result extends OafEntity implements Serializable {
private List<Author> author;
private List<Author> author;
// resulttype allows subclassing results into publications | datasets | software
private Qualifier resulttype;
// resulttype allows subclassing results into publications | datasets | software
private Qualifier resulttype;
// common fields
private Qualifier language;
// common fields
private Qualifier language;
private List<Country> country;
private List<Country> country;
private List<StructuredProperty> subject;
private List<StructuredProperty> subject;
private List<StructuredProperty> title;
private List<StructuredProperty> title;
private List<StructuredProperty> relevantdate;
private List<StructuredProperty> relevantdate;
private List<Field<String>> description;
private List<Field<String>> description;
private Field<String> dateofacceptance;
private Field<String> dateofacceptance;
private Field<String> publisher;
private Field<String> publisher;
private Field<String> embargoenddate;
private Field<String> embargoenddate;
private List<Field<String>> source;
private List<Field<String>> source;
private List<Field<String>> fulltext; // remove candidate
private List<Field<String>> fulltext; // remove candidate
private List<Field<String>> format;
private List<Field<String>> format;
private List<Field<String>> contributor;
private List<Field<String>> contributor;
private Qualifier resourcetype;
private Qualifier resourcetype;
private List<Field<String>> coverage;
private List<Field<String>> coverage;
private Qualifier bestaccessright;
private Qualifier bestaccessright;
private List<Context> context;
private List<Context> context;
private List<ExternalReference> externalReference;
private List<ExternalReference> externalReference;
private List<Instance> instance;
private List<Instance> instance;
public List<Author> getAuthor() {
return author;
}
public List<Author> getAuthor() {
return author;
}
public void setAuthor(List<Author> author) {
this.author = author;
}
public void setAuthor(List<Author> author) {
this.author = author;
}
public Qualifier getResulttype() {
return resulttype;
}
public Qualifier getResulttype() {
return resulttype;
}
public void setResulttype(Qualifier resulttype) {
this.resulttype = resulttype;
}
public void setResulttype(Qualifier resulttype) {
this.resulttype = resulttype;
}
public Qualifier getLanguage() {
return language;
}
public Qualifier getLanguage() {
return language;
}
public void setLanguage(Qualifier language) {
this.language = language;
}
public void setLanguage(Qualifier language) {
this.language = language;
}
public List<Country> getCountry() {
return country;
}
public List<Country> getCountry() {
return country;
}
public void setCountry(List<Country> country) {
this.country = country;
}
public void setCountry(List<Country> country) {
this.country = country;
}
public List<StructuredProperty> getSubject() {
return subject;
}
public List<StructuredProperty> getSubject() {
return subject;
}
public void setSubject(List<StructuredProperty> subject) {
this.subject = subject;
}
public void setSubject(List<StructuredProperty> subject) {
this.subject = subject;
}
public List<StructuredProperty> getTitle() {
return title;
}
public List<StructuredProperty> getTitle() {
return title;
}
public void setTitle(List<StructuredProperty> title) {
this.title = title;
}
public void setTitle(List<StructuredProperty> title) {
this.title = title;
}
public List<StructuredProperty> getRelevantdate() {
return relevantdate;
}
public List<StructuredProperty> getRelevantdate() {
return relevantdate;
}
public void setRelevantdate(List<StructuredProperty> relevantdate) {
this.relevantdate = relevantdate;
}
public void setRelevantdate(List<StructuredProperty> relevantdate) {
this.relevantdate = relevantdate;
}
public List<Field<String>> getDescription() {
return description;
}
public List<Field<String>> getDescription() {
return description;
}
public void setDescription(List<Field<String>> description) {
this.description = description;
}
public void setDescription(List<Field<String>> description) {
this.description = description;
}
public Field<String> getDateofacceptance() {
return dateofacceptance;
}
public Field<String> getDateofacceptance() {
return dateofacceptance;
}
public void setDateofacceptance(Field<String> dateofacceptance) {
this.dateofacceptance = dateofacceptance;
}
public void setDateofacceptance(Field<String> dateofacceptance) {
this.dateofacceptance = dateofacceptance;
}
public Field<String> getPublisher() {
return publisher;
}
public Field<String> getPublisher() {
return publisher;
}
public void setPublisher(Field<String> publisher) {
this.publisher = publisher;
}
public void setPublisher(Field<String> publisher) {
this.publisher = publisher;
}
public Field<String> getEmbargoenddate() {
return embargoenddate;
}
public Field<String> getEmbargoenddate() {
return embargoenddate;
}
public void setEmbargoenddate(Field<String> embargoenddate) {
this.embargoenddate = embargoenddate;
}
public void setEmbargoenddate(Field<String> embargoenddate) {
this.embargoenddate = embargoenddate;
}
public List<Field<String>> getSource() {
return source;
}
public List<Field<String>> getSource() {
return source;
}
public void setSource(List<Field<String>> source) {
this.source = source;
}
public void setSource(List<Field<String>> source) {
this.source = source;
}
public List<Field<String>> getFulltext() {
return fulltext;
}
public List<Field<String>> getFulltext() {
return fulltext;
}
public void setFulltext(List<Field<String>> fulltext) {
this.fulltext = fulltext;
}
public void setFulltext(List<Field<String>> fulltext) {
this.fulltext = fulltext;
}
public List<Field<String>> getFormat() {
return format;
}
public List<Field<String>> getFormat() {
return format;
}
public void setFormat(List<Field<String>> format) {
this.format = format;
}
public void setFormat(List<Field<String>> format) {
this.format = format;
}
public List<Field<String>> getContributor() {
return contributor;
}
public List<Field<String>> getContributor() {
return contributor;
}
public void setContributor(List<Field<String>> contributor) {
this.contributor = contributor;
}
public void setContributor(List<Field<String>> contributor) {
this.contributor = contributor;
}
public Qualifier getResourcetype() {
return resourcetype;
}
public Qualifier getResourcetype() {
return resourcetype;
}
public void setResourcetype(Qualifier resourcetype) {
this.resourcetype = resourcetype;
}
public void setResourcetype(Qualifier resourcetype) {
this.resourcetype = resourcetype;
}
public List<Field<String>> getCoverage() {
return coverage;
}
public List<Field<String>> getCoverage() {
return coverage;
}
public void setCoverage(List<Field<String>> coverage) {
this.coverage = coverage;
}
public void setCoverage(List<Field<String>> coverage) {
this.coverage = coverage;
}
public Qualifier getBestaccessright() {
return bestaccessright;
}
public Qualifier getBestaccessright() {
return bestaccessright;
}
public void setBestaccessright(Qualifier bestaccessright) {
this.bestaccessright = bestaccessright;
}
public void setBestaccessright(Qualifier bestaccessright) {
this.bestaccessright = bestaccessright;
}
public List<Context> getContext() {
return context;
}
public List<Context> getContext() {
return context;
}
public void setContext(List<Context> context) {
this.context = context;
}
public void setContext(List<Context> context) {
this.context = context;
}
public List<ExternalReference> getExternalReference() {
return externalReference;
}
public List<ExternalReference> getExternalReference() {
return externalReference;
}
public void setExternalReference(List<ExternalReference> externalReference) {
this.externalReference = externalReference;
}
public void setExternalReference(List<ExternalReference> externalReference) {
this.externalReference = externalReference;
}
public List<Instance> getInstance() {
return instance;
}
public void setInstance(List<Instance> instance) {
this.instance = instance;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Result.class.isAssignableFrom(e.getClass())) {
return;
}
Result r = (Result) e;
instance = mergeLists(instance, r.getInstance());
if (r.getResulttype() != null && compareTrust(this, r) < 0) resulttype = r.getResulttype();
if (r.getLanguage() != null && compareTrust(this, r) < 0) language = r.getLanguage();
country = mergeLists(country, r.getCountry());
subject = mergeLists(subject, r.getSubject());
title = mergeLists(title, r.getTitle());
relevantdate = mergeLists(relevantdate, r.getRelevantdate());
description = longestLists(description, r.getDescription());
if (r.getPublisher() != null && compareTrust(this, r) < 0) publisher = r.getPublisher();
if (r.getEmbargoenddate() != null && compareTrust(this, r) < 0)
embargoenddate = r.getEmbargoenddate();
source = mergeLists(source, r.getSource());
fulltext = mergeLists(fulltext, r.getFulltext());
format = mergeLists(format, r.getFormat());
contributor = mergeLists(contributor, r.getContributor());
if (r.getResourcetype() != null) resourcetype = r.getResourcetype();
coverage = mergeLists(coverage, r.getCoverage());
context = mergeLists(context, r.getContext());
externalReference = mergeLists(externalReference, r.getExternalReference());
}
private List<Field<String>> longestLists(List<Field<String>> a, List<Field<String>> b) {
if (a == null || b == null) return a == null ? b : a;
if (a.size() == b.size()) {
int msa =
a.stream()
.filter(i -> i.getValue() != null)
.map(i -> i.getValue().length())
.max(Comparator.naturalOrder())
.orElse(0);
int msb =
b.stream()
.filter(i -> i.getValue() != null)
.map(i -> i.getValue().length())
.max(Comparator.naturalOrder())
.orElse(0);
return msa > msb ? a : b;
}
return a.size() > b.size() ? a : b;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
Result result = (Result) o;
return Objects.equals(author, result.author)
&& Objects.equals(resulttype, result.resulttype)
&& Objects.equals(language, result.language)
&& Objects.equals(country, result.country)
&& Objects.equals(subject, result.subject)
&& Objects.equals(title, result.title)
&& Objects.equals(relevantdate, result.relevantdate)
&& Objects.equals(description, result.description)
&& Objects.equals(dateofacceptance, result.dateofacceptance)
&& Objects.equals(publisher, result.publisher)
&& Objects.equals(embargoenddate, result.embargoenddate)
&& Objects.equals(source, result.source)
&& Objects.equals(fulltext, result.fulltext)
&& Objects.equals(format, result.format)
&& Objects.equals(contributor, result.contributor)
&& Objects.equals(resourcetype, result.resourcetype)
&& Objects.equals(coverage, result.coverage)
&& Objects.equals(bestaccessright, result.bestaccessright)
&& Objects.equals(context, result.context)
&& Objects.equals(externalReference, result.externalReference)
&& Objects.equals(instance, result.instance);
}
@Override
public int hashCode() {
return Objects.hash(
super.hashCode(),
author,
resulttype,
language,
country,
subject,
title,
relevantdate,
description,
dateofacceptance,
publisher,
embargoenddate,
source,
fulltext,
format,
contributor,
resourcetype,
coverage,
bestaccessright,
context,
externalReference,
instance);
}
public List<Instance> getInstance() {
return instance;
}
public void setInstance(List<Instance> instance) {
this.instance = instance;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Result.class.isAssignableFrom(e.getClass())) {
return;
}
Result r = (Result) e;
instance = mergeLists(instance, r.getInstance());
if (r.getBestaccessright() != null && compareTrust(this, r) < 0)
bestaccessright = r.getBestaccessright();
if (r.getResulttype() != null && compareTrust(this, r) < 0)
resulttype = r.getResulttype();
if (r.getLanguage() != null && compareTrust(this, r) < 0)
language = r.getLanguage();
country = mergeLists(country, r.getCountry());
subject = mergeLists(subject, r.getSubject());
title = mergeLists(title, r.getTitle());
relevantdate = mergeLists(relevantdate, r.getRelevantdate());
description = longestLists(description, r.getDescription());
if (r.getPublisher() != null && compareTrust(this, r) < 0)
publisher = r.getPublisher();
if (r.getEmbargoenddate() != null && compareTrust(this, r) < 0)
embargoenddate = r.getEmbargoenddate();
source = mergeLists(source, r.getSource());
fulltext = mergeLists(fulltext, r.getFulltext());
format = mergeLists(format, r.getFormat());
contributor = mergeLists(contributor, r.getContributor());
if (r.getResourcetype() != null)
resourcetype = r.getResourcetype();
coverage = mergeLists(coverage, r.getCoverage());
context = mergeLists(context, r.getContext());
externalReference = mergeLists(externalReference, r.getExternalReference());
}
private List<Field<String>> longestLists(List<Field<String>> a, List<Field<String>> b) {
if (a == null || b == null)
return a == null ? b : a;
if (a.size() == b.size()) {
int msa = a
.stream()
.filter(i -> i.getValue() != null)
.map(i -> i.getValue().length())
.max(Comparator.naturalOrder())
.orElse(0);
int msb = b
.stream()
.filter(i -> i.getValue() != null)
.map(i -> i.getValue().length())
.max(Comparator.naturalOrder())
.orElse(0);
return msa > msb ? a : b;
}
return a.size() > b.size() ? a : b;
}
}

120
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Software.java
View File

@ -1,96 +1,78 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Objects;
import eu.dnetlib.dhp.schema.common.ModelConstants;
public class Software extends Result implements Serializable {
private List<Field<String>> documentationUrl;
private List<Field<String>> documentationUrl;
private List<StructuredProperty> license;
private List<StructuredProperty> license;
private Field<String> codeRepositoryUrl;
private Field<String> codeRepositoryUrl;
private Qualifier programmingLanguage;
private Qualifier programmingLanguage;
public List<Field<String>> getDocumentationUrl() {
return documentationUrl;
}
public Software() {
setResulttype(ModelConstants.SOFTWARE_DEFAULT_RESULTTYPE);
}
public void setDocumentationUrl(List<Field<String>> documentationUrl) {
this.documentationUrl = documentationUrl;
}
public List<Field<String>> getDocumentationUrl() {
return documentationUrl;
}
public List<StructuredProperty> getLicense() {
return license;
}
public void setDocumentationUrl(List<Field<String>> documentationUrl) {
this.documentationUrl = documentationUrl;
}
public void setLicense(List<StructuredProperty> license) {
this.license = license;
}
public List<StructuredProperty> getLicense() {
return license;
}
public Field<String> getCodeRepositoryUrl() {
return codeRepositoryUrl;
}
public void setLicense(List<StructuredProperty> license) {
this.license = license;
}
public void setCodeRepositoryUrl(Field<String> codeRepositoryUrl) {
this.codeRepositoryUrl = codeRepositoryUrl;
}
public Field<String> getCodeRepositoryUrl() {
return codeRepositoryUrl;
}
public Qualifier getProgrammingLanguage() {
return programmingLanguage;
}
public void setCodeRepositoryUrl(Field<String> codeRepositoryUrl) {
this.codeRepositoryUrl = codeRepositoryUrl;
}
public void setProgrammingLanguage(Qualifier programmingLanguage) {
this.programmingLanguage = programmingLanguage;
}
public Qualifier getProgrammingLanguage() {
return programmingLanguage;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
public void setProgrammingLanguage(Qualifier programmingLanguage) {
this.programmingLanguage = programmingLanguage;
}
if (!Software.class.isAssignableFrom(e.getClass())) {
return;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
final Software s = (Software) e;
documentationUrl = mergeLists(documentationUrl, s.getDocumentationUrl());
if (!Software.class.isAssignableFrom(e.getClass())) {
return;
}
license = mergeLists(license, s.getLicense());
final Software s = (Software) e;
documentationUrl = mergeLists(documentationUrl, s.getDocumentationUrl());
codeRepositoryUrl =
s.getCodeRepositoryUrl() != null && compareTrust(this, s) < 0
? s.getCodeRepositoryUrl()
: codeRepositoryUrl;
license = mergeLists(license, s.getLicense());
programmingLanguage =
s.getProgrammingLanguage() != null && compareTrust(this, s) < 0
? s.getProgrammingLanguage()
: programmingLanguage;
codeRepositoryUrl = s.getCodeRepositoryUrl() != null && compareTrust(this, s) < 0
? s.getCodeRepositoryUrl()
: codeRepositoryUrl;
mergeOAFDataInfo(e);
}
programmingLanguage = s.getProgrammingLanguage() != null && compareTrust(this, s) < 0
? s.getProgrammingLanguage()
: programmingLanguage;
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
Software software = (Software) o;
return Objects.equals(documentationUrl, software.documentationUrl)
&& Objects.equals(license, software.license)
&& Objects.equals(codeRepositoryUrl, software.codeRepositoryUrl)
&& Objects.equals(programmingLanguage, software.programmingLanguage);
}
@Override
public int hashCode() {
return Objects.hash(
super.hashCode(),
documentationUrl,
license,
codeRepositoryUrl,
programmingLanguage);
}
mergeOAFDataInfo(e);
}
}

76
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/StructuredProperty.java
View File

@ -1,56 +1,60 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
public class StructuredProperty implements Serializable {
private String value;
private String value;
private Qualifier qualifier;
private Qualifier qualifier;
private DataInfo dataInfo;
private DataInfo dataInfo;
public String getValue() {
return value;
}
public String getValue() {
return value;
}
public void setValue(String value) {
this.value = value;
}
public void setValue(String value) {
this.value = value;
}
public Qualifier getQualifier() {
return qualifier;
}
public Qualifier getQualifier() {
return qualifier;
}
public void setQualifier(Qualifier qualifier) {
this.qualifier = qualifier;
}
public void setQualifier(Qualifier qualifier) {
this.qualifier = qualifier;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
public String toComparableString() {
return value != null ? value.toLowerCase() : "";
}
public String toComparableString() {
return value != null ? value.toLowerCase() : "";
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj) return true;
if (obj == null) return false;
if (getClass() != obj.getClass()) return false;
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
StructuredProperty other = (StructuredProperty) obj;
StructuredProperty other = (StructuredProperty) obj;
return toComparableString().equals(other.toComparableString());
}
return toComparableString().equals(other.toComparableString());
}
}

132
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/scholexplorer/DLIDataset.java
View File

@ -1,91 +1,89 @@
package eu.dnetlib.dhp.schema.scholexplorer;
import eu.dnetlib.dhp.schema.oaf.Dataset;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import org.apache.commons.lang3.StringUtils;
import eu.dnetlib.dhp.schema.oaf.Dataset;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
public class DLIDataset extends Dataset {
private String originalObjIdentifier;
private String originalObjIdentifier;
private List<ProvenaceInfo> dlicollectedfrom;
private List<ProvenaceInfo> dlicollectedfrom;
private String completionStatus;
private String completionStatus;
public String getCompletionStatus() {
return completionStatus;
}
public String getCompletionStatus() {
return completionStatus;
}
public void setCompletionStatus(String completionStatus) {
this.completionStatus = completionStatus;
}
public void setCompletionStatus(String completionStatus) {
this.completionStatus = completionStatus;
}
public List<ProvenaceInfo> getDlicollectedfrom() {
return dlicollectedfrom;
}
public List<ProvenaceInfo> getDlicollectedfrom() {
return dlicollectedfrom;
}
public void setDlicollectedfrom(List<ProvenaceInfo> dlicollectedfrom) {
this.dlicollectedfrom = dlicollectedfrom;
}
public void setDlicollectedfrom(List<ProvenaceInfo> dlicollectedfrom) {
this.dlicollectedfrom = dlicollectedfrom;
}
public String getOriginalObjIdentifier() {
return originalObjIdentifier;
}
public String getOriginalObjIdentifier() {
return originalObjIdentifier;
}
public void setOriginalObjIdentifier(String originalObjIdentifier) {
this.originalObjIdentifier = originalObjIdentifier;
}
public void setOriginalObjIdentifier(String originalObjIdentifier) {
this.originalObjIdentifier = originalObjIdentifier;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
DLIDataset p = (DLIDataset) e;
if (StringUtils.isBlank(completionStatus) && StringUtils.isNotBlank(p.completionStatus))
completionStatus = p.completionStatus;
if ("complete".equalsIgnoreCase(p.completionStatus)) completionStatus = "complete";
dlicollectedfrom = mergeProvenance(dlicollectedfrom, p.getDlicollectedfrom());
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
DLIDataset p = (DLIDataset) e;
if (StringUtils.isBlank(completionStatus) && StringUtils.isNotBlank(p.completionStatus))
completionStatus = p.completionStatus;
if ("complete".equalsIgnoreCase(p.completionStatus))
completionStatus = "complete";
dlicollectedfrom = mergeProvenance(dlicollectedfrom, p.getDlicollectedfrom());
}
private List<ProvenaceInfo> mergeProvenance(
final List<ProvenaceInfo> a, final List<ProvenaceInfo> b) {
Map<String, ProvenaceInfo> result = new HashMap<>();
if (a != null)
a.forEach(
p -> {
if (p != null
&& StringUtils.isNotBlank(p.getId())
&& result.containsKey(p.getId())) {
if ("incomplete"
.equalsIgnoreCase(
result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
private List<ProvenaceInfo> mergeProvenance(
final List<ProvenaceInfo> a, final List<ProvenaceInfo> b) {
Map<String, ProvenaceInfo> result = new HashMap<>();
if (a != null)
a
.forEach(
p -> {
if (p != null && StringUtils.isNotBlank(p.getId()) && result.containsKey(p.getId())) {
if ("incomplete".equalsIgnoreCase(result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
if (b != null)
b.forEach(
p -> {
if (p != null
&& StringUtils.isNotBlank(p.getId())
&& result.containsKey(p.getId())) {
if ("incomplete"
.equalsIgnoreCase(
result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
if (b != null)
b
.forEach(
p -> {
if (p != null && StringUtils.isNotBlank(p.getId()) && result.containsKey(p.getId())) {
if ("incomplete".equalsIgnoreCase(result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
return new ArrayList<>(result.values());
}
return new ArrayList<>(result.values());
}
}

134
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/scholexplorer/DLIPublication.java
View File

@ -1,89 +1,87 @@
package eu.dnetlib.dhp.schema.scholexplorer;
import java.io.Serializable;
import java.util.*;
import org.apache.commons.lang3.StringUtils;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import eu.dnetlib.dhp.schema.oaf.Publication;
import java.io.Serializable;
import java.util.*;
import org.apache.commons.lang3.StringUtils;
public class DLIPublication extends Publication implements Serializable {
private String originalObjIdentifier;
private String originalObjIdentifier;
private List<ProvenaceInfo> dlicollectedfrom;
private List<ProvenaceInfo> dlicollectedfrom;
private String completionStatus;
private String completionStatus;
public String getCompletionStatus() {
return completionStatus;
}
public String getCompletionStatus() {
return completionStatus;
}
public void setCompletionStatus(String completionStatus) {
this.completionStatus = completionStatus;
}
public void setCompletionStatus(String completionStatus) {
this.completionStatus = completionStatus;
}
public List<ProvenaceInfo> getDlicollectedfrom() {
return dlicollectedfrom;
}
public List<ProvenaceInfo> getDlicollectedfrom() {
return dlicollectedfrom;
}
public void setDlicollectedfrom(List<ProvenaceInfo> dlicollectedfrom) {
this.dlicollectedfrom = dlicollectedfrom;
}
public void setDlicollectedfrom(List<ProvenaceInfo> dlicollectedfrom) {
this.dlicollectedfrom = dlicollectedfrom;
}
public String getOriginalObjIdentifier() {
return originalObjIdentifier;
}
public String getOriginalObjIdentifier() {
return originalObjIdentifier;
}
public void setOriginalObjIdentifier(String originalObjIdentifier) {
this.originalObjIdentifier = originalObjIdentifier;
}
public void setOriginalObjIdentifier(String originalObjIdentifier) {
this.originalObjIdentifier = originalObjIdentifier;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
DLIPublication p = (DLIPublication) e;
if (StringUtils.isBlank(completionStatus) && StringUtils.isNotBlank(p.completionStatus))
completionStatus = p.completionStatus;
if ("complete".equalsIgnoreCase(p.completionStatus)) completionStatus = "complete";
dlicollectedfrom = mergeProvenance(dlicollectedfrom, p.getDlicollectedfrom());
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
DLIPublication p = (DLIPublication) e;
if (StringUtils.isBlank(completionStatus) && StringUtils.isNotBlank(p.completionStatus))
completionStatus = p.completionStatus;
if ("complete".equalsIgnoreCase(p.completionStatus))
completionStatus = "complete";
dlicollectedfrom = mergeProvenance(dlicollectedfrom, p.getDlicollectedfrom());
}
private List<ProvenaceInfo> mergeProvenance(
final List<ProvenaceInfo> a, final List<ProvenaceInfo> b) {
Map<String, ProvenaceInfo> result = new HashMap<>();
if (a != null)
a.forEach(
p -> {
if (p != null
&& StringUtils.isNotBlank(p.getId())
&& result.containsKey(p.getId())) {
if ("incomplete"
.equalsIgnoreCase(
result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
private List<ProvenaceInfo> mergeProvenance(
final List<ProvenaceInfo> a, final List<ProvenaceInfo> b) {
Map<String, ProvenaceInfo> result = new HashMap<>();
if (a != null)
a
.forEach(
p -> {
if (p != null && StringUtils.isNotBlank(p.getId()) && result.containsKey(p.getId())) {
if ("incomplete".equalsIgnoreCase(result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
if (b != null)
b.forEach(
p -> {
if (p != null
&& StringUtils.isNotBlank(p.getId())
&& result.containsKey(p.getId())) {
if ("incomplete"
.equalsIgnoreCase(
result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
if (b != null)
b
.forEach(
p -> {
if (p != null && StringUtils.isNotBlank(p.getId()) && result.containsKey(p.getId())) {
if ("incomplete".equalsIgnoreCase(result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
return new ArrayList<>(result.values());
}
return new ArrayList<>(result.values());
}
}

15
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/scholexplorer/DLIRelation.java
View File

@ -1,15 +1,16 @@
package eu.dnetlib.dhp.schema.scholexplorer;
import eu.dnetlib.dhp.schema.oaf.Relation;
public class DLIRelation extends Relation {
private String dateOfCollection;
private String dateOfCollection;
public String getDateOfCollection() {
return dateOfCollection;
}
public String getDateOfCollection() {
return dateOfCollection;
}
public void setDateOfCollection(String dateOfCollection) {
this.dateOfCollection = dateOfCollection;
}
public void setDateOfCollection(String dateOfCollection) {
this.dateOfCollection = dateOfCollection;
}
}

164
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/scholexplorer/DLIUnknown.java
View File

@ -1,117 +1,115 @@
package eu.dnetlib.dhp.schema.scholexplorer;
import eu.dnetlib.dhp.schema.oaf.Oaf;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import org.apache.commons.lang3.StringUtils;
import eu.dnetlib.dhp.schema.oaf.Oaf;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class DLIUnknown extends Oaf implements Serializable {
private String id;
private String id;
private List<StructuredProperty> pid;
private List<StructuredProperty> pid;
private String dateofcollection;
private String dateofcollection;
private String dateoftransformation;
private String dateoftransformation;
private List<ProvenaceInfo> dlicollectedfrom;
private List<ProvenaceInfo> dlicollectedfrom;
private String completionStatus = "incomplete";
private String completionStatus = "incomplete";
public String getCompletionStatus() {
return completionStatus;
}
public String getCompletionStatus() {
return completionStatus;
}
public void setCompletionStatus(String completionStatus) {
this.completionStatus = completionStatus;
}
public void setCompletionStatus(String completionStatus) {
this.completionStatus = completionStatus;
}
public List<ProvenaceInfo> getDlicollectedfrom() {
return dlicollectedfrom;
}
public List<ProvenaceInfo> getDlicollectedfrom() {
return dlicollectedfrom;
}
public void setDlicollectedfrom(List<ProvenaceInfo> dlicollectedfrom) {
this.dlicollectedfrom = dlicollectedfrom;
}
public void setDlicollectedfrom(List<ProvenaceInfo> dlicollectedfrom) {
this.dlicollectedfrom = dlicollectedfrom;
}
public String getId() {
return id;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public void setId(String id) {
this.id = id;
}
public List<StructuredProperty> getPid() {
return pid;
}
public List<StructuredProperty> getPid() {
return pid;
}
public void setPid(List<StructuredProperty> pid) {
this.pid = pid;
}
public void setPid(List<StructuredProperty> pid) {
this.pid = pid;
}
public String getDateofcollection() {
return dateofcollection;
}
public String getDateofcollection() {
return dateofcollection;
}
public void setDateofcollection(String dateofcollection) {
this.dateofcollection = dateofcollection;
}
public void setDateofcollection(String dateofcollection) {
this.dateofcollection = dateofcollection;
}
public String getDateoftransformation() {
return dateoftransformation;
}
public String getDateoftransformation() {
return dateoftransformation;
}
public void setDateoftransformation(String dateoftransformation) {
this.dateoftransformation = dateoftransformation;
}
public void setDateoftransformation(String dateoftransformation) {
this.dateoftransformation = dateoftransformation;
}
public void mergeFrom(DLIUnknown p) {
if ("complete".equalsIgnoreCase(p.completionStatus)) completionStatus = "complete";
dlicollectedfrom = mergeProvenance(dlicollectedfrom, p.getDlicollectedfrom());
}
public void mergeFrom(DLIUnknown p) {
if ("complete".equalsIgnoreCase(p.completionStatus))
completionStatus = "complete";
dlicollectedfrom = mergeProvenance(dlicollectedfrom, p.getDlicollectedfrom());
}
private List<ProvenaceInfo> mergeProvenance(
final List<ProvenaceInfo> a, final List<ProvenaceInfo> b) {
Map<String, ProvenaceInfo> result = new HashMap<>();
if (a != null)
a.forEach(
p -> {
if (p != null
&& StringUtils.isNotBlank(p.getId())
&& result.containsKey(p.getId())) {
if ("incomplete"
.equalsIgnoreCase(
result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
private List<ProvenaceInfo> mergeProvenance(
final List<ProvenaceInfo> a, final List<ProvenaceInfo> b) {
Map<String, ProvenaceInfo> result = new HashMap<>();
if (a != null)
a
.forEach(
p -> {
if (p != null && StringUtils.isNotBlank(p.getId()) && result.containsKey(p.getId())) {
if ("incomplete".equalsIgnoreCase(result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
if (b != null)
b.forEach(
p -> {
if (p != null
&& StringUtils.isNotBlank(p.getId())
&& result.containsKey(p.getId())) {
if ("incomplete"
.equalsIgnoreCase(
result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
if (b != null)
b
.forEach(
p -> {
if (p != null && StringUtils.isNotBlank(p.getId()) && result.containsKey(p.getId())) {
if ("incomplete".equalsIgnoreCase(result.get(p.getId()).getCompletionStatus())
&& StringUtils.isNotBlank(p.getCompletionStatus())) {
result.put(p.getId(), p);
}
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
} else if (p != null && p.getId() != null && !result.containsKey(p.getId()))
result.put(p.getId(), p);
});
return new ArrayList<>(result.values());
}
return new ArrayList<>(result.values());
}
}

57
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/scholexplorer/ProvenaceInfo.java
View File

@ -1,46 +1,47 @@
package eu.dnetlib.dhp.schema.scholexplorer;
import java.io.Serializable;
public class ProvenaceInfo implements Serializable {
private String id;
private String id;
private String name;
private String name;
private String completionStatus;
private String completionStatus;
private String collectionMode = "collected";
private String collectionMode = "collected";
public String getId() {
return id;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public void setId(String id) {
this.id = id;
}
public String getName() {
return name;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public void setName(String name) {
this.name = name;
}
public String getCompletionStatus() {
return completionStatus;
}
public String getCompletionStatus() {
return completionStatus;
}
public void setCompletionStatus(String completionStatus) {
this.completionStatus = completionStatus;
}
public void setCompletionStatus(String completionStatus) {
this.completionStatus = completionStatus;
}
public String getCollectionMode() {
return collectionMode;
}
public String getCollectionMode() {
return collectionMode;
}
public void setCollectionMode(String collectionMode) {
this.collectionMode = collectionMode;
}
public void setCollectionMode(String collectionMode) {
this.collectionMode = collectionMode;
}
}

40
dhp-schemas/src/test/java/eu/dnetlib/dhp/schema/action/AtomicActionTest.java
View File

@ -1,36 +1,40 @@
package eu.dnetlib.dhp.schema.action;
import static org.junit.jupiter.api.Assertions.*;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Relation;
import java.io.IOException;
import org.apache.commons.lang3.StringUtils;
import org.junit.jupiter.api.Test;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Relation;
/** @author claudio.atzori */
public class AtomicActionTest {
@Test
public void serializationTest() throws IOException {
@Test
public void serializationTest() throws IOException {
Relation rel = new Relation();
rel.setSource("1");
rel.setTarget("2");
rel.setRelType("resultResult");
rel.setSubRelType("dedup");
rel.setRelClass("merges");
Relation rel = new Relation();
rel.setSource("1");
rel.setTarget("2");
rel.setRelType("resultResult");
rel.setSubRelType("dedup");
rel.setRelClass("merges");
AtomicAction aa1 = new AtomicAction(Relation.class, rel);
AtomicAction aa1 = new AtomicAction(Relation.class, rel);
final ObjectMapper mapper = new ObjectMapper();
String json = mapper.writeValueAsString(aa1);
final ObjectMapper mapper = new ObjectMapper();
String json = mapper.writeValueAsString(aa1);
assertTrue(StringUtils.isNotBlank(json));
assertTrue(StringUtils.isNotBlank(json));
AtomicAction aa2 = mapper.readValue(json, AtomicAction.class);
AtomicAction aa2 = mapper.readValue(json, AtomicAction.class);
assertEquals(aa1.getClazz(), aa2.getClazz());
assertEquals(aa1.getPayload(), aa2.getPayload());
}
assertEquals(aa1.getClazz(), aa2.getClazz());
assertEquals(aa1.getPayload(), aa2.getPayload());
}
}

42
dhp-schemas/src/test/java/eu/dnetlib/dhp/schema/common/ModelSupportTest.java
View File

@ -1,35 +1,37 @@
package eu.dnetlib.dhp.schema.common;
import static org.junit.jupiter.api.Assertions.assertFalse;
import static org.junit.jupiter.api.Assertions.assertTrue;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.dhp.schema.oaf.Result;
import org.junit.jupiter.api.Nested;
import org.junit.jupiter.api.Test;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.dhp.schema.oaf.Result;
public class ModelSupportTest {
@Nested
class IsSubClass {
@Nested
class IsSubClass {
@Test
public void shouldReturnFalseWhenSubClassDoesNotExtendSuperClass() {
// when
Boolean result = ModelSupport.isSubClass(Relation.class, OafEntity.class);
@Test
public void shouldReturnFalseWhenSubClassDoesNotExtendSuperClass() {
// when
Boolean result = ModelSupport.isSubClass(Relation.class, OafEntity.class);
// then
assertFalse(result);
}
// then
assertFalse(result);
}
@Test
public void shouldReturnTrueWhenSubClassExtendsSuperClass() {
// when
Boolean result = ModelSupport.isSubClass(Result.class, OafEntity.class);
@Test
public void shouldReturnTrueWhenSubClassExtendsSuperClass() {
// when
Boolean result = ModelSupport.isSubClass(Result.class, OafEntity.class);
// then
assertTrue(result);
}
}
// then
assertTrue(result);
}
}
}

108
dhp-schemas/src/test/java/eu/dnetlib/dhp/schema/oaf/MergeTest.java
View File

@ -1,86 +1,88 @@
package eu.dnetlib.dhp.schema.oaf;
import static org.junit.jupiter.api.Assertions.*;
import java.util.Arrays;
import java.util.List;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
public class MergeTest {
OafEntity oaf;
OafEntity oaf;
@BeforeEach
public void setUp() {
oaf = new Publication();
}
@BeforeEach
public void setUp() {
oaf = new Publication();
}
@Test
public void mergeListsTest() {
@Test
public void mergeListsTest() {
// string list merge test
List<String> a = Arrays.asList("a", "b", "c", "e");
List<String> b = Arrays.asList("a", "b", "c", "d");
List<String> c = null;
// string list merge test
List<String> a = Arrays.asList("a", "b", "c", "e");
List<String> b = Arrays.asList("a", "b", "c", "d");
List<String> c = null;
System.out.println("merge result 1 = " + oaf.mergeLists(a, b));
System.out.println("merge result 1 = " + oaf.mergeLists(a, b));
System.out.println("merge result 2 = " + oaf.mergeLists(a, c));
System.out.println("merge result 2 = " + oaf.mergeLists(a, c));
System.out.println("merge result 3 = " + oaf.mergeLists(c, c));
}
System.out.println("merge result 3 = " + oaf.mergeLists(c, c));
}
@Test
public void mergePublicationCollectedFromTest() {
@Test
public void mergePublicationCollectedFromTest() {
Publication a = new Publication();
Publication b = new Publication();
Publication a = new Publication();
Publication b = new Publication();
a.setCollectedfrom(Arrays.asList(setKV("a", "open"), setKV("b", "closed")));
b.setCollectedfrom(Arrays.asList(setKV("A", "open"), setKV("b", "Open")));
a.setCollectedfrom(Arrays.asList(setKV("a", "open"), setKV("b", "closed")));
b.setCollectedfrom(Arrays.asList(setKV("A", "open"), setKV("b", "Open")));
a.mergeFrom(b);
a.mergeFrom(b);
assertNotNull(a.getCollectedfrom());
assertEquals(3, a.getCollectedfrom().size());
}
assertNotNull(a.getCollectedfrom());
assertEquals(3, a.getCollectedfrom().size());
}
@Test
public void mergePublicationSubjectTest() {
@Test
public void mergePublicationSubjectTest() {
Publication a = new Publication();
Publication b = new Publication();
Publication a = new Publication();
Publication b = new Publication();
a.setSubject(Arrays.asList(setSP("a", "open", "classe"), setSP("b", "open", "classe")));
b.setSubject(Arrays.asList(setSP("A", "open", "classe"), setSP("c", "open", "classe")));
a.setSubject(Arrays.asList(setSP("a", "open", "classe"), setSP("b", "open", "classe")));
b.setSubject(Arrays.asList(setSP("A", "open", "classe"), setSP("c", "open", "classe")));
a.mergeFrom(b);
a.mergeFrom(b);
assertNotNull(a.getSubject());
assertEquals(3, a.getSubject().size());
}
assertNotNull(a.getSubject());
assertEquals(3, a.getSubject().size());
}
private KeyValue setKV(final String key, final String value) {
private KeyValue setKV(final String key, final String value) {
KeyValue k = new KeyValue();
KeyValue k = new KeyValue();
k.setKey(key);
k.setValue(value);
k.setKey(key);
k.setValue(value);
return k;
}
return k;
}
private StructuredProperty setSP(
final String value, final String schema, final String classname) {
StructuredProperty s = new StructuredProperty();
s.setValue(value);
Qualifier q = new Qualifier();
q.setClassname(classname);
q.setClassid(classname);
q.setSchemename(schema);
q.setSchemeid(schema);
s.setQualifier(q);
return s;
}
private StructuredProperty setSP(
final String value, final String schema, final String classname) {
StructuredProperty s = new StructuredProperty();
s.setValue(value);
Qualifier q = new Qualifier();
q.setClassname(classname);
q.setClassid(classname);
q.setSchemename(schema);
q.setSchemeid(schema);
s.setQualifier(q);
return s;
}
}

119
dhp-schemas/src/test/java/eu/dnetlib/dhp/schema/scholexplorer/DLItest.java
View File

@ -1,76 +1,83 @@
package eu.dnetlib.dhp.schema.scholexplorer;
import java.io.IOException;
import java.util.Arrays;
import java.util.Collections;
import org.junit.jupiter.api.Test;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.fasterxml.jackson.databind.SerializationFeature;
import eu.dnetlib.dhp.schema.oaf.Qualifier;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
import java.io.IOException;
import java.util.Arrays;
import java.util.Collections;
import org.junit.jupiter.api.Test;
public class DLItest {
@Test
public void testMergePublication() throws JsonProcessingException {
DLIPublication a1 = new DLIPublication();
a1.setPid(Arrays.asList(createSP("123456", "pdb", "dnet:pid_types")));
a1.setTitle(Collections.singletonList(createSP("Un Titolo", "title", "dnetTitle")));
a1.setDlicollectedfrom(Arrays.asList(createCollectedFrom("znd", "Zenodo", "complete")));
a1.setCompletionStatus("complete");
@Test
public void testMergePublication() throws JsonProcessingException {
DLIPublication a1 = new DLIPublication();
a1.setPid(Arrays.asList(createSP("123456", "pdb", "dnet:pid_types")));
a1.setTitle(Collections.singletonList(createSP("Un Titolo", "title", "dnetTitle")));
a1.setDlicollectedfrom(Arrays.asList(createCollectedFrom("znd", "Zenodo", "complete")));
a1.setCompletionStatus("complete");
DLIPublication a = new DLIPublication();
a.setPid(
Arrays.asList(
createSP("10.11", "doi", "dnet:pid_types"),
createSP("123456", "pdb", "dnet:pid_types")));
a.setTitle(Collections.singletonList(createSP("A Title", "title", "dnetTitle")));
a.setDlicollectedfrom(
Arrays.asList(
createCollectedFrom("dct", "datacite", "complete"),
createCollectedFrom("dct", "datacite", "incomplete")));
a.setCompletionStatus("incomplete");
DLIPublication a = new DLIPublication();
a
.setPid(
Arrays
.asList(
createSP("10.11", "doi", "dnet:pid_types"),
createSP("123456", "pdb", "dnet:pid_types")));
a.setTitle(Collections.singletonList(createSP("A Title", "title", "dnetTitle")));
a
.setDlicollectedfrom(
Arrays
.asList(
createCollectedFrom("dct", "datacite", "complete"),
createCollectedFrom("dct", "datacite", "incomplete")));
a.setCompletionStatus("incomplete");
a.mergeFrom(a1);
a.mergeFrom(a1);
ObjectMapper mapper = new ObjectMapper();
System.out.println(mapper.writeValueAsString(a));
}
ObjectMapper mapper = new ObjectMapper();
System.out.println(mapper.writeValueAsString(a));
}
@Test
public void testDeserialization() throws IOException {
@Test
public void testDeserialization() throws IOException {
final String json =
"{\"dataInfo\":{\"invisible\":false,\"inferred\":null,\"deletedbyinference\":false,\"trust\":\"0.9\",\"inferenceprovenance\":null,\"provenanceaction\":null},\"lastupdatetimestamp\":null,\"id\":\"60|bd9352547098929a394655ad1a44a479\",\"originalId\":[\"bd9352547098929a394655ad1a44a479\"],\"collectedfrom\":[{\"key\":\"dli_________::datacite\",\"value\":\"Datasets in Datacite\",\"dataInfo\":null,\"blank\":false}],\"pid\":[{\"value\":\"10.7925/DRS1.DUCHAS_5078760\",\"qualifier\":{\"classid\":\"doi\",\"classname\":\"doi\",\"schemeid\":\"dnet:pid_types\",\"schemename\":\"dnet:pid_types\",\"blank\":false},\"dataInfo\":null}],\"dateofcollection\":\"2020-01-09T08:29:31.885Z\",\"dateoftransformation\":null,\"extraInfo\":null,\"oaiprovenance\":null,\"author\":[{\"fullname\":\"Cathail, S. Ó\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"Donnell, Breda Mc\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"Ireland. Department of Arts, Culture, and the Gaeltacht\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"University College Dublin\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"National Folklore Foundation\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"Cathail, S. Ó\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"Donnell, Breda Mc\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null}],\"resulttype\":null,\"language\":null,\"country\":null,\"subject\":[{\"value\":\"Recreation\",\"qualifier\":{\"classid\":\"dnet:subject\",\"classname\":\"dnet:subject\",\"schemeid\":\"unknown\",\"schemename\":\"unknown\",\"blank\":false},\"dataInfo\":null},{\"value\":\"Entertainments and recreational activities\",\"qualifier\":{\"classid\":\"dnet:subject\",\"classname\":\"dnet:subject\",\"schemeid\":\"unknown\",\"schemename\":\"unknown\",\"blank\":false},\"dataInfo\":null},{\"value\":\"Siamsaíocht agus caitheamh aimsire\",\"qualifier\":{\"classid\":\"dnet:subject\",\"classname\":\"dnet:subject\",\"schemeid\":\"unknown\",\"schemename\":\"unknown\",\"blank\":false},\"dataInfo\":null}],\"title\":[{\"value\":\"Games We Play\",\"qualifier\":null,\"dataInfo\":null}],\"relevantdate\":[{\"value\":\"1938-09-28\",\"qualifier\":{\"classid\":\"date\",\"classname\":\"date\",\"schemeid\":\"dnet::date\",\"schemename\":\"dnet::date\",\"blank\":false},\"dataInfo\":null}],\"description\":[{\"value\":\"Story collected by Breda Mc Donnell, a student at Tenure school (Tinure, Co. Louth) (no informant identified).\",\"dataInfo\":null}],\"dateofacceptance\":null,\"publisher\":{\"value\":\"University College Dublin\",\"dataInfo\":null},\"embargoenddate\":null,\"source\":null,\"fulltext\":null,\"format\":null,\"contributor\":null,\"resourcetype\":null,\"coverage\":null,\"refereed\":null,\"context\":null,\"processingchargeamount\":null,\"processingchargecurrency\":null,\"externalReference\":null,\"instance\":[],\"storagedate\":null,\"device\":null,\"size\":null,\"version\":null,\"lastmetadataupdate\":null,\"metadataversionnumber\":null,\"geolocation\":null,\"dlicollectedfrom\":[{\"id\":\"dli_________::datacite\",\"name\":\"Datasets in Datacite\",\"completionStatus\":\"complete\",\"collectionMode\":\"resolved\"}],\"completionStatus\":\"complete\"}";
final String json = "{\"dataInfo\":{\"invisible\":false,\"inferred\":null,\"deletedbyinference\":false,\"trust\":\"0.9\",\"inferenceprovenance\":null,\"provenanceaction\":null},\"lastupdatetimestamp\":null,\"id\":\"60|bd9352547098929a394655ad1a44a479\",\"originalId\":[\"bd9352547098929a394655ad1a44a479\"],\"collectedfrom\":[{\"key\":\"dli_________::datacite\",\"value\":\"Datasets in Datacite\",\"dataInfo\":null,\"blank\":false}],\"pid\":[{\"value\":\"10.7925/DRS1.DUCHAS_5078760\",\"qualifier\":{\"classid\":\"doi\",\"classname\":\"doi\",\"schemeid\":\"dnet:pid_types\",\"schemename\":\"dnet:pid_types\",\"blank\":false},\"dataInfo\":null}],\"dateofcollection\":\"2020-01-09T08:29:31.885Z\",\"dateoftransformation\":null,\"extraInfo\":null,\"oaiprovenance\":null,\"author\":[{\"fullname\":\"Cathail, S. Ó\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"Donnell, Breda Mc\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"Ireland. Department of Arts, Culture, and the Gaeltacht\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"University College Dublin\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"National Folklore Foundation\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"Cathail, S. Ó\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null},{\"fullname\":\"Donnell, Breda Mc\",\"name\":null,\"surname\":null,\"rank\":null,\"pid\":null,\"affiliation\":null}],\"resulttype\":null,\"language\":null,\"country\":null,\"subject\":[{\"value\":\"Recreation\",\"qualifier\":{\"classid\":\"dnet:subject\",\"classname\":\"dnet:subject\",\"schemeid\":\"unknown\",\"schemename\":\"unknown\",\"blank\":false},\"dataInfo\":null},{\"value\":\"Entertainments and recreational activities\",\"qualifier\":{\"classid\":\"dnet:subject\",\"classname\":\"dnet:subject\",\"schemeid\":\"unknown\",\"schemename\":\"unknown\",\"blank\":false},\"dataInfo\":null},{\"value\":\"Siamsaíocht agus caitheamh aimsire\",\"qualifier\":{\"classid\":\"dnet:subject\",\"classname\":\"dnet:subject\",\"schemeid\":\"unknown\",\"schemename\":\"unknown\",\"blank\":false},\"dataInfo\":null}],\"title\":[{\"value\":\"Games We Play\",\"qualifier\":null,\"dataInfo\":null}],\"relevantdate\":[{\"value\":\"1938-09-28\",\"qualifier\":{\"classid\":\"date\",\"classname\":\"date\",\"schemeid\":\"dnet::date\",\"schemename\":\"dnet::date\",\"blank\":false},\"dataInfo\":null}],\"description\":[{\"value\":\"Story collected by Breda Mc Donnell, a student at Tenure school (Tinure, Co. Louth) (no informant identified).\",\"dataInfo\":null}],\"dateofacceptance\":null,\"publisher\":{\"value\":\"University College Dublin\",\"dataInfo\":null},\"embargoenddate\":null,\"source\":null,\"fulltext\":null,\"format\":null,\"contributor\":null,\"resourcetype\":null,\"coverage\":null,\"refereed\":null,\"context\":null,\"processingchargeamount\":null,\"processingchargecurrency\":null,\"externalReference\":null,\"instance\":[],\"storagedate\":null,\"device\":null,\"size\":null,\"version\":null,\"lastmetadataupdate\":null,\"metadataversionnumber\":null,\"geolocation\":null,\"dlicollectedfrom\":[{\"id\":\"dli_________::datacite\",\"name\":\"Datasets in Datacite\",\"completionStatus\":\"complete\",\"collectionMode\":\"resolved\"}],\"completionStatus\":\"complete\"}";
ObjectMapper mapper = new ObjectMapper();
mapper.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
DLIDataset dliDataset = mapper.readValue(json, DLIDataset.class);
mapper.enable(SerializationFeature.INDENT_OUTPUT);
System.out.println(mapper.writeValueAsString(dliDataset));
}
ObjectMapper mapper = new ObjectMapper();
mapper.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
DLIDataset dliDataset = mapper.readValue(json, DLIDataset.class);
mapper.enable(SerializationFeature.INDENT_OUTPUT);
System.out.println(mapper.writeValueAsString(dliDataset));
}
private ProvenaceInfo createCollectedFrom(
final String id, final String name, final String completionStatus) {
ProvenaceInfo p = new ProvenaceInfo();
p.setId(id);
p.setName(name);
p.setCompletionStatus(completionStatus);
return p;
}
private ProvenaceInfo createCollectedFrom(
final String id, final String name, final String completionStatus) {
ProvenaceInfo p = new ProvenaceInfo();
p.setId(id);
p.setName(name);
p.setCompletionStatus(completionStatus);
return p;
}
private StructuredProperty createSP(
final String value, final String className, final String schemeName) {
StructuredProperty p = new StructuredProperty();
p.setValue(value);
Qualifier schema = new Qualifier();
schema.setClassname(className);
schema.setClassid(className);
schema.setSchemename(schemeName);
schema.setSchemeid(schemeName);
p.setQualifier(schema);
return p;
}
private StructuredProperty createSP(
final String value, final String className, final String schemeName) {
StructuredProperty p = new StructuredProperty();
p.setValue(value);
Qualifier schema = new Qualifier();
schema.setClassname(className);
schema.setClassid(className);
schema.setSchemename(schemeName);
schema.setSchemeid(schemeName);
p.setQualifier(schema);
return p;
}
}

219
dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/ISClient.java
View File

@ -1,8 +1,23 @@
package eu.dnetlib.dhp.actionmanager;
import java.io.Serializable;
import java.io.StringReader;
import java.util.ArrayList;
import java.util.List;
import java.util.NoSuchElementException;
import java.util.stream.Collectors;
import org.dom4j.Document;
import org.dom4j.Element;
import org.dom4j.io.SAXReader;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.google.common.base.Splitter;
import com.google.common.collect.Iterables;
import com.google.common.collect.Lists;
import eu.dnetlib.actionmanager.rmi.ActionManagerException;
import eu.dnetlib.actionmanager.set.ActionManagerSet;
import eu.dnetlib.actionmanager.set.ActionManagerSet.ImpactTypes;
@ -10,130 +25,120 @@ import eu.dnetlib.dhp.actionmanager.partition.PartitionActionSetsByPayloadTypeJo
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import java.io.Serializable;
import java.io.StringReader;
import java.util.ArrayList;
import java.util.List;
import java.util.NoSuchElementException;
import java.util.stream.Collectors;
import org.dom4j.Document;
import org.dom4j.Element;
import org.dom4j.io.SAXReader;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
public class ISClient implements Serializable {
private static final Logger log =
LoggerFactory.getLogger(PartitionActionSetsByPayloadTypeJob.class);
private static final Logger log = LoggerFactory.getLogger(PartitionActionSetsByPayloadTypeJob.class);
private static final String INPUT_ACTION_SET_ID_SEPARATOR = ",";
private static final String INPUT_ACTION_SET_ID_SEPARATOR = ",";
private ISLookUpService isLookup;
private final ISLookUpService isLookup;
public ISClient(String isLookupUrl) {
isLookup = ISLookupClientFactory.getLookUpService(isLookupUrl);
}
public ISClient(String isLookupUrl) {
isLookup = ISLookupClientFactory.getLookUpService(isLookupUrl);
}
public List<String> getLatestRawsetPaths(String setIds) {
public List<String> getLatestRawsetPaths(String setIds) {
List<String> ids =
Lists.newArrayList(
Splitter.on(INPUT_ACTION_SET_ID_SEPARATOR)
.omitEmptyStrings()
.trimResults()
.split(setIds));
List<String> ids = Lists
.newArrayList(
Splitter
.on(INPUT_ACTION_SET_ID_SEPARATOR)
.omitEmptyStrings()
.trimResults()
.split(setIds));
return ids.stream()
.map(id -> getSet(isLookup, id))
.map(as -> as.getPathToLatest())
.collect(Collectors.toCollection(ArrayList::new));
}
return ids
.stream()
.map(id -> getSet(isLookup, id))
.map(as -> as.getPathToLatest())
.collect(Collectors.toCollection(ArrayList::new));
}
private ActionManagerSet getSet(ISLookUpService isLookup, final String setId) {
private ActionManagerSet getSet(ISLookUpService isLookup, final String setId) {
final String q =
"for $x in collection('/db/DRIVER/ActionManagerSetDSResources/ActionManagerSetDSResourceType') "
+ "where $x//SET/@id = '"
+ setId
+ "' return $x";
final String q = "for $x in collection('/db/DRIVER/ActionManagerSetDSResources/ActionManagerSetDSResourceType') "
+ "where $x//SET/@id = '"
+ setId
+ "' return $x";
try {
final String basePath = getBasePathHDFS(isLookup);
final String setProfile = isLookup.getResourceProfileByQuery(q);
return getActionManagerSet(basePath, setProfile);
} catch (ISLookUpException | ActionManagerException e) {
throw new RuntimeException("Error accessing Sets, using query: " + q);
}
}
try {
final String basePath = getBasePathHDFS(isLookup);
final String setProfile = isLookup.getResourceProfileByQuery(q);
return getActionManagerSet(basePath, setProfile);
} catch (ISLookUpException | ActionManagerException e) {
throw new RuntimeException("Error accessing Sets, using query: " + q);
}
}
private ActionManagerSet getActionManagerSet(final String basePath, final String profile)
throws ActionManagerException {
final SAXReader reader = new SAXReader();
final ActionManagerSet set = new ActionManagerSet();
private ActionManagerSet getActionManagerSet(final String basePath, final String profile)
throws ActionManagerException {
final SAXReader reader = new SAXReader();
final ActionManagerSet set = new ActionManagerSet();
try {
final Document doc = reader.read(new StringReader(profile));
try {
final Document doc = reader.read(new StringReader(profile));
set.setId(doc.valueOf("//SET/@id").trim());
set.setName(doc.valueOf("//SET").trim());
set.setImpact(ImpactTypes.valueOf(doc.valueOf("//IMPACT").trim()));
set.setLatest(
doc.valueOf("//RAW_SETS/LATEST/@id"),
doc.valueOf("//RAW_SETS/LATEST/@creationDate"),
doc.valueOf("//RAW_SETS/LATEST/@lastUpdate"));
set.setDirectory(doc.valueOf("//SET/@directory"));
final List expiredNodes = doc.selectNodes("//RAW_SETS/EXPIRED");
if (expiredNodes != null) {
for (int i = 0; i < expiredNodes.size(); i++) {
Element ex = (Element) expiredNodes.get(i);
set.addExpired(
ex.attributeValue("id"),
ex.attributeValue("creationDate"),
ex.attributeValue("lastUpdate"));
}
}
set.setId(doc.valueOf("//SET/@id").trim());
set.setName(doc.valueOf("//SET").trim());
set.setImpact(ImpactTypes.valueOf(doc.valueOf("//IMPACT").trim()));
set
.setLatest(
doc.valueOf("//RAW_SETS/LATEST/@id"),
doc.valueOf("//RAW_SETS/LATEST/@creationDate"),
doc.valueOf("//RAW_SETS/LATEST/@lastUpdate"));
set.setDirectory(doc.valueOf("//SET/@directory"));
final List expiredNodes = doc.selectNodes("//RAW_SETS/EXPIRED");
if (expiredNodes != null) {
for (int i = 0; i < expiredNodes.size(); i++) {
Element ex = (Element) expiredNodes.get(i);
set
.addExpired(
ex.attributeValue("id"),
ex.attributeValue("creationDate"),
ex.attributeValue("lastUpdate"));
}
}
final StringBuilder sb = new StringBuilder();
sb.append(basePath);
sb.append("/");
sb.append(doc.valueOf("//SET/@directory"));
sb.append("/");
sb.append(doc.valueOf("//RAW_SETS/LATEST/@id"));
set.setPathToLatest(sb.toString());
final StringBuilder sb = new StringBuilder();
sb.append(basePath);
sb.append("/");
sb.append(doc.valueOf("//SET/@directory"));
sb.append("/");
sb.append(doc.valueOf("//RAW_SETS/LATEST/@id"));
set.setPathToLatest(sb.toString());
return set;
} catch (Exception e) {
throw new ActionManagerException("Error creating set from profile: " + profile, e);
}
}
return set;
} catch (Exception e) {
throw new ActionManagerException("Error creating set from profile: " + profile, e);
}
}
private String getBasePathHDFS(ISLookUpService isLookup) throws ActionManagerException {
return queryServiceProperty(isLookup, "basePath");
}
private String getBasePathHDFS(ISLookUpService isLookup) throws ActionManagerException {
return queryServiceProperty(isLookup, "basePath");
}
private String queryServiceProperty(ISLookUpService isLookup, final String propertyName)
throws ActionManagerException {
final String q =
"for $x in /RESOURCE_PROFILE[.//RESOURCE_TYPE/@value='ActionManagerServiceResourceType'] return $x//SERVICE_PROPERTIES/PROPERTY[./@ key='"
+ propertyName
+ "']/@value/string()";
log.debug("quering for service property: " + q);
try {
final List<String> value = isLookup.quickSearchProfile(q);
return Iterables.getOnlyElement(value);
} catch (ISLookUpException e) {
String msg = "Error accessing service profile, using query: " + q;
log.error(msg, e);
throw new ActionManagerException(msg, e);
} catch (NoSuchElementException e) {
String msg = "missing service property: " + propertyName;
log.error(msg, e);
throw new ActionManagerException(msg, e);
} catch (IllegalArgumentException e) {
String msg = "found more than one service property: " + propertyName;
log.error(msg, e);
throw new ActionManagerException(msg, e);
}
}
private String queryServiceProperty(ISLookUpService isLookup, final String propertyName)
throws ActionManagerException {
final String q = "for $x in /RESOURCE_PROFILE[.//RESOURCE_TYPE/@value='ActionManagerServiceResourceType'] return $x//SERVICE_PROPERTIES/PROPERTY[./@ key='"
+ propertyName
+ "']/@value/string()";
log.debug("quering for service property: " + q);
try {
final List<String> value = isLookup.quickSearchProfile(q);
return Iterables.getOnlyElement(value);
} catch (ISLookUpException e) {
String msg = "Error accessing service profile, using query: " + q;
log.error(msg, e);
throw new ActionManagerException(msg, e);
} catch (NoSuchElementException e) {
String msg = "missing service property: " + propertyName;
log.error(msg, e);
throw new ActionManagerException(msg, e);
} catch (IllegalArgumentException e) {
String msg = "found more than one service property: " + propertyName;
log.error(msg, e);
throw new ActionManagerException(msg, e);
}
}
}

78
dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/migration/LicenseComparator.java
View File

@ -1,47 +1,69 @@
package eu.dnetlib.dhp.actionmanager.migration;
import eu.dnetlib.data.proto.FieldTypeProtos.Qualifier;
import java.util.Comparator;
import eu.dnetlib.data.proto.FieldTypeProtos.Qualifier;
public class LicenseComparator implements Comparator<Qualifier> {
@Override
public int compare(Qualifier left, Qualifier right) {
@Override
public int compare(Qualifier left, Qualifier right) {
if (left == null && right == null) return 0;
if (left == null) return 1;
if (right == null) return -1;
if (left == null && right == null)
return 0;
if (left == null)
return 1;
if (right == null)
return -1;
String lClass = left.getClassid();
String rClass = right.getClassid();
String lClass = left.getClassid();
String rClass = right.getClassid();
if (lClass.equals(rClass)) return 0;
if (lClass.equals(rClass))
return 0;
if (lClass.equals("OPEN SOURCE")) return -1;
if (rClass.equals("OPEN SOURCE")) return 1;
if (lClass.equals("OPEN SOURCE"))
return -1;
if (rClass.equals("OPEN SOURCE"))
return 1;
if (lClass.equals("OPEN")) return -1;
if (rClass.equals("OPEN")) return 1;
if (lClass.equals("OPEN"))
return -1;
if (rClass.equals("OPEN"))
return 1;
if (lClass.equals("6MONTHS")) return -1;
if (rClass.equals("6MONTHS")) return 1;
if (lClass.equals("6MONTHS"))
return -1;
if (rClass.equals("6MONTHS"))
return 1;
if (lClass.equals("12MONTHS")) return -1;
if (rClass.equals("12MONTHS")) return 1;
if (lClass.equals("12MONTHS"))
return -1;
if (rClass.equals("12MONTHS"))
return 1;
if (lClass.equals("EMBARGO")) return -1;
if (rClass.equals("EMBARGO")) return 1;
if (lClass.equals("EMBARGO"))
return -1;
if (rClass.equals("EMBARGO"))
return 1;
if (lClass.equals("RESTRICTED")) return -1;
if (rClass.equals("RESTRICTED")) return 1;
if (lClass.equals("RESTRICTED"))
return -1;
if (rClass.equals("RESTRICTED"))
return 1;
if (lClass.equals("CLOSED")) return -1;
if (rClass.equals("CLOSED")) return 1;
if (lClass.equals("CLOSED"))
return -1;
if (rClass.equals("CLOSED"))
return 1;
if (lClass.equals("UNKNOWN")) return -1;
if (rClass.equals("UNKNOWN")) return 1;
if (lClass.equals("UNKNOWN"))
return -1;
if (rClass.equals("UNKNOWN"))
return 1;
// Else (but unlikely), lexicographical ordering will do.
return lClass.compareTo(rClass);
}
// Else (but unlikely), lexicographical ordering will do.
return lClass.compareTo(rClass);
}
}

279
dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/migration/MigrateActionSet.java
View File

@ -1,11 +1,6 @@
package eu.dnetlib.dhp.actionmanager.migration;
import com.google.common.base.Splitter;
import com.google.common.collect.Lists;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import java.io.File;
import java.io.FileOutputStream;
import java.io.OutputStream;
@ -14,6 +9,7 @@ import java.util.LinkedList;
import java.util.List;
import java.util.Properties;
import java.util.stream.Collectors;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.hadoop.conf.Configuration;
@ -25,177 +21,174 @@ import org.apache.hadoop.util.ToolRunner;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.google.common.base.Splitter;
import com.google.common.collect.Lists;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
public class MigrateActionSet {
private static final Logger log = LoggerFactory.getLogger(MigrateActionSet.class);
private static final Logger log = LoggerFactory.getLogger(MigrateActionSet.class);
private static final String SEPARATOR = "/";
private static final String TARGET_PATHS = "target_paths";
private static final String RAWSET_PREFIX = "rawset_";
private static final String SEPARATOR = "/";
private static final String TARGET_PATHS = "target_paths";
private static final String RAWSET_PREFIX = "rawset_";
public static void main(String[] args) throws Exception {
final ArgumentApplicationParser parser =
new ArgumentApplicationParser(
IOUtils.toString(
MigrateActionSet.class.getResourceAsStream(
"/eu/dnetlib/dhp/actionmanager/migration/migrate_actionsets_parameters.json")));
parser.parseArgument(args);
public static void main(String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
MigrateActionSet.class
.getResourceAsStream(
"/eu/dnetlib/dhp/actionmanager/migration/migrate_actionsets_parameters.json")));
parser.parseArgument(args);
new MigrateActionSet().run(parser);
}
new MigrateActionSet().run(parser);
}
private void run(ArgumentApplicationParser parser) throws Exception {
private void run(ArgumentApplicationParser parser) throws Exception {
final String isLookupUrl = parser.get("isLookupUrl");
final String sourceNN = parser.get("sourceNameNode");
final String targetNN = parser.get("targetNameNode");
final String workDir = parser.get("workingDirectory");
final Integer distcp_num_maps = Integer.parseInt(parser.get("distcp_num_maps"));
final String isLookupUrl = parser.get("isLookupUrl");
final String sourceNN = parser.get("sourceNameNode");
final String targetNN = parser.get("targetNameNode");
final String workDir = parser.get("workingDirectory");
final Integer distcp_num_maps = Integer.parseInt(parser.get("distcp_num_maps"));
final String distcp_memory_mb = parser.get("distcp_memory_mb");
final String distcp_task_timeout = parser.get("distcp_task_timeout");
final String distcp_memory_mb = parser.get("distcp_memory_mb");
final String distcp_task_timeout = parser.get("distcp_task_timeout");
final String transform_only_s = parser.get("transform_only");
final String transform_only_s = parser.get("transform_only");
log.info("transform only param: {}", transform_only_s);
log.info("transform only param: {}", transform_only_s);
final Boolean transformOnly = Boolean.valueOf(parser.get("transform_only"));
final Boolean transformOnly = Boolean.valueOf(parser.get("transform_only"));
log.info("transform only: {}", transformOnly);
log.info("transform only: {}", transformOnly);
ISLookUpService isLookUp = ISLookupClientFactory.getLookUpService(isLookupUrl);
ISLookUpService isLookUp = ISLookupClientFactory.getLookUpService(isLookupUrl);
Configuration conf =
getConfiguration(distcp_task_timeout, distcp_memory_mb, distcp_num_maps);
FileSystem targetFS = FileSystem.get(conf);
Configuration conf = getConfiguration(distcp_task_timeout, distcp_memory_mb, distcp_num_maps);
FileSystem targetFS = FileSystem.get(conf);
Configuration sourceConf =
getConfiguration(distcp_task_timeout, distcp_memory_mb, distcp_num_maps);
sourceConf.set(FileSystem.FS_DEFAULT_NAME_KEY, sourceNN);
FileSystem sourceFS = FileSystem.get(sourceConf);
Configuration sourceConf = getConfiguration(distcp_task_timeout, distcp_memory_mb, distcp_num_maps);
sourceConf.set(FileSystem.FS_DEFAULT_NAME_KEY, sourceNN);
FileSystem sourceFS = FileSystem.get(sourceConf);
Properties props = new Properties();
Properties props = new Properties();
List<Path> targetPaths = new ArrayList<>();
List<Path> targetPaths = new ArrayList<>();
final List<Path> sourcePaths = getSourcePaths(sourceNN, isLookUp);
log.info(
"paths to process:\n{}",
sourcePaths.stream().map(p -> p.toString()).collect(Collectors.joining("\n")));
for (Path source : sourcePaths) {
final List<Path> sourcePaths = getSourcePaths(sourceNN, isLookUp);
log
.info(
"paths to process:\n{}",
sourcePaths.stream().map(p -> p.toString()).collect(Collectors.joining("\n")));
for (Path source : sourcePaths) {
if (!sourceFS.exists(source)) {
log.warn("skipping unexisting path: {}", source);
} else {
if (!sourceFS.exists(source)) {
log.warn("skipping unexisting path: {}", source);
} else {
LinkedList<String> pathQ =
Lists.newLinkedList(Splitter.on(SEPARATOR).split(source.toUri().getPath()));
LinkedList<String> pathQ = Lists.newLinkedList(Splitter.on(SEPARATOR).split(source.toUri().getPath()));
final String rawSet = pathQ.pollLast();
log.info("got RAWSET: {}", rawSet);
final String rawSet = pathQ.pollLast();
log.info("got RAWSET: {}", rawSet);
if (StringUtils.isNotBlank(rawSet) && rawSet.startsWith(RAWSET_PREFIX)) {
if (StringUtils.isNotBlank(rawSet) && rawSet.startsWith(RAWSET_PREFIX)) {
final String actionSetDirectory = pathQ.pollLast();
final String actionSetDirectory = pathQ.pollLast();
final Path targetPath =
new Path(
targetNN
+ workDir
+ SEPARATOR
+ actionSetDirectory
+ SEPARATOR
+ rawSet);
final Path targetPath = new Path(
targetNN + workDir + SEPARATOR + actionSetDirectory + SEPARATOR + rawSet);
log.info("using TARGET PATH: {}", targetPath);
log.info("using TARGET PATH: {}", targetPath);
if (!transformOnly) {
if (targetFS.exists(targetPath)) {
targetFS.delete(targetPath, true);
}
runDistcp(
distcp_num_maps,
distcp_memory_mb,
distcp_task_timeout,
conf,
source,
targetPath);
}
if (!transformOnly) {
if (targetFS.exists(targetPath)) {
targetFS.delete(targetPath, true);
}
runDistcp(
distcp_num_maps, distcp_memory_mb, distcp_task_timeout, conf, source, targetPath);
}
targetPaths.add(targetPath);
}
}
}
targetPaths.add(targetPath);
}
}
}
props.setProperty(
TARGET_PATHS,
targetPaths.stream().map(p -> p.toString()).collect(Collectors.joining(",")));
File file = new File(System.getProperty("oozie.action.output.properties"));
props
.setProperty(
TARGET_PATHS, targetPaths.stream().map(p -> p.toString()).collect(Collectors.joining(",")));
File file = new File(System.getProperty("oozie.action.output.properties"));
try (OutputStream os = new FileOutputStream(file)) {
props.store(os, "");
}
System.out.println(file.getAbsolutePath());
}
try (OutputStream os = new FileOutputStream(file)) {
props.store(os, "");
}
System.out.println(file.getAbsolutePath());
}
private void runDistcp(
Integer distcp_num_maps,
String distcp_memory_mb,
String distcp_task_timeout,
Configuration conf,
Path source,
Path targetPath)
throws Exception {
private void runDistcp(
Integer distcp_num_maps,
String distcp_memory_mb,
String distcp_task_timeout,
Configuration conf,
Path source,
Path targetPath)
throws Exception {
final DistCpOptions op = new DistCpOptions(source, targetPath);
op.setMaxMaps(distcp_num_maps);
op.preserve(DistCpOptions.FileAttribute.BLOCKSIZE);
op.preserve(DistCpOptions.FileAttribute.REPLICATION);
op.preserve(DistCpOptions.FileAttribute.CHECKSUMTYPE);
final DistCpOptions op = new DistCpOptions(source, targetPath);
op.setMaxMaps(distcp_num_maps);
op.preserve(DistCpOptions.FileAttribute.BLOCKSIZE);
op.preserve(DistCpOptions.FileAttribute.REPLICATION);
op.preserve(DistCpOptions.FileAttribute.CHECKSUMTYPE);
int res =
ToolRunner.run(
new DistCp(conf, op),
new String[] {
"-Dmapred.task.timeout=" + distcp_task_timeout,
"-Dmapreduce.map.memory.mb=" + distcp_memory_mb,
"-pb",
"-m " + distcp_num_maps,
source.toString(),
targetPath.toString()
});
int res = ToolRunner
.run(
new DistCp(conf, op),
new String[] {
"-Dmapred.task.timeout=" + distcp_task_timeout,
"-Dmapreduce.map.memory.mb=" + distcp_memory_mb,
"-pb",
"-m " + distcp_num_maps,
source.toString(),
targetPath.toString()
});
if (res != 0) {
throw new RuntimeException(String.format("distcp exited with code %s", res));
}
}
if (res != 0) {
throw new RuntimeException(String.format("distcp exited with code %s", res));
}
}
private Configuration getConfiguration(
String distcp_task_timeout, String distcp_memory_mb, Integer distcp_num_maps) {
final Configuration conf = new Configuration();
conf.set("dfs.webhdfs.socket.connect-timeout", distcp_task_timeout);
conf.set("dfs.webhdfs.socket.read-timeout", distcp_task_timeout);
conf.set("dfs.http.client.retry.policy.enabled", "true");
conf.set("mapred.task.timeout", distcp_task_timeout);
conf.set("mapreduce.map.memory.mb", distcp_memory_mb);
conf.set("mapred.map.tasks", String.valueOf(distcp_num_maps));
return conf;
}
private Configuration getConfiguration(
String distcp_task_timeout, String distcp_memory_mb, Integer distcp_num_maps) {
final Configuration conf = new Configuration();
conf.set("dfs.webhdfs.socket.connect-timeout", distcp_task_timeout);
conf.set("dfs.webhdfs.socket.read-timeout", distcp_task_timeout);
conf.set("dfs.http.client.retry.policy.enabled", "true");
conf.set("mapred.task.timeout", distcp_task_timeout);
conf.set("mapreduce.map.memory.mb", distcp_memory_mb);
conf.set("mapred.map.tasks", String.valueOf(distcp_num_maps));
return conf;
}
private List<Path> getSourcePaths(String sourceNN, ISLookUpService isLookUp)
throws ISLookUpException {
String XQUERY =
"distinct-values(\n"
+ "let $basePath := collection('/db/DRIVER/ServiceResources/ActionManagerServiceResourceType')//SERVICE_PROPERTIES/PROPERTY[@key = 'basePath']/@value/string()\n"
+ "for $x in collection('/db/DRIVER/ActionManagerSetDSResources/ActionManagerSetDSResourceType') \n"
+ "let $setDir := $x//SET/@directory/string()\n"
+ "let $rawSet := $x//RAW_SETS/LATEST/@id/string()\n"
+ "return concat($basePath, '/', $setDir, '/', $rawSet))";
private List<Path> getSourcePaths(String sourceNN, ISLookUpService isLookUp)
throws ISLookUpException {
String XQUERY = "distinct-values(\n"
+ "let $basePath := collection('/db/DRIVER/ServiceResources/ActionManagerServiceResourceType')//SERVICE_PROPERTIES/PROPERTY[@key = 'basePath']/@value/string()\n"
+ "for $x in collection('/db/DRIVER/ActionManagerSetDSResources/ActionManagerSetDSResourceType') \n"
+ "let $setDir := $x//SET/@directory/string()\n"
+ "let $rawSet := $x//RAW_SETS/LATEST/@id/string()\n"
+ "return concat($basePath, '/', $setDir, '/', $rawSet))";
log.info(String.format("running xquery:\n%s", XQUERY));
return isLookUp.quickSearchProfile(XQUERY).stream()
.map(p -> sourceNN + p)
.map(Path::new)
.collect(Collectors.toList());
}
log.info(String.format("running xquery:\n%s", XQUERY));
return isLookUp
.quickSearchProfile(XQUERY)
.stream()
.map(p -> sourceNN + p)
.map(Path::new)
.collect(Collectors.toList());
}
}

1131
dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/migration/ProtoConverter.java
View File

File diff suppressed because it is too large Load Diff

259
dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/migration/TransformActions.java
View File

@ -1,23 +1,14 @@
package eu.dnetlib.dhp.actionmanager.migration;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.common.base.Splitter;
import com.google.common.collect.Lists;
import com.google.protobuf.InvalidProtocolBufferException;
import eu.dnetlib.data.proto.OafProtos;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.schema.action.AtomicAction;
import eu.dnetlib.dhp.schema.oaf.*;
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import java.io.IOException;
import java.io.Serializable;
import java.util.LinkedList;
import java.util.Objects;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.hadoop.fs.FileSystem;
@ -29,151 +20,153 @@ import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.sql.SparkSession;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.common.base.Splitter;
import com.google.common.collect.Lists;
import com.google.protobuf.InvalidProtocolBufferException;
import eu.dnetlib.data.proto.OafProtos;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.schema.action.AtomicAction;
import eu.dnetlib.dhp.schema.oaf.*;
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import scala.Tuple2;
public class TransformActions implements Serializable {
private static final Logger log = LoggerFactory.getLogger(TransformActions.class);
private static final Logger log = LoggerFactory.getLogger(TransformActions.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static final String SEPARATOR = "/";
private static final String SEPARATOR = "/";
public static void main(String[] args) throws Exception {
final ArgumentApplicationParser parser =
new ArgumentApplicationParser(
IOUtils.toString(
MigrateActionSet.class.getResourceAsStream(
"/eu/dnetlib/dhp/actionmanager/migration/transform_actionsets_parameters.json")));
parser.parseArgument(args);
public static void main(String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
MigrateActionSet.class
.getResourceAsStream(
"/eu/dnetlib/dhp/actionmanager/migration/transform_actionsets_parameters.json")));
parser.parseArgument(args);
Boolean isSparkSessionManaged =
Optional.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
Boolean isSparkSessionManaged = Optional
.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
final String isLookupUrl = parser.get("isLookupUrl");
log.info("isLookupUrl: {}", isLookupUrl);
final String isLookupUrl = parser.get("isLookupUrl");
log.info("isLookupUrl: {}", isLookupUrl);
final String inputPaths = parser.get("inputPaths");
final String inputPaths = parser.get("inputPaths");
if (StringUtils.isBlank(inputPaths)) {
throw new RuntimeException("empty inputPaths");
}
log.info("inputPaths: {}", inputPaths);
if (StringUtils.isBlank(inputPaths)) {
throw new RuntimeException("empty inputPaths");
}
log.info("inputPaths: {}", inputPaths);
final String targetBaseDir = getTargetBaseDir(isLookupUrl);
final String targetBaseDir = getTargetBaseDir(isLookupUrl);
SparkConf conf = new SparkConf();
SparkConf conf = new SparkConf();
runWithSparkSession(
conf,
isSparkSessionManaged,
spark -> transformActions(inputPaths, targetBaseDir, spark));
}
runWithSparkSession(
conf, isSparkSessionManaged, spark -> transformActions(inputPaths, targetBaseDir, spark));
}
private static void transformActions(
String inputPaths, String targetBaseDir, SparkSession spark) throws IOException {
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
final FileSystem fs = FileSystem.get(spark.sparkContext().hadoopConfiguration());
private static void transformActions(String inputPaths, String targetBaseDir, SparkSession spark)
throws IOException {
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
final FileSystem fs = FileSystem.get(spark.sparkContext().hadoopConfiguration());
for (String sourcePath : Lists.newArrayList(Splitter.on(",").split(inputPaths))) {
for (String sourcePath : Lists.newArrayList(Splitter.on(",").split(inputPaths))) {
LinkedList<String> pathQ =
Lists.newLinkedList(Splitter.on(SEPARATOR).split(sourcePath));
LinkedList<String> pathQ = Lists.newLinkedList(Splitter.on(SEPARATOR).split(sourcePath));
final String rawset = pathQ.pollLast();
final String actionSetDirectory = pathQ.pollLast();
final String rawset = pathQ.pollLast();
final String actionSetDirectory = pathQ.pollLast();
final Path targetDirectory =
new Path(targetBaseDir + SEPARATOR + actionSetDirectory + SEPARATOR + rawset);
final Path targetDirectory = new Path(targetBaseDir + SEPARATOR + actionSetDirectory + SEPARATOR + rawset);
if (fs.exists(targetDirectory)) {
log.info("found target directory '{}", targetDirectory);
fs.delete(targetDirectory, true);
log.info("deleted target directory '{}", targetDirectory);
}
if (fs.exists(targetDirectory)) {
log.info("found target directory '{}", targetDirectory);
fs.delete(targetDirectory, true);
log.info("deleted target directory '{}", targetDirectory);
}
log.info("transforming actions from '{}' to '{}'", sourcePath, targetDirectory);
log.info("transforming actions from '{}' to '{}'", sourcePath, targetDirectory);
sc.sequenceFile(sourcePath, Text.class, Text.class)
.map(
a ->
eu.dnetlib.actionmanager.actions.AtomicAction.fromJSON(
a._2().toString()))
.map(TransformActions::doTransform)
.filter(Objects::nonNull)
.mapToPair(
a ->
new Tuple2<>(
a.getClazz().toString(),
OBJECT_MAPPER.writeValueAsString(a)))
.mapToPair(t -> new Tuple2(new Text(t._1()), new Text(t._2())))
.saveAsNewAPIHadoopFile(
targetDirectory.toString(),
Text.class,
Text.class,
SequenceFileOutputFormat.class,
sc.hadoopConfiguration());
}
}
sc
.sequenceFile(sourcePath, Text.class, Text.class)
.map(a -> eu.dnetlib.actionmanager.actions.AtomicAction.fromJSON(a._2().toString()))
.map(TransformActions::doTransform)
.filter(Objects::nonNull)
.mapToPair(
a -> new Tuple2<>(a.getClazz().toString(), OBJECT_MAPPER.writeValueAsString(a)))
.mapToPair(t -> new Tuple2(new Text(t._1()), new Text(t._2())))
.saveAsNewAPIHadoopFile(
targetDirectory.toString(),
Text.class,
Text.class,
SequenceFileOutputFormat.class,
sc.hadoopConfiguration());
}
}
private static AtomicAction doTransform(eu.dnetlib.actionmanager.actions.AtomicAction aa)
throws InvalidProtocolBufferException {
private static AtomicAction doTransform(eu.dnetlib.actionmanager.actions.AtomicAction aa)
throws InvalidProtocolBufferException {
// dedup similarity relations had empty target value, don't migrate them
if (aa.getTargetValue().length == 0) {
return null;
}
final OafProtos.Oaf proto_oaf = OafProtos.Oaf.parseFrom(aa.getTargetValue());
final Oaf oaf = ProtoConverter.convert(proto_oaf);
switch (proto_oaf.getKind()) {
case entity:
switch (proto_oaf.getEntity().getType()) {
case datasource:
return new AtomicAction<>(Datasource.class, (Datasource) oaf);
case organization:
return new AtomicAction<>(Organization.class, (Organization) oaf);
case project:
return new AtomicAction<>(Project.class, (Project) oaf);
case result:
final String resulttypeid =
proto_oaf
.getEntity()
.getResult()
.getMetadata()
.getResulttype()
.getClassid();
switch (resulttypeid) {
case "publication":
return new AtomicAction<>(Publication.class, (Publication) oaf);
case "software":
return new AtomicAction<>(Software.class, (Software) oaf);
case "other":
return new AtomicAction<>(
OtherResearchProduct.class, (OtherResearchProduct) oaf);
case "dataset":
return new AtomicAction<>(Dataset.class, (Dataset) oaf);
default:
// can be an update, where the resulttype is not specified
return new AtomicAction<>(Result.class, (Result) oaf);
}
default:
throw new IllegalArgumentException(
"invalid entity type: " + proto_oaf.getEntity().getType());
}
case relation:
return new AtomicAction<>(Relation.class, (Relation) oaf);
default:
throw new IllegalArgumentException("invalid kind: " + proto_oaf.getKind());
}
}
// dedup similarity relations had empty target value, don't migrate them
if (aa.getTargetValue().length == 0) {
return null;
}
final OafProtos.Oaf proto_oaf = OafProtos.Oaf.parseFrom(aa.getTargetValue());
final Oaf oaf = ProtoConverter.convert(proto_oaf);
switch (proto_oaf.getKind()) {
case entity:
switch (proto_oaf.getEntity().getType()) {
case datasource:
return new AtomicAction<>(Datasource.class, (Datasource) oaf);
case organization:
return new AtomicAction<>(Organization.class, (Organization) oaf);
case project:
return new AtomicAction<>(Project.class, (Project) oaf);
case result:
final String resulttypeid = proto_oaf
.getEntity()
.getResult()
.getMetadata()
.getResulttype()
.getClassid();
switch (resulttypeid) {
case "publication":
return new AtomicAction<>(Publication.class, (Publication) oaf);
case "software":
return new AtomicAction<>(Software.class, (Software) oaf);
case "other":
return new AtomicAction<>(OtherResearchProduct.class, (OtherResearchProduct) oaf);
case "dataset":
return new AtomicAction<>(Dataset.class, (Dataset) oaf);
default:
// can be an update, where the resulttype is not specified
return new AtomicAction<>(Result.class, (Result) oaf);
}
default:
throw new IllegalArgumentException(
"invalid entity type: " + proto_oaf.getEntity().getType());
}
case relation:
return new AtomicAction<>(Relation.class, (Relation) oaf);
default:
throw new IllegalArgumentException("invalid kind: " + proto_oaf.getKind());
}
}
private static String getTargetBaseDir(String isLookupUrl) throws ISLookUpException {
ISLookUpService isLookUp = ISLookupClientFactory.getLookUpService(isLookupUrl);
String XQUERY =
"collection('/db/DRIVER/ServiceResources/ActionManagerServiceResourceType')//SERVICE_PROPERTIES/PROPERTY[@key = 'basePath']/@value/string()";
return isLookUp.getResourceProfileByQuery(XQUERY);
}
private static String getTargetBaseDir(String isLookupUrl) throws ISLookUpException {
ISLookUpService isLookUp = ISLookupClientFactory.getLookUpService(isLookupUrl);
String XQUERY = "collection('/db/DRIVER/ServiceResources/ActionManagerServiceResourceType')//SERVICE_PROPERTIES/PROPERTY[@key = 'basePath']/@value/string()";
return isLookUp.getResourceProfileByQuery(XQUERY);
}
}

194
dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/partition/PartitionActionSetsByPayloadTypeJob.java
View File

@ -1,15 +1,13 @@
package eu.dnetlib.dhp.actionmanager.partition;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import static org.apache.spark.sql.functions.*;
import eu.dnetlib.dhp.actionmanager.ISClient;
import eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.HdfsSupport;
import java.util.Arrays;
import java.util.List;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.hadoop.io.Text;
import org.apache.spark.SparkConf;
@ -20,123 +18,127 @@ import org.apache.spark.sql.types.*;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import eu.dnetlib.dhp.actionmanager.ISClient;
import eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.HdfsSupport;
/** Partitions given set of action sets by payload type. */
public class PartitionActionSetsByPayloadTypeJob {
private static final Logger logger =
LoggerFactory.getLogger(PartitionActionSetsByPayloadTypeJob.class);
private static final Logger logger = LoggerFactory.getLogger(PartitionActionSetsByPayloadTypeJob.class);
private static final StructType KV_SCHEMA =
StructType$.MODULE$.apply(
Arrays.asList(
StructField$.MODULE$.apply(
"key", DataTypes.StringType, false, Metadata.empty()),
StructField$.MODULE$.apply(
"value", DataTypes.StringType, false, Metadata.empty())));
private static final StructType KV_SCHEMA = StructType$.MODULE$
.apply(
Arrays
.asList(
StructField$.MODULE$.apply("key", DataTypes.StringType, false, Metadata.empty()),
StructField$.MODULE$.apply("value", DataTypes.StringType, false, Metadata.empty())));
private static final StructType ATOMIC_ACTION_SCHEMA =
StructType$.MODULE$.apply(
Arrays.asList(
StructField$.MODULE$.apply(
"clazz", DataTypes.StringType, false, Metadata.empty()),
StructField$.MODULE$.apply(
"payload", DataTypes.StringType, false, Metadata.empty())));
private static final StructType ATOMIC_ACTION_SCHEMA = StructType$.MODULE$
.apply(
Arrays
.asList(
StructField$.MODULE$.apply("clazz", DataTypes.StringType, false, Metadata.empty()),
StructField$.MODULE$
.apply(
"payload", DataTypes.StringType, false, Metadata.empty())));
private ISClient isClient;
private ISClient isClient;
public PartitionActionSetsByPayloadTypeJob(String isLookupUrl) {
this.isClient = new ISClient(isLookupUrl);
}
public PartitionActionSetsByPayloadTypeJob(String isLookupUrl) {
this.isClient = new ISClient(isLookupUrl);
}
public PartitionActionSetsByPayloadTypeJob() {}
public PartitionActionSetsByPayloadTypeJob() {
}
public static void main(String[] args) throws Exception {
String jsonConfiguration =
IOUtils.toString(
PromoteActionPayloadForGraphTableJob.class.getResourceAsStream(
"/eu/dnetlib/dhp/actionmanager/partition/partition_action_sets_by_payload_type_input_parameters.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
parser.parseArgument(args);
public static void main(String[] args) throws Exception {
String jsonConfiguration = IOUtils
.toString(
PromoteActionPayloadForGraphTableJob.class
.getResourceAsStream(
"/eu/dnetlib/dhp/actionmanager/partition/partition_action_sets_by_payload_type_input_parameters.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
parser.parseArgument(args);
Boolean isSparkSessionManaged =
Optional.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
logger.info("isSparkSessionManaged: {}", isSparkSessionManaged);
Boolean isSparkSessionManaged = Optional
.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
logger.info("isSparkSessionManaged: {}", isSparkSessionManaged);
String inputActionSetIds = parser.get("inputActionSetIds");
logger.info("inputActionSetIds: {}", inputActionSetIds);
String inputActionSetIds = parser.get("inputActionSetIds");
logger.info("inputActionSetIds: {}", inputActionSetIds);
String outputPath = parser.get("outputPath");
logger.info("outputPath: {}", outputPath);
String outputPath = parser.get("outputPath");
logger.info("outputPath: {}", outputPath);
String isLookupUrl = parser.get("isLookupUrl");
logger.info("isLookupUrl: {}", isLookupUrl);
String isLookupUrl = parser.get("isLookupUrl");
logger.info("isLookupUrl: {}", isLookupUrl);
new PartitionActionSetsByPayloadTypeJob(isLookupUrl)
.run(isSparkSessionManaged, inputActionSetIds, outputPath);
}
new PartitionActionSetsByPayloadTypeJob(isLookupUrl)
.run(isSparkSessionManaged, inputActionSetIds, outputPath);
}
protected void run(Boolean isSparkSessionManaged, String inputActionSetIds, String outputPath) {
protected void run(Boolean isSparkSessionManaged, String inputActionSetIds, String outputPath) {
List<String> inputActionSetPaths = getIsClient().getLatestRawsetPaths(inputActionSetIds);
logger.info("inputActionSetPaths: {}", String.join(",", inputActionSetPaths));
List<String> inputActionSetPaths = getIsClient().getLatestRawsetPaths(inputActionSetIds);
logger.info("inputActionSetPaths: {}", String.join(",", inputActionSetPaths));
SparkConf conf = new SparkConf();
conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
SparkConf conf = new SparkConf();
conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
runWithSparkSession(
conf,
isSparkSessionManaged,
spark -> {
removeOutputDir(spark, outputPath);
readAndWriteActionSetsFromPaths(spark, inputActionSetPaths, outputPath);
});
}
runWithSparkSession(
conf,
isSparkSessionManaged,
spark -> {
removeOutputDir(spark, outputPath);
readAndWriteActionSetsFromPaths(spark, inputActionSetPaths, outputPath);
});
}
private static void removeOutputDir(SparkSession spark, String path) {
HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
}
private static void removeOutputDir(SparkSession spark, String path) {
HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
}
private static void readAndWriteActionSetsFromPaths(
SparkSession spark, List<String> inputActionSetPaths, String outputPath) {
inputActionSetPaths.stream()
.filter(
path ->
HdfsSupport.exists(
path, spark.sparkContext().hadoopConfiguration()))
.forEach(
inputActionSetPath -> {
Dataset<Row> actionDS =
readActionSetFromPath(spark, inputActionSetPath);
saveActions(actionDS, outputPath);
});
}
private static void readAndWriteActionSetsFromPaths(
SparkSession spark, List<String> inputActionSetPaths, String outputPath) {
inputActionSetPaths
.stream()
.filter(path -> HdfsSupport.exists(path, spark.sparkContext().hadoopConfiguration()))
.forEach(
inputActionSetPath -> {
Dataset<Row> actionDS = readActionSetFromPath(spark, inputActionSetPath);
saveActions(actionDS, outputPath);
});
}
private static Dataset<Row> readActionSetFromPath(SparkSession spark, String path) {
logger.info("Reading actions from path: {}", path);
private static Dataset<Row> readActionSetFromPath(SparkSession spark, String path) {
logger.info("Reading actions from path: {}", path);
JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<Row> rdd =
sc.sequenceFile(path, Text.class, Text.class)
.map(x -> RowFactory.create(x._1().toString(), x._2().toString()));
JavaRDD<Row> rdd = sc
.sequenceFile(path, Text.class, Text.class)
.map(x -> RowFactory.create(x._1().toString(), x._2().toString()));
return spark.createDataFrame(rdd, KV_SCHEMA)
.withColumn("atomic_action", from_json(col("value"), ATOMIC_ACTION_SCHEMA))
.select(expr("atomic_action.*"));
}
return spark
.createDataFrame(rdd, KV_SCHEMA)
.withColumn("atomic_action", from_json(col("value"), ATOMIC_ACTION_SCHEMA))
.select(expr("atomic_action.*"));
}
private static void saveActions(Dataset<Row> actionDS, String path) {
logger.info("Saving actions to path: {}", path);
actionDS.write().partitionBy("clazz").mode(SaveMode.Append).parquet(path);
}
private static void saveActions(Dataset<Row> actionDS, String path) {
logger.info("Saving actions to path: {}", path);
actionDS.write().partitionBy("clazz").mode(SaveMode.Append).parquet(path);
}
public ISClient getIsClient() {
return isClient;
}
public ISClient getIsClient() {
return isClient;
}
public void setIsClient(ISClient isClient) {
this.isClient = isClient;
}
public void setIsClient(ISClient isClient) {
this.isClient = isClient;
}
}

135
dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/promote/MergeAndGet.java
View File

@ -1,82 +1,87 @@
package eu.dnetlib.dhp.actionmanager.promote;
import static eu.dnetlib.dhp.schema.common.ModelSupport.isSubClass;
import java.util.function.BiFunction;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
import eu.dnetlib.dhp.schema.oaf.Oaf;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import eu.dnetlib.dhp.schema.oaf.Relation;
import java.util.function.BiFunction;
/** OAF model merging support. */
public class MergeAndGet {
private MergeAndGet() {}
private MergeAndGet() {
}
/**
* Strategy for merging OAF model objects.
*
* <p>MERGE_FROM_AND_GET: use OAF 'mergeFrom' method SELECT_NEWER_AND_GET: use last update
* timestamp to return newer instance
*/
public enum Strategy {
MERGE_FROM_AND_GET,
SELECT_NEWER_AND_GET
}
/**
* Strategy for merging OAF model objects.
* <p>
* MERGE_FROM_AND_GET: use OAF 'mergeFrom' method SELECT_NEWER_AND_GET: use last update timestamp to return newer
* instance
*/
public enum Strategy {
MERGE_FROM_AND_GET, SELECT_NEWER_AND_GET
}
/**
* Returns a function for merging OAF model objects.
*
* @param strategy Strategy to be used to merge objects
* @param <G> Graph table type
* @param <A> Action payload type
* @return BiFunction to be used to merge OAF objects
*/
public static <G extends Oaf, A extends Oaf>
SerializableSupplier<BiFunction<G, A, G>> functionFor(Strategy strategy) {
switch (strategy) {
case MERGE_FROM_AND_GET:
return () -> MergeAndGet::mergeFromAndGet;
case SELECT_NEWER_AND_GET:
return () -> MergeAndGet::selectNewerAndGet;
}
throw new RuntimeException();
}
/**
* Returns a function for merging OAF model objects.
*
* @param strategy Strategy to be used to merge objects
* @param <G> Graph table type
* @param <A> Action payload type
* @return BiFunction to be used to merge OAF objects
*/
public static <G extends Oaf, A extends Oaf> SerializableSupplier<BiFunction<G, A, G>> functionFor(
Strategy strategy) {
switch (strategy) {
case MERGE_FROM_AND_GET:
return () -> MergeAndGet::mergeFromAndGet;
case SELECT_NEWER_AND_GET:
return () -> MergeAndGet::selectNewerAndGet;
}
throw new RuntimeException();
}
private static <G extends Oaf, A extends Oaf> G mergeFromAndGet(G x, A y) {
if (isSubClass(x, Relation.class) && isSubClass(y, Relation.class)) {
((Relation) x).mergeFrom((Relation) y);
return x;
} else if (isSubClass(x, OafEntity.class)
&& isSubClass(y, OafEntity.class)
&& isSubClass(x, y)) {
((OafEntity) x).mergeFrom((OafEntity) y);
return x;
}
throw new RuntimeException(
String.format(
"MERGE_FROM_AND_GET incompatible types: %s, %s",
x.getClass().getCanonicalName(), y.getClass().getCanonicalName()));
}
private static <G extends Oaf, A extends Oaf> G mergeFromAndGet(G x, A y) {
if (isSubClass(x, Relation.class) && isSubClass(y, Relation.class)) {
((Relation) x).mergeFrom((Relation) y);
return x;
} else if (isSubClass(x, OafEntity.class)
&& isSubClass(y, OafEntity.class)
&& isSubClass(x, y)) {
((OafEntity) x).mergeFrom((OafEntity) y);
return x;
}
throw new RuntimeException(
String
.format(
"MERGE_FROM_AND_GET incompatible types: %s, %s",
x.getClass().getCanonicalName(), y.getClass().getCanonicalName()));
}
private static <G extends Oaf, A extends Oaf> G selectNewerAndGet(G x, A y) {
if (x.getClass().equals(y.getClass())
&& x.getLastupdatetimestamp() > y.getLastupdatetimestamp()) {
return x;
} else if (x.getClass().equals(y.getClass())
&& x.getLastupdatetimestamp() < y.getLastupdatetimestamp()) {
return (G) y;
} else if (isSubClass(x, y) && x.getLastupdatetimestamp() > y.getLastupdatetimestamp()) {
return x;
} else if (isSubClass(x, y) && x.getLastupdatetimestamp() < y.getLastupdatetimestamp()) {
throw new RuntimeException(
String.format(
"SELECT_NEWER_AND_GET cannot return right type when it is not the same as left type: %s, %s",
x.getClass().getCanonicalName(), y.getClass().getCanonicalName()));
}
throw new RuntimeException(
String.format(
"SELECT_NEWER_AND_GET cannot be used when left is not subtype of right: %s, %s",
x.getClass().getCanonicalName(), y.getClass().getCanonicalName()));
}
private static <G extends Oaf, A extends Oaf> G selectNewerAndGet(G x, A y) {
if (x.getClass().equals(y.getClass())
&& x.getLastupdatetimestamp() > y.getLastupdatetimestamp()) {
return x;
} else if (x.getClass().equals(y.getClass())
&& x.getLastupdatetimestamp() < y.getLastupdatetimestamp()) {
return (G) y;
} else if (isSubClass(x, y) && x.getLastupdatetimestamp() > y.getLastupdatetimestamp()) {
return x;
} else if (isSubClass(x, y) && x.getLastupdatetimestamp() < y.getLastupdatetimestamp()) {
throw new RuntimeException(
String
.format(
"SELECT_NEWER_AND_GET cannot return right type when it is not the same as left type: %s, %s",
x.getClass().getCanonicalName(), y.getClass().getCanonicalName()));
}
throw new RuntimeException(
String
.format(
"SELECT_NEWER_AND_GET cannot be used when left is not subtype of right: %s, %s",
x.getClass().getCanonicalName(), y.getClass().getCanonicalName()));
}
}

416
dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/promote/PromoteActionPayloadForGraphTableJob.java
View File

@ -1,18 +1,14 @@
package eu.dnetlib.dhp.actionmanager.promote;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import static eu.dnetlib.dhp.schema.common.ModelSupport.isSubClass;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
import eu.dnetlib.dhp.common.HdfsSupport;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.oaf.*;
import java.util.Objects;
import java.util.Optional;
import java.util.function.BiFunction;
import java.util.function.Function;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.function.MapFunction;
@ -23,271 +19,207 @@ import org.apache.spark.sql.SparkSession;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
import eu.dnetlib.dhp.common.HdfsSupport;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.oaf.*;
/** Applies a given action payload file to graph table of compatible type. */
public class PromoteActionPayloadForGraphTableJob {
private static final Logger logger =
LoggerFactory.getLogger(PromoteActionPayloadForGraphTableJob.class);
private static final Logger logger = LoggerFactory.getLogger(PromoteActionPayloadForGraphTableJob.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
public static void main(String[] args) throws Exception {
String jsonConfiguration =
IOUtils.toString(
PromoteActionPayloadForGraphTableJob.class.getResourceAsStream(
"/eu/dnetlib/dhp/actionmanager/promote/promote_action_payload_for_graph_table_input_parameters.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
parser.parseArgument(args);
public static void main(String[] args) throws Exception {
String jsonConfiguration = IOUtils
.toString(
PromoteActionPayloadForGraphTableJob.class
.getResourceAsStream(
"/eu/dnetlib/dhp/actionmanager/promote/promote_action_payload_for_graph_table_input_parameters.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
parser.parseArgument(args);
Boolean isSparkSessionManaged =
Optional.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
logger.info("isSparkSessionManaged: {}", isSparkSessionManaged);
Boolean isSparkSessionManaged = Optional
.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
logger.info("isSparkSessionManaged: {}", isSparkSessionManaged);
String inputGraphTablePath = parser.get("inputGraphTablePath");
logger.info("inputGraphTablePath: {}", inputGraphTablePath);
String inputGraphTablePath = parser.get("inputGraphTablePath");
logger.info("inputGraphTablePath: {}", inputGraphTablePath);
String graphTableClassName = parser.get("graphTableClassName");
logger.info("graphTableClassName: {}", graphTableClassName);
String graphTableClassName = parser.get("graphTableClassName");
logger.info("graphTableClassName: {}", graphTableClassName);
String inputActionPayloadPath = parser.get("inputActionPayloadPath");
logger.info("inputActionPayloadPath: {}", inputActionPayloadPath);
String inputActionPayloadPath = parser.get("inputActionPayloadPath");
logger.info("inputActionPayloadPath: {}", inputActionPayloadPath);
String actionPayloadClassName = parser.get("actionPayloadClassName");
logger.info("actionPayloadClassName: {}", actionPayloadClassName);
String actionPayloadClassName = parser.get("actionPayloadClassName");
logger.info("actionPayloadClassName: {}", actionPayloadClassName);
String outputGraphTablePath = parser.get("outputGraphTablePath");
logger.info("outputGraphTablePath: {}", outputGraphTablePath);
String outputGraphTablePath = parser.get("outputGraphTablePath");
logger.info("outputGraphTablePath: {}", outputGraphTablePath);
MergeAndGet.Strategy strategy =
MergeAndGet.Strategy.valueOf(parser.get("mergeAndGetStrategy").toUpperCase());
logger.info("strategy: {}", strategy);
MergeAndGet.Strategy strategy = MergeAndGet.Strategy.valueOf(parser.get("mergeAndGetStrategy").toUpperCase());
logger.info("strategy: {}", strategy);
Class<? extends Oaf> rowClazz = (Class<? extends Oaf>) Class.forName(graphTableClassName);
Class<? extends Oaf> actionPayloadClazz =
(Class<? extends Oaf>) Class.forName(actionPayloadClassName);
Class<? extends Oaf> rowClazz = (Class<? extends Oaf>) Class.forName(graphTableClassName);
Class<? extends Oaf> actionPayloadClazz = (Class<? extends Oaf>) Class.forName(actionPayloadClassName);
throwIfGraphTableClassIsNotSubClassOfActionPayloadClass(rowClazz, actionPayloadClazz);
throwIfGraphTableClassIsNotSubClassOfActionPayloadClass(rowClazz, actionPayloadClazz);
SparkConf conf = new SparkConf();
conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
conf.registerKryoClasses(ModelSupport.getOafModelClasses());
SparkConf conf = new SparkConf();
conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
conf.registerKryoClasses(ModelSupport.getOafModelClasses());
runWithSparkSession(
conf,
isSparkSessionManaged,
spark -> {
removeOutputDir(spark, outputGraphTablePath);
promoteActionPayloadForGraphTable(
spark,
inputGraphTablePath,
inputActionPayloadPath,
outputGraphTablePath,
strategy,
rowClazz,
actionPayloadClazz);
});
}
runWithSparkSession(
conf,
isSparkSessionManaged,
spark -> {
removeOutputDir(spark, outputGraphTablePath);
promoteActionPayloadForGraphTable(
spark,
inputGraphTablePath,
inputActionPayloadPath,
outputGraphTablePath,
strategy,
rowClazz,
actionPayloadClazz);
});
}
private static void throwIfGraphTableClassIsNotSubClassOfActionPayloadClass(
Class<? extends Oaf> rowClazz, Class<? extends Oaf> actionPayloadClazz) {
if (!isSubClass(rowClazz, actionPayloadClazz)) {
String msg =
String.format(
"graph table class is not a subclass of action payload class: graph=%s, action=%s",
rowClazz.getCanonicalName(), actionPayloadClazz.getCanonicalName());
throw new RuntimeException(msg);
}
}
private static void throwIfGraphTableClassIsNotSubClassOfActionPayloadClass(
Class<? extends Oaf> rowClazz, Class<? extends Oaf> actionPayloadClazz) {
if (!isSubClass(rowClazz, actionPayloadClazz)) {
String msg = String
.format(
"graph table class is not a subclass of action payload class: graph=%s, action=%s",
rowClazz.getCanonicalName(), actionPayloadClazz.getCanonicalName());
throw new RuntimeException(msg);
}
}
private static void removeOutputDir(SparkSession spark, String path) {
HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
}
private static void removeOutputDir(SparkSession spark, String path) {
HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
}
private static <G extends Oaf, A extends Oaf> void promoteActionPayloadForGraphTable(
SparkSession spark,
String inputGraphTablePath,
String inputActionPayloadPath,
String outputGraphTablePath,
MergeAndGet.Strategy strategy,
Class<G> rowClazz,
Class<A> actionPayloadClazz) {
Dataset<G> rowDS = readGraphTable(spark, inputGraphTablePath, rowClazz);
Dataset<A> actionPayloadDS =
readActionPayload(spark, inputActionPayloadPath, actionPayloadClazz);
private static <G extends Oaf, A extends Oaf> void promoteActionPayloadForGraphTable(
SparkSession spark,
String inputGraphTablePath,
String inputActionPayloadPath,
String outputGraphTablePath,
MergeAndGet.Strategy strategy,
Class<G> rowClazz,
Class<A> actionPayloadClazz) {
Dataset<G> rowDS = readGraphTable(spark, inputGraphTablePath, rowClazz);
Dataset<A> actionPayloadDS = readActionPayload(spark, inputActionPayloadPath, actionPayloadClazz);
Dataset<G> result =
promoteActionPayloadForGraphTable(
rowDS, actionPayloadDS, strategy, rowClazz, actionPayloadClazz)
.map((MapFunction<G, G>) value -> value, Encoders.bean(rowClazz));
Dataset<G> result = promoteActionPayloadForGraphTable(
rowDS, actionPayloadDS, strategy, rowClazz, actionPayloadClazz)
.map((MapFunction<G, G>) value -> value, Encoders.bean(rowClazz));
saveGraphTable(result, outputGraphTablePath);
}
saveGraphTable(result, outputGraphTablePath);
}
private static <G extends Oaf> Dataset<G> readGraphTable(
SparkSession spark, String path, Class<G> rowClazz) {
logger.info("Reading graph table from path: {}", path);
private static <G extends Oaf> Dataset<G> readGraphTable(
SparkSession spark, String path, Class<G> rowClazz) {
logger.info("Reading graph table from path: {}", path);
return spark.read()
.textFile(path)
.map(
(MapFunction<String, G>) value -> OBJECT_MAPPER.readValue(value, rowClazz),
Encoders.bean(rowClazz));
return spark
.read()
.textFile(path)
.map(
(MapFunction<String, G>) value -> OBJECT_MAPPER.readValue(value, rowClazz),
Encoders.bean(rowClazz));
/*
return spark
.read()
.parquet(path)
.as(Encoders.bean(rowClazz));
*/
}
/*
* return spark .read() .parquet(path) .as(Encoders.bean(rowClazz));
*/
}
private static <A extends Oaf> Dataset<A> readActionPayload(
SparkSession spark, String path, Class<A> actionPayloadClazz) {
logger.info("Reading action payload from path: {}", path);
return spark.read()
.parquet(path)
.map(
(MapFunction<Row, A>)
value ->
OBJECT_MAPPER.readValue(
value.<String>getAs("payload"), actionPayloadClazz),
Encoders.bean(actionPayloadClazz));
}
private static <A extends Oaf> Dataset<A> readActionPayload(
SparkSession spark, String path, Class<A> actionPayloadClazz) {
logger.info("Reading action payload from path: {}", path);
return spark
.read()
.parquet(path)
.map(
(MapFunction<Row, A>) value -> OBJECT_MAPPER
.readValue(value.<String> getAs("payload"), actionPayloadClazz),
Encoders.bean(actionPayloadClazz));
}
private static <G extends Oaf, A extends Oaf> Dataset<G> promoteActionPayloadForGraphTable(
Dataset<G> rowDS,
Dataset<A> actionPayloadDS,
MergeAndGet.Strategy strategy,
Class<G> rowClazz,
Class<A> actionPayloadClazz) {
logger.info(
"Promoting action payload for graph table: payload={}, table={}",
actionPayloadClazz.getSimpleName(),
rowClazz.getSimpleName());
private static <G extends Oaf, A extends Oaf> Dataset<G> promoteActionPayloadForGraphTable(
Dataset<G> rowDS,
Dataset<A> actionPayloadDS,
MergeAndGet.Strategy strategy,
Class<G> rowClazz,
Class<A> actionPayloadClazz) {
logger
.info(
"Promoting action payload for graph table: payload={}, table={}",
actionPayloadClazz.getSimpleName(),
rowClazz.getSimpleName());
SerializableSupplier<Function<G, String>> rowIdFn =
PromoteActionPayloadForGraphTableJob::idFn;
SerializableSupplier<Function<A, String>> actionPayloadIdFn =
PromoteActionPayloadForGraphTableJob::idFn;
SerializableSupplier<BiFunction<G, A, G>> mergeRowWithActionPayloadAndGetFn =
MergeAndGet.functionFor(strategy);
SerializableSupplier<BiFunction<G, G, G>> mergeRowsAndGetFn =
MergeAndGet.functionFor(strategy);
SerializableSupplier<G> zeroFn = zeroFn(rowClazz);
SerializableSupplier<Function<G, Boolean>> isNotZeroFn =
PromoteActionPayloadForGraphTableJob::isNotZeroFnUsingIdOrSource;
SerializableSupplier<Function<G, String>> rowIdFn = ModelSupport::idFn;
SerializableSupplier<Function<A, String>> actionPayloadIdFn = ModelSupport::idFn;
SerializableSupplier<BiFunction<G, A, G>> mergeRowWithActionPayloadAndGetFn = MergeAndGet.functionFor(strategy);
SerializableSupplier<BiFunction<G, G, G>> mergeRowsAndGetFn = MergeAndGet.functionFor(strategy);
SerializableSupplier<G> zeroFn = zeroFn(rowClazz);
SerializableSupplier<Function<G, Boolean>> isNotZeroFn = PromoteActionPayloadForGraphTableJob::isNotZeroFnUsingIdOrSource;
Dataset<G> joinedAndMerged =
PromoteActionPayloadFunctions.joinGraphTableWithActionPayloadAndMerge(
rowDS,
actionPayloadDS,
rowIdFn,
actionPayloadIdFn,
mergeRowWithActionPayloadAndGetFn,
rowClazz,
actionPayloadClazz);
Dataset<G> joinedAndMerged = PromoteActionPayloadFunctions
.joinGraphTableWithActionPayloadAndMerge(
rowDS,
actionPayloadDS,
rowIdFn,
actionPayloadIdFn,
mergeRowWithActionPayloadAndGetFn,
rowClazz,
actionPayloadClazz);
return PromoteActionPayloadFunctions.groupGraphTableByIdAndMerge(
joinedAndMerged, rowIdFn, mergeRowsAndGetFn, zeroFn, isNotZeroFn, rowClazz);
}
return PromoteActionPayloadFunctions
.groupGraphTableByIdAndMerge(
joinedAndMerged, rowIdFn, mergeRowsAndGetFn, zeroFn, isNotZeroFn, rowClazz);
}
private static <T extends Oaf> Function<T, String> idFn() {
return x -> {
if (isSubClass(x, Relation.class)) {
return idFnForRelation(x);
}
return idFnForOafEntity(x);
};
}
private static <T extends Oaf> SerializableSupplier<T> zeroFn(Class<T> clazz) {
switch (clazz.getCanonicalName()) {
case "eu.dnetlib.dhp.schema.oaf.Dataset":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Dataset());
case "eu.dnetlib.dhp.schema.oaf.Datasource":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Datasource());
case "eu.dnetlib.dhp.schema.oaf.Organization":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Organization());
case "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.OtherResearchProduct());
case "eu.dnetlib.dhp.schema.oaf.Project":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Project());
case "eu.dnetlib.dhp.schema.oaf.Publication":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Publication());
case "eu.dnetlib.dhp.schema.oaf.Relation":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Relation());
case "eu.dnetlib.dhp.schema.oaf.Software":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Software());
default:
throw new RuntimeException("unknown class: " + clazz.getCanonicalName());
}
}
private static <T extends Oaf> String idFnForRelation(T t) {
Relation r = (Relation) t;
return Optional.ofNullable(r.getSource())
.map(
source ->
Optional.ofNullable(r.getTarget())
.map(
target ->
Optional.ofNullable(r.getRelType())
.map(
relType ->
Optional.ofNullable(
r
.getSubRelType())
.map(
subRelType ->
Optional
.ofNullable(
r
.getRelClass())
.map(
relClass ->
String
.join(
source,
target,
relType,
subRelType,
relClass))
.orElse(
String
.join(
source,
target,
relType,
subRelType)))
.orElse(
String
.join(
source,
target,
relType)))
.orElse(
String.join(
source, target)))
.orElse(source))
.orElse(null);
}
private static <T extends Oaf> Function<T, Boolean> isNotZeroFnUsingIdOrSource() {
return t -> {
if (isSubClass(t, Relation.class)) {
return Objects.nonNull(((Relation) t).getSource());
}
return Objects.nonNull(((OafEntity) t).getId());
};
}
private static <T extends Oaf> String idFnForOafEntity(T t) {
return ((OafEntity) t).getId();
}
private static <T extends Oaf> SerializableSupplier<T> zeroFn(Class<T> clazz) {
switch (clazz.getCanonicalName()) {
case "eu.dnetlib.dhp.schema.oaf.Dataset":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Dataset());
case "eu.dnetlib.dhp.schema.oaf.Datasource":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Datasource());
case "eu.dnetlib.dhp.schema.oaf.Organization":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Organization());
case "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.OtherResearchProduct());
case "eu.dnetlib.dhp.schema.oaf.Project":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Project());
case "eu.dnetlib.dhp.schema.oaf.Publication":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Publication());
case "eu.dnetlib.dhp.schema.oaf.Relation":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Relation());
case "eu.dnetlib.dhp.schema.oaf.Software":
return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Software());
default:
throw new RuntimeException("unknown class: " + clazz.getCanonicalName());
}
}
private static <T extends Oaf> Function<T, Boolean> isNotZeroFnUsingIdOrSource() {
return t -> {
if (isSubClass(t, Relation.class)) {
return Objects.nonNull(((Relation) t).getSource());
}
return Objects.nonNull(((OafEntity) t).getId());
};
}
private static <G extends Oaf> void saveGraphTable(Dataset<G> result, String path) {
logger.info("Saving graph table to path: {}", path);
result.toJSON().write().option("compression", "gzip").text(path);
}
private static <G extends Oaf> void saveGraphTable(Dataset<G> result, String path) {
logger.info("Saving graph table to path: {}", path);
result.toJSON().write().option("compression", "gzip").text(path);
}
}

310
dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/promote/PromoteActionPayloadFunctions.java
View File

@ -1,13 +1,13 @@
package eu.dnetlib.dhp.actionmanager.promote;
import static eu.dnetlib.dhp.schema.common.ModelSupport.isSubClass;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
import eu.dnetlib.dhp.schema.oaf.Oaf;
import java.util.Objects;
import java.util.Optional;
import java.util.function.BiFunction;
import java.util.function.Function;
import org.apache.spark.api.java.function.FilterFunction;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.sql.Dataset;
@ -15,182 +15,170 @@ import org.apache.spark.sql.Encoder;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.TypedColumn;
import org.apache.spark.sql.expressions.Aggregator;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
import eu.dnetlib.dhp.schema.oaf.Oaf;
import scala.Tuple2;
/** Promote action payload functions. */
public class PromoteActionPayloadFunctions {
private PromoteActionPayloadFunctions() {}
private PromoteActionPayloadFunctions() {
}
/**
* Joins dataset representing graph table with dataset representing action payload using
* supplied functions.
*
* @param rowDS Dataset representing graph table
* @param actionPayloadDS Dataset representing action payload
* @param rowIdFn Function used to get the id of graph table row
* @param actionPayloadIdFn Function used to get id of action payload instance
* @param mergeAndGetFn Function used to merge graph table row and action payload instance
* @param rowClazz Class of graph table
* @param actionPayloadClazz Class of action payload
* @param <G> Type of graph table row
* @param <A> Type of action payload instance
* @return Dataset of merged graph table rows and action payload instances
*/
public static <G extends Oaf, A extends Oaf> Dataset<G> joinGraphTableWithActionPayloadAndMerge(
Dataset<G> rowDS,
Dataset<A> actionPayloadDS,
SerializableSupplier<Function<G, String>> rowIdFn,
SerializableSupplier<Function<A, String>> actionPayloadIdFn,
SerializableSupplier<BiFunction<G, A, G>> mergeAndGetFn,
Class<G> rowClazz,
Class<A> actionPayloadClazz) {
if (!isSubClass(rowClazz, actionPayloadClazz)) {
throw new RuntimeException(
"action payload type must be the same or be a super type of table row type");
}
/**
* Joins dataset representing graph table with dataset representing action payload using supplied functions.
*
* @param rowDS Dataset representing graph table
* @param actionPayloadDS Dataset representing action payload
* @param rowIdFn Function used to get the id of graph table row
* @param actionPayloadIdFn Function used to get id of action payload instance
* @param mergeAndGetFn Function used to merge graph table row and action payload instance
* @param rowClazz Class of graph table
* @param actionPayloadClazz Class of action payload
* @param <G> Type of graph table row
* @param <A> Type of action payload instance
* @return Dataset of merged graph table rows and action payload instances
*/
public static <G extends Oaf, A extends Oaf> Dataset<G> joinGraphTableWithActionPayloadAndMerge(
Dataset<G> rowDS,
Dataset<A> actionPayloadDS,
SerializableSupplier<Function<G, String>> rowIdFn,
SerializableSupplier<Function<A, String>> actionPayloadIdFn,
SerializableSupplier<BiFunction<G, A, G>> mergeAndGetFn,
Class<G> rowClazz,
Class<A> actionPayloadClazz) {
if (!isSubClass(rowClazz, actionPayloadClazz)) {
throw new RuntimeException(
"action payload type must be the same or be a super type of table row type");
}
Dataset<Tuple2<String, G>> rowWithIdDS = mapToTupleWithId(rowDS, rowIdFn, rowClazz);
Dataset<Tuple2<String, A>> actionPayloadWithIdDS =
mapToTupleWithId(actionPayloadDS, actionPayloadIdFn, actionPayloadClazz);
Dataset<Tuple2<String, G>> rowWithIdDS = mapToTupleWithId(rowDS, rowIdFn, rowClazz);
Dataset<Tuple2<String, A>> actionPayloadWithIdDS = mapToTupleWithId(
actionPayloadDS, actionPayloadIdFn, actionPayloadClazz);
return rowWithIdDS
.joinWith(
actionPayloadWithIdDS,
rowWithIdDS.col("_1").equalTo(actionPayloadWithIdDS.col("_1")),
"full_outer")
.map(
(MapFunction<Tuple2<Tuple2<String, G>, Tuple2<String, A>>, G>)
value -> {
Optional<G> rowOpt =
Optional.ofNullable(value._1()).map(Tuple2::_2);
Optional<A> actionPayloadOpt =
Optional.ofNullable(value._2()).map(Tuple2::_2);
return rowOpt.map(
row ->
actionPayloadOpt
.map(
actionPayload ->
mergeAndGetFn
.get()
.apply(
row,
actionPayload))
.orElse(row))
.orElseGet(
() ->
actionPayloadOpt
.filter(
actionPayload ->
actionPayload
.getClass()
.equals(
rowClazz))
.map(rowClazz::cast)
.orElse(null));
},
Encoders.kryo(rowClazz))
.filter((FilterFunction<G>) Objects::nonNull);
}
return rowWithIdDS
.joinWith(
actionPayloadWithIdDS,
rowWithIdDS.col("_1").equalTo(actionPayloadWithIdDS.col("_1")),
"full_outer")
.map(
(MapFunction<Tuple2<Tuple2<String, G>, Tuple2<String, A>>, G>) value -> {
Optional<G> rowOpt = Optional.ofNullable(value._1()).map(Tuple2::_2);
Optional<A> actionPayloadOpt = Optional.ofNullable(value._2()).map(Tuple2::_2);
return rowOpt
.map(
row -> actionPayloadOpt
.map(
actionPayload -> mergeAndGetFn.get().apply(row, actionPayload))
.orElse(row))
.orElseGet(
() -> actionPayloadOpt
.filter(
actionPayload -> actionPayload.getClass().equals(rowClazz))
.map(rowClazz::cast)
.orElse(null));
},
Encoders.kryo(rowClazz))
.filter((FilterFunction<G>) Objects::nonNull);
}
private static <T extends Oaf> Dataset<Tuple2<String, T>> mapToTupleWithId(
Dataset<T> ds, SerializableSupplier<Function<T, String>> idFn, Class<T> clazz) {
return ds.map(
(MapFunction<T, Tuple2<String, T>>)
value -> new Tuple2<>(idFn.get().apply(value), value),
Encoders.tuple(Encoders.STRING(), Encoders.kryo(clazz)));
}
private static <T extends Oaf> Dataset<Tuple2<String, T>> mapToTupleWithId(
Dataset<T> ds, SerializableSupplier<Function<T, String>> idFn, Class<T> clazz) {
return ds
.map(
(MapFunction<T, Tuple2<String, T>>) value -> new Tuple2<>(idFn.get().apply(value), value),
Encoders.tuple(Encoders.STRING(), Encoders.kryo(clazz)));
}
/**
* Groups graph table by id and aggregates using supplied functions.
*
* @param rowDS Dataset representing graph table
* @param rowIdFn Function used to get the id of graph table row
* @param mergeAndGetFn Function used to merge graph table rows
* @param zeroFn Function to create a zero/empty instance of graph table row
* @param isNotZeroFn Function to check if graph table row is not zero/empty
* @param rowClazz Class of graph table
* @param <G> Type of graph table row
* @return Dataset of aggregated graph table rows
*/
public static <G extends Oaf> Dataset<G> groupGraphTableByIdAndMerge(
Dataset<G> rowDS,
SerializableSupplier<Function<G, String>> rowIdFn,
SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn,
SerializableSupplier<G> zeroFn,
SerializableSupplier<Function<G, Boolean>> isNotZeroFn,
Class<G> rowClazz) {
TypedColumn<G, G> aggregator =
new TableAggregator<>(zeroFn, mergeAndGetFn, isNotZeroFn, rowClazz).toColumn();
return rowDS.groupByKey(
(MapFunction<G, String>) x -> rowIdFn.get().apply(x), Encoders.STRING())
.agg(aggregator)
.map((MapFunction<Tuple2<String, G>, G>) Tuple2::_2, Encoders.kryo(rowClazz));
}
/**
* Groups graph table by id and aggregates using supplied functions.
*
* @param rowDS Dataset representing graph table
* @param rowIdFn Function used to get the id of graph table row
* @param mergeAndGetFn Function used to merge graph table rows
* @param zeroFn Function to create a zero/empty instance of graph table row
* @param isNotZeroFn Function to check if graph table row is not zero/empty
* @param rowClazz Class of graph table
* @param <G> Type of graph table row
* @return Dataset of aggregated graph table rows
*/
public static <G extends Oaf> Dataset<G> groupGraphTableByIdAndMerge(
Dataset<G> rowDS,
SerializableSupplier<Function<G, String>> rowIdFn,
SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn,
SerializableSupplier<G> zeroFn,
SerializableSupplier<Function<G, Boolean>> isNotZeroFn,
Class<G> rowClazz) {
TypedColumn<G, G> aggregator = new TableAggregator<>(zeroFn, mergeAndGetFn, isNotZeroFn, rowClazz).toColumn();
return rowDS
.groupByKey((MapFunction<G, String>) x -> rowIdFn.get().apply(x), Encoders.STRING())
.agg(aggregator)
.map((MapFunction<Tuple2<String, G>, G>) Tuple2::_2, Encoders.kryo(rowClazz));
}
/**
* Aggregator to be used for aggregating graph table rows during grouping.
*
* @param <G> Type of graph table row
*/
public static class TableAggregator<G extends Oaf> extends Aggregator<G, G, G> {
private SerializableSupplier<G> zeroFn;
private SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn;
private SerializableSupplier<Function<G, Boolean>> isNotZeroFn;
private Class<G> rowClazz;
/**
* Aggregator to be used for aggregating graph table rows during grouping.
*
* @param <G> Type of graph table row
*/
public static class TableAggregator<G extends Oaf> extends Aggregator<G, G, G> {
private final SerializableSupplier<G> zeroFn;
private final SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn;
private final SerializableSupplier<Function<G, Boolean>> isNotZeroFn;
private final Class<G> rowClazz;
public TableAggregator(
SerializableSupplier<G> zeroFn,
SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn,
SerializableSupplier<Function<G, Boolean>> isNotZeroFn,
Class<G> rowClazz) {
this.zeroFn = zeroFn;
this.mergeAndGetFn = mergeAndGetFn;
this.isNotZeroFn = isNotZeroFn;
this.rowClazz = rowClazz;
}
public TableAggregator(
SerializableSupplier<G> zeroFn,
SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn,
SerializableSupplier<Function<G, Boolean>> isNotZeroFn,
Class<G> rowClazz) {
this.zeroFn = zeroFn;
this.mergeAndGetFn = mergeAndGetFn;
this.isNotZeroFn = isNotZeroFn;
this.rowClazz = rowClazz;
}
@Override
public G zero() {
return zeroFn.get();
}
@Override
public G zero() {
return zeroFn.get();
}
@Override
public G reduce(G b, G a) {
return zeroSafeMergeAndGet(b, a);
}
@Override
public G reduce(G b, G a) {
return zeroSafeMergeAndGet(b, a);
}
@Override
public G merge(G b1, G b2) {
return zeroSafeMergeAndGet(b1, b2);
}
@Override
public G merge(G b1, G b2) {
return zeroSafeMergeAndGet(b1, b2);
}
private G zeroSafeMergeAndGet(G left, G right) {
Function<G, Boolean> isNotZero = isNotZeroFn.get();
if (isNotZero.apply(left) && isNotZero.apply(right)) {
return mergeAndGetFn.get().apply(left, right);
} else if (isNotZero.apply(left) && !isNotZero.apply(right)) {
return left;
} else if (!isNotZero.apply(left) && isNotZero.apply(right)) {
return right;
}
throw new RuntimeException(
"internal aggregation error: left and right objects are zero");
}
private G zeroSafeMergeAndGet(G left, G right) {
Function<G, Boolean> isNotZero = isNotZeroFn.get();
if (isNotZero.apply(left) && isNotZero.apply(right)) {
return mergeAndGetFn.get().apply(left, right);
} else if (isNotZero.apply(left) && !isNotZero.apply(right)) {
return left;
} else if (!isNotZero.apply(left) && isNotZero.apply(right)) {
return right;
}
throw new RuntimeException("internal aggregation error: left and right objects are zero");
}
@Override
public G finish(G reduction) {
return reduction;
}
@Override
public G finish(G reduction) {
return reduction;
}
@Override
public Encoder<G> bufferEncoder() {
return Encoders.kryo(rowClazz);
}
@Override
public Encoder<G> bufferEncoder() {
return Encoders.kryo(rowClazz);
}
@Override
public Encoder<G> outputEncoder() {
return Encoders.kryo(rowClazz);
}
}
@Override
public Encoder<G> outputEncoder() {
return Encoders.kryo(rowClazz);
}
}
}

352
dhp-workflows/dhp-actionmanager/src/test/java/eu/dnetlib/dhp/actionmanager/partition/PartitionActionSetsByPayloadTypeJobTest.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.actionmanager.partition;
import static eu.dnetlib.dhp.common.ThrowingSupport.rethrowAsRuntimeException;
@ -5,16 +6,13 @@ import static org.apache.spark.sql.functions.*;
import static org.junit.jupiter.api.Assertions.assertIterableEquals;
import static scala.collection.JavaConversions.mutableSeqAsJavaList;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.ISClient;
import eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJobTest;
import eu.dnetlib.dhp.schema.oaf.*;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.*;
import java.util.stream.Collectors;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Job;
@ -32,214 +30,212 @@ import org.junit.jupiter.api.io.TempDir;
import org.mockito.Mock;
import org.mockito.Mockito;
import org.mockito.junit.jupiter.MockitoExtension;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.ISClient;
import eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJobTest;
import eu.dnetlib.dhp.schema.oaf.*;
import scala.Tuple2;
import scala.collection.mutable.Seq;
@ExtendWith(MockitoExtension.class)
public class PartitionActionSetsByPayloadTypeJobTest {
private static final ClassLoader cl =
PartitionActionSetsByPayloadTypeJobTest.class.getClassLoader();
private static final ClassLoader cl = PartitionActionSetsByPayloadTypeJobTest.class.getClassLoader();
private static Configuration configuration;
private static SparkSession spark;
private static Configuration configuration;
private static SparkSession spark;
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static final StructType ATOMIC_ACTION_SCHEMA =
StructType$.MODULE$.apply(
Arrays.asList(
StructField$.MODULE$.apply(
"clazz", DataTypes.StringType, false, Metadata.empty()),
StructField$.MODULE$.apply(
"payload", DataTypes.StringType, false, Metadata.empty())));
private static final StructType ATOMIC_ACTION_SCHEMA = StructType$.MODULE$
.apply(
Arrays
.asList(
StructField$.MODULE$.apply("clazz", DataTypes.StringType, false, Metadata.empty()),
StructField$.MODULE$
.apply(
"payload", DataTypes.StringType, false, Metadata.empty())));
@BeforeAll
public static void beforeAll() throws IOException {
configuration = Job.getInstance().getConfiguration();
SparkConf conf = new SparkConf();
conf.setAppName(PromoteActionPayloadForGraphTableJobTest.class.getSimpleName());
conf.setMaster("local");
conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
spark = SparkSession.builder().config(conf).getOrCreate();
}
@BeforeAll
public static void beforeAll() throws IOException {
configuration = Job.getInstance().getConfiguration();
SparkConf conf = new SparkConf();
conf.setAppName(PromoteActionPayloadForGraphTableJobTest.class.getSimpleName());
conf.setMaster("local");
conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
spark = SparkSession.builder().config(conf).getOrCreate();
}
@AfterAll
public static void afterAll() {
spark.stop();
}
@AfterAll
public static void afterAll() {
spark.stop();
}
@DisplayName("Job")
@Nested
class Main {
@DisplayName("Job")
@Nested
class Main {
@Mock private ISClient isClient;
@Mock
private ISClient isClient;
@Test
public void shouldPartitionActionSetsByPayloadType(@TempDir Path workingDir)
throws Exception {
// given
Path inputActionSetsBaseDir = workingDir.resolve("input").resolve("action_sets");
Path outputDir = workingDir.resolve("output");
@Test
public void shouldPartitionActionSetsByPayloadType(@TempDir Path workingDir) throws Exception {
// given
Path inputActionSetsBaseDir = workingDir.resolve("input").resolve("action_sets");
Path outputDir = workingDir.resolve("output");
Map<String, List<String>> oafsByClassName = createActionSets(inputActionSetsBaseDir);
Map<String, List<String>> oafsByClassName = createActionSets(inputActionSetsBaseDir);
List<String> inputActionSetsPaths = resolveInputActionSetPaths(inputActionSetsBaseDir);
List<String> inputActionSetsPaths = resolveInputActionSetPaths(inputActionSetsBaseDir);
// when
Mockito.when(isClient.getLatestRawsetPaths(Mockito.anyString()))
.thenReturn(inputActionSetsPaths);
// when
Mockito
.when(isClient.getLatestRawsetPaths(Mockito.anyString()))
.thenReturn(inputActionSetsPaths);
PartitionActionSetsByPayloadTypeJob job = new PartitionActionSetsByPayloadTypeJob();
job.setIsClient(isClient);
job.run(
Boolean.FALSE,
"", // it can be empty we're mocking the response from isClient to resolve the
// paths
outputDir.toString());
PartitionActionSetsByPayloadTypeJob job = new PartitionActionSetsByPayloadTypeJob();
job.setIsClient(isClient);
job
.run(
Boolean.FALSE,
"", // it can be empty we're mocking the response from isClient
// to
// resolve the
// paths
outputDir.toString());
// then
Files.exists(outputDir);
// then
Files.exists(outputDir);
assertForOafType(outputDir, oafsByClassName, eu.dnetlib.dhp.schema.oaf.Dataset.class);
assertForOafType(outputDir, oafsByClassName, Datasource.class);
assertForOafType(outputDir, oafsByClassName, Organization.class);
assertForOafType(outputDir, oafsByClassName, OtherResearchProduct.class);
assertForOafType(outputDir, oafsByClassName, Project.class);
assertForOafType(outputDir, oafsByClassName, Publication.class);
assertForOafType(outputDir, oafsByClassName, Result.class);
assertForOafType(outputDir, oafsByClassName, Relation.class);
assertForOafType(outputDir, oafsByClassName, Software.class);
}
}
assertForOafType(outputDir, oafsByClassName, eu.dnetlib.dhp.schema.oaf.Dataset.class);
assertForOafType(outputDir, oafsByClassName, Datasource.class);
assertForOafType(outputDir, oafsByClassName, Organization.class);
assertForOafType(outputDir, oafsByClassName, OtherResearchProduct.class);
assertForOafType(outputDir, oafsByClassName, Project.class);
assertForOafType(outputDir, oafsByClassName, Publication.class);
assertForOafType(outputDir, oafsByClassName, Result.class);
assertForOafType(outputDir, oafsByClassName, Relation.class);
assertForOafType(outputDir, oafsByClassName, Software.class);
}
}
private List<String> resolveInputActionSetPaths(Path inputActionSetsBaseDir)
throws IOException {
Path inputActionSetJsonDumpsDir = getInputActionSetJsonDumpsDir();
return Files.list(inputActionSetJsonDumpsDir)
.map(
path -> {
String inputActionSetId = path.getFileName().toString();
return inputActionSetsBaseDir.resolve(inputActionSetId).toString();
})
.collect(Collectors.toCollection(ArrayList::new));
}
private List<String> resolveInputActionSetPaths(Path inputActionSetsBaseDir) throws IOException {
Path inputActionSetJsonDumpsDir = getInputActionSetJsonDumpsDir();
return Files
.list(inputActionSetJsonDumpsDir)
.map(
path -> {
String inputActionSetId = path.getFileName().toString();
return inputActionSetsBaseDir.resolve(inputActionSetId).toString();
})
.collect(Collectors.toCollection(ArrayList::new));
}
private static Map<String, List<String>> createActionSets(Path inputActionSetsDir)
throws IOException {
Path inputActionSetJsonDumpsDir = getInputActionSetJsonDumpsDir();
private static Map<String, List<String>> createActionSets(Path inputActionSetsDir)
throws IOException {
Path inputActionSetJsonDumpsDir = getInputActionSetJsonDumpsDir();
Map<String, List<String>> oafsByType = new HashMap<>();
Files.list(inputActionSetJsonDumpsDir)
.forEach(
inputActionSetJsonDumpFile -> {
String inputActionSetId =
inputActionSetJsonDumpFile.getFileName().toString();
Path inputActionSetDir = inputActionSetsDir.resolve(inputActionSetId);
Map<String, List<String>> oafsByType = new HashMap<>();
Files
.list(inputActionSetJsonDumpsDir)
.forEach(
inputActionSetJsonDumpFile -> {
String inputActionSetId = inputActionSetJsonDumpFile.getFileName().toString();
Path inputActionSetDir = inputActionSetsDir.resolve(inputActionSetId);
Dataset<String> actionDS =
readActionsFromJsonDump(inputActionSetJsonDumpFile.toString())
.cache();
Dataset<String> actionDS = readActionsFromJsonDump(inputActionSetJsonDumpFile.toString()).cache();
writeActionsAsJobInput(
actionDS, inputActionSetId, inputActionSetDir.toString());
writeActionsAsJobInput(actionDS, inputActionSetId, inputActionSetDir.toString());
Map<String, List<String>> actionSetOafsByType =
actionDS
.withColumn(
"atomic_action",
from_json(col("value"), ATOMIC_ACTION_SCHEMA))
.select(expr("atomic_action.*")).groupBy(col("clazz"))
.agg(collect_list(col("payload")).as("payload_list"))
.collectAsList().stream()
.map(
row ->
new AbstractMap.SimpleEntry<>(
row.<String>getAs("clazz"),
mutableSeqAsJavaList(
row.<Seq<String>>getAs(
"payload_list"))))
.collect(
Collectors.toMap(
AbstractMap.SimpleEntry::getKey,
AbstractMap.SimpleEntry::getValue));
Map<String, List<String>> actionSetOafsByType = actionDS
.withColumn("atomic_action", from_json(col("value"), ATOMIC_ACTION_SCHEMA))
.select(expr("atomic_action.*"))
.groupBy(col("clazz"))
.agg(collect_list(col("payload")).as("payload_list"))
.collectAsList()
.stream()
.map(
row -> new AbstractMap.SimpleEntry<>(
row.<String> getAs("clazz"),
mutableSeqAsJavaList(row.<Seq<String>> getAs("payload_list"))))
.collect(
Collectors
.toMap(
AbstractMap.SimpleEntry::getKey, AbstractMap.SimpleEntry::getValue));
actionSetOafsByType
.keySet()
.forEach(
x -> {
if (oafsByType.containsKey(x)) {
List<String> collected = new ArrayList<>();
collected.addAll(oafsByType.get(x));
collected.addAll(actionSetOafsByType.get(x));
oafsByType.put(x, collected);
} else {
oafsByType.put(x, actionSetOafsByType.get(x));
}
});
});
actionSetOafsByType
.keySet()
.forEach(
x -> {
if (oafsByType.containsKey(x)) {
List<String> collected = new ArrayList<>();
collected.addAll(oafsByType.get(x));
collected.addAll(actionSetOafsByType.get(x));
oafsByType.put(x, collected);
} else {
oafsByType.put(x, actionSetOafsByType.get(x));
}
});
});
return oafsByType;
}
return oafsByType;
}
private static Path getInputActionSetJsonDumpsDir() {
return Paths.get(
Objects.requireNonNull(
cl.getResource("eu/dnetlib/dhp/actionmanager/partition/input/"))
.getFile());
}
private static Path getInputActionSetJsonDumpsDir() {
return Paths
.get(
Objects
.requireNonNull(cl.getResource("eu/dnetlib/dhp/actionmanager/partition/input/"))
.getFile());
}
private static Dataset<String> readActionsFromJsonDump(String path) {
return spark.read().textFile(path);
}
private static Dataset<String> readActionsFromJsonDump(String path) {
return spark.read().textFile(path);
}
private static void writeActionsAsJobInput(
Dataset<String> actionDS, String inputActionSetId, String path) {
actionDS.javaRDD()
.mapToPair(json -> new Tuple2<>(new Text(inputActionSetId), new Text(json)))
.saveAsNewAPIHadoopFile(
path,
Text.class,
Text.class,
SequenceFileOutputFormat.class,
configuration);
}
private static void writeActionsAsJobInput(
Dataset<String> actionDS, String inputActionSetId, String path) {
actionDS
.javaRDD()
.mapToPair(json -> new Tuple2<>(new Text(inputActionSetId), new Text(json)))
.saveAsNewAPIHadoopFile(
path, Text.class, Text.class, SequenceFileOutputFormat.class, configuration);
}
private static <T extends Oaf> void assertForOafType(
Path outputDir, Map<String, List<String>> oafsByClassName, Class<T> clazz) {
Path outputDatasetDir =
outputDir.resolve(String.format("clazz=%s", clazz.getCanonicalName()));
Files.exists(outputDatasetDir);
private static <T extends Oaf> void assertForOafType(
Path outputDir, Map<String, List<String>> oafsByClassName, Class<T> clazz) {
Path outputDatasetDir = outputDir.resolve(String.format("clazz=%s", clazz.getCanonicalName()));
Files.exists(outputDatasetDir);
List<T> actuals =
readActionPayloadFromJobOutput(outputDatasetDir.toString(), clazz).collectAsList();
actuals.sort(Comparator.comparingInt(Object::hashCode));
List<T> actuals = readActionPayloadFromJobOutput(outputDatasetDir.toString(), clazz).collectAsList();
actuals.sort(Comparator.comparingInt(Object::hashCode));
List<T> expecteds =
oafsByClassName.get(clazz.getCanonicalName()).stream()
.map(json -> mapToOaf(json, clazz))
.sorted(Comparator.comparingInt(Object::hashCode))
.collect(Collectors.toList());
List<T> expecteds = oafsByClassName
.get(clazz.getCanonicalName())
.stream()
.map(json -> mapToOaf(json, clazz))
.sorted(Comparator.comparingInt(Object::hashCode))
.collect(Collectors.toList());
assertIterableEquals(expecteds, actuals);
}
assertIterableEquals(expecteds, actuals);
}
private static <T extends Oaf> Dataset<T> readActionPayloadFromJobOutput(
String path, Class<T> clazz) {
return spark.read()
.parquet(path)
.map(
(MapFunction<Row, T>)
value ->
OBJECT_MAPPER.readValue(
value.<String>getAs("payload"), clazz),
Encoders.bean(clazz));
}
private static <T extends Oaf> Dataset<T> readActionPayloadFromJobOutput(
String path, Class<T> clazz) {
return spark
.read()
.parquet(path)
.map(
(MapFunction<Row, T>) value -> OBJECT_MAPPER.readValue(value.<String> getAs("payload"), clazz),
Encoders.bean(clazz));
}
private static <T extends Oaf> T mapToOaf(String json, Class<T> clazz) {
return rethrowAsRuntimeException(
() -> OBJECT_MAPPER.readValue(json, clazz),
String.format(
"failed to map json to class: json=%s, class=%s",
json, clazz.getCanonicalName()));
}
private static <T extends Oaf> T mapToOaf(String json, Class<T> clazz) {
return rethrowAsRuntimeException(
() -> OBJECT_MAPPER.readValue(json, clazz),
String
.format(
"failed to map json to class: json=%s, class=%s", json, clazz.getCanonicalName()));
}
}

397
dhp-workflows/dhp-actionmanager/src/test/java/eu/dnetlib/dhp/actionmanager/promote/MergeAndGetTest.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.actionmanager.promote;
import static eu.dnetlib.dhp.actionmanager.promote.MergeAndGet.Strategy;
@ -5,264 +6,252 @@ import static eu.dnetlib.dhp.actionmanager.promote.MergeAndGet.functionFor;
import static org.junit.jupiter.api.Assertions.*;
import static org.mockito.Mockito.*;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
import eu.dnetlib.dhp.schema.oaf.*;
import java.util.function.BiFunction;
import org.junit.jupiter.api.Nested;
import org.junit.jupiter.api.Test;
import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
import eu.dnetlib.dhp.schema.oaf.*;
public class MergeAndGetTest {
@Nested
class MergeFromAndGetStrategy {
@Nested
class MergeFromAndGetStrategy {
@Test
public void shouldThrowForOafAndOaf() {
// given
Oaf a = mock(Oaf.class);
Oaf b = mock(Oaf.class);
@Test
public void shouldThrowForOafAndOaf() {
// given
Oaf a = mock(Oaf.class);
Oaf b = mock(Oaf.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.MERGE_FROM_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldThrowForOafAndRelation() {
// given
Oaf a = mock(Oaf.class);
Relation b = mock(Relation.class);
@Test
public void shouldThrowForOafAndRelation() {
// given
Oaf a = mock(Oaf.class);
Relation b = mock(Relation.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.MERGE_FROM_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldThrowForOafAndOafEntity() {
// given
Oaf a = mock(Oaf.class);
OafEntity b = mock(OafEntity.class);
@Test
public void shouldThrowForOafAndOafEntity() {
// given
Oaf a = mock(Oaf.class);
OafEntity b = mock(OafEntity.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.MERGE_FROM_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldThrowForRelationAndOaf() {
// given
Relation a = mock(Relation.class);
Oaf b = mock(Oaf.class);
@Test
public void shouldThrowForRelationAndOaf() {
// given
Relation a = mock(Relation.class);
Oaf b = mock(Oaf.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.MERGE_FROM_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldThrowForRelationAndOafEntity() {
// given
Relation a = mock(Relation.class);
OafEntity b = mock(OafEntity.class);
@Test
public void shouldThrowForRelationAndOafEntity() {
// given
Relation a = mock(Relation.class);
OafEntity b = mock(OafEntity.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.MERGE_FROM_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldBehaveProperlyForRelationAndRelation() {
// given
Relation a = mock(Relation.class);
Relation b = mock(Relation.class);
@Test
public void shouldBehaveProperlyForRelationAndRelation() {
// given
Relation a = mock(Relation.class);
Relation b = mock(Relation.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.MERGE_FROM_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
// then
Oaf x = fn.get().apply(a, b);
assertTrue(Relation.class.isAssignableFrom(x.getClass()));
verify(a).mergeFrom(b);
assertEquals(a, x);
}
// then
Oaf x = fn.get().apply(a, b);
assertTrue(Relation.class.isAssignableFrom(x.getClass()));
verify(a).mergeFrom(b);
assertEquals(a, x);
}
@Test
public void shouldThrowForOafEntityAndOaf() {
// given
OafEntity a = mock(OafEntity.class);
Oaf b = mock(Oaf.class);
@Test
public void shouldThrowForOafEntityAndOaf() {
// given
OafEntity a = mock(OafEntity.class);
Oaf b = mock(Oaf.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.MERGE_FROM_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldThrowForOafEntityAndRelation() {
// given
OafEntity a = mock(OafEntity.class);
Relation b = mock(Relation.class);
@Test
public void shouldThrowForOafEntityAndRelation() {
// given
OafEntity a = mock(OafEntity.class);
Relation b = mock(Relation.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.MERGE_FROM_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldThrowForOafEntityAndOafEntityButNotSubclasses() {
// given
class OafEntitySub1 extends OafEntity {}
class OafEntitySub2 extends OafEntity {}
@Test
public void shouldThrowForOafEntityAndOafEntityButNotSubclasses() {
// given
class OafEntitySub1 extends OafEntity {
}
class OafEntitySub2 extends OafEntity {
}
OafEntitySub1 a = mock(OafEntitySub1.class);
OafEntitySub2 b = mock(OafEntitySub2.class);
OafEntitySub1 a = mock(OafEntitySub1.class);
OafEntitySub2 b = mock(OafEntitySub2.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.MERGE_FROM_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldBehaveProperlyForOafEntityAndOafEntity() {
// given
OafEntity a = mock(OafEntity.class);
OafEntity b = mock(OafEntity.class);
@Test
public void shouldBehaveProperlyForOafEntityAndOafEntity() {
// given
OafEntity a = mock(OafEntity.class);
OafEntity b = mock(OafEntity.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.MERGE_FROM_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
// then
Oaf x = fn.get().apply(a, b);
assertTrue(OafEntity.class.isAssignableFrom(x.getClass()));
verify(a).mergeFrom(b);
assertEquals(a, x);
}
}
// then
Oaf x = fn.get().apply(a, b);
assertTrue(OafEntity.class.isAssignableFrom(x.getClass()));
verify(a).mergeFrom(b);
assertEquals(a, x);
}
}
@Nested
class SelectNewerAndGetStrategy {
@Nested
class SelectNewerAndGetStrategy {
@Test
public void shouldThrowForOafEntityAndRelation() {
// given
OafEntity a = mock(OafEntity.class);
Relation b = mock(Relation.class);
@Test
public void shouldThrowForOafEntityAndRelation() {
// given
OafEntity a = mock(OafEntity.class);
Relation b = mock(Relation.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.SELECT_NEWER_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.SELECT_NEWER_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldThrowForRelationAndOafEntity() {
// given
Relation a = mock(Relation.class);
OafEntity b = mock(OafEntity.class);
@Test
public void shouldThrowForRelationAndOafEntity() {
// given
Relation a = mock(Relation.class);
OafEntity b = mock(OafEntity.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.SELECT_NEWER_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.SELECT_NEWER_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldThrowForOafEntityAndResult() {
// given
OafEntity a = mock(OafEntity.class);
Result b = mock(Result.class);
@Test
public void shouldThrowForOafEntityAndResult() {
// given
OafEntity a = mock(OafEntity.class);
Result b = mock(Result.class);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.SELECT_NEWER_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.SELECT_NEWER_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldThrowWhenSuperTypeIsNewerForResultAndOafEntity() {
// given
// real types must be used because subclass-superclass resolution does not work for
// mocks
Dataset a = new Dataset();
a.setLastupdatetimestamp(1L);
Result b = new Result();
b.setLastupdatetimestamp(2L);
@Test
public void shouldThrowWhenSuperTypeIsNewerForResultAndOafEntity() {
// given
// real types must be used because subclass-superclass resolution does not work for
// mocks
Dataset a = new Dataset();
a.setLastupdatetimestamp(1L);
Result b = new Result();
b.setLastupdatetimestamp(2L);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.SELECT_NEWER_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.SELECT_NEWER_AND_GET);
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
// then
assertThrows(RuntimeException.class, () -> fn.get().apply(a, b));
}
@Test
public void shouldShouldReturnLeftForOafEntityAndOafEntity() {
// given
OafEntity a = mock(OafEntity.class);
when(a.getLastupdatetimestamp()).thenReturn(1L);
OafEntity b = mock(OafEntity.class);
when(b.getLastupdatetimestamp()).thenReturn(2L);
@Test
public void shouldShouldReturnLeftForOafEntityAndOafEntity() {
// given
OafEntity a = mock(OafEntity.class);
when(a.getLastupdatetimestamp()).thenReturn(1L);
OafEntity b = mock(OafEntity.class);
when(b.getLastupdatetimestamp()).thenReturn(2L);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.SELECT_NEWER_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.SELECT_NEWER_AND_GET);
// then
Oaf x = fn.get().apply(a, b);
assertTrue(OafEntity.class.isAssignableFrom(x.getClass()));
assertEquals(b, x);
}
// then
Oaf x = fn.get().apply(a, b);
assertTrue(OafEntity.class.isAssignableFrom(x.getClass()));
assertEquals(b, x);
}
@Test
public void shouldShouldReturnRightForOafEntityAndOafEntity() {
// given
OafEntity a = mock(OafEntity.class);
when(a.getLastupdatetimestamp()).thenReturn(2L);
OafEntity b = mock(OafEntity.class);
when(b.getLastupdatetimestamp()).thenReturn(1L);
@Test
public void shouldShouldReturnRightForOafEntityAndOafEntity() {
// given
OafEntity a = mock(OafEntity.class);
when(a.getLastupdatetimestamp()).thenReturn(2L);
OafEntity b = mock(OafEntity.class);
when(b.getLastupdatetimestamp()).thenReturn(1L);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
functionFor(Strategy.SELECT_NEWER_AND_GET);
// when
SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.SELECT_NEWER_AND_GET);
// then
Oaf x = fn.get().apply(a, b);
assertTrue(OafEntity.class.isAssignableFrom(x.getClass()));
assertEquals(a, x);
}
}
// then
Oaf x = fn.get().apply(a, b);
assertTrue(OafEntity.class.isAssignableFrom(x.getClass()));
assertEquals(a, x);
}
}
}

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