forked from D-Net/dnet-hadoop
add test to verify merge scholix on source
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@ -43,6 +43,10 @@ object SparkCreateScholix {
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.map(r => (r.getId, r))(Encoders.tuple(Encoders.STRING, summaryEncoder))
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val res: Array[((String, Relation), (String, ScholixSummary))] =relationDS.joinWith(summaryDS, relationDS("_1").equalTo(summaryDS("_1")), "left").take(10)
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res.foreach(r =>println(r._1._2))
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// relationDS.joinWith(summaryDS, relationDS("_1").equalTo(summaryDS("_1")), "left")
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// .map {input:((String,Relation), (String, ScholixSummary)) =>
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@ -1,30 +1,26 @@
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package eu.dnetlib.dhp.sx.graph.scholix
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import com.fasterxml.jackson.databind.{DeserializationFeature, ObjectMapper, SerializationFeature}
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import eu.dnetlib.dhp.schema.oaf.{Oaf, Relation, Result}
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import eu.dnetlib.dhp.sx.graph.bio.BioDBToOAF
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import eu.dnetlib.dhp.sx.graph.bio.BioDBToOAF.ScholixResolved
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import eu.dnetlib.dhp.schema.oaf.{Relation, Result}
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import eu.dnetlib.dhp.schema.sx.scholix.Scholix
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import eu.dnetlib.dhp.schema.sx.summary.ScholixSummary
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import eu.dnetlib.dhp.sx.graph.bio.pubmed.AbstractVocabularyTest
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import org.json4s
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import org.json4s.DefaultFormats
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import org.json4s.JsonAST.{JField, JObject, JString}
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import org.json4s.jackson.JsonMethods.parse
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import org.junit.jupiter.api.Assertions._
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import org.junit.jupiter.api.extension.ExtendWith
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import org.junit.jupiter.api.{BeforeEach, Test}
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import org.mockito.junit.jupiter.MockitoExtension
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import java.io.{BufferedReader, InputStream, InputStreamReader}
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import java.util.zip.GZIPInputStream
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import scala.collection.JavaConverters._
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import scala.io.Source
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import scala.xml.pull.XMLEventReader
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@ExtendWith(Array(classOf[MockitoExtension]))
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class ScholixGraphTest extends AbstractVocabularyTest{
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val mapper = new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT)
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val mapper: ObjectMapper = new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT)
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mapper.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES,false)
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@BeforeEach
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@ -47,18 +43,28 @@ class ScholixGraphTest extends AbstractVocabularyTest{
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assertEquals(result.size, items.size)
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val d = result.find(s => s.getLocalIdentifier.asScala.exists(i => i.getUrl == null || i.getUrl.isEmpty))
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assertFalse(d.isDefined)
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println(mapper.writeValueAsString(result.head))
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}
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@Test
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def testScholixMergeOnSource():Unit = {
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val inputRelations = Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/graph/merge_result_scholix")).mkString
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val result:List[(Relation,ScholixSummary)] =inputRelations.lines.sliding(2).map(s => (s.head, s(1))).map(p => (mapper.readValue(p._1, classOf[Relation]),mapper.readValue(p._2, classOf[ScholixSummary]) )).toList
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assertNotNull(result)
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assertTrue(result.nonEmpty)
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result.foreach(r => assertEquals(r._1.getSource, r._2.getId))
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val scholix:List[Scholix] = result.map(r => ScholixUtils.scholixFromSource(r._1, r._2))
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println(mapper.writeValueAsString(scholix.head))
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}
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@Test
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def testScholixRelationshipsClean() = {
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def testScholixRelationshipsClean(): Unit = {
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val inputRelations = Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/graph/relation_transform.json")).mkString
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implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
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@ -66,17 +72,9 @@ class ScholixGraphTest extends AbstractVocabularyTest{
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val l:List[String] =json.extract[List[String]]
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assertNotNull(l)
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assertTrue(l.nonEmpty)
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val relVocbaulary =ScholixUtils.relations
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l.foreach(r => assertTrue(relVocbaulary.contains(r.toLowerCase)))
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}
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@ -0,0 +1,20 @@
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