michele.artini
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dnet-hadoop
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aligned with origin/master, aligned model and mapping

This commit is contained in:
Michele Artini 2020-02-17 10:40:53 +01:00
parent 80cb52593f a3d0b57b25
commit 176c5606bd
29 changed files with 137 additions and 435 deletions
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2
.gitignore vendored
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@ -1,6 +1,8 @@
.DS_Store
.idea
*.iml
*.ipr
*.iws
*~
.classpath
/*/.classpath

2
dhp-build/dhp-build-assembly-resources/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp-build</artifactId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
</parent>
<artifactId>dhp-build-assembly-resources</artifactId>

2
dhp-build/dhp-build-properties-maven-plugin/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp-build</artifactId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
</parent>
<artifactId>dhp-build-properties-maven-plugin</artifactId>

2
dhp-build/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp</artifactId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
</parent>
<artifactId>dhp-build</artifactId>
<packaging>pom</packaging>

2
dhp-common/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp</artifactId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
<relativePath>../</relativePath>
</parent>

2
dhp-schemas/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp</artifactId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
<relativePath>../</relativePath>
</parent>

118
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/dli/Entity.java
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@ -1,118 +0,0 @@
package eu.dnetlib.dhp.schema.dli;
import java.io.Serializable;
import java.util.List;
public class Entity implements Serializable {
private String identifier;
private List<Pid> pid;
private List<String> title;
private List<String> date;
private String typology;
private List<String> authors;
private List<Subject> subject;
private String description;
private String completionStatus;
private List<Provenance> collectedFrom;
private List<String> publisher;
public String getIdentifier() {
return identifier;
}
public void setIdentifier(String identifier) {
this.identifier = identifier;
}
public List<Pid> getPid() {
return pid;
}
public void setPid(List<Pid> pid) {
this.pid = pid;
}
public List<String> getTitle() {
return title;
}
public void setTitle(List<String> title) {
this.title = title;
}
public List<String> getDate() {
return date;
}
public void setDate(List<String> date) {
this.date = date;
}
public String getTypology() {
return typology;
}
public void setTypology(String typology) {
this.typology = typology;
}
public List<String> getAuthors() {
return authors;
}
public void setAuthors(List<String> authors) {
this.authors = authors;
}
public List<Subject> getSubject() {
return subject;
}
public void setSubject(List<Subject> subject) {
this.subject = subject;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public List<Provenance> getCollectedFrom() {
return collectedFrom;
}
public void setCollectedFrom(List<Provenance> collectedFrom) {
this.collectedFrom = collectedFrom;
}
public List<String> getPublisher() {
return publisher;
}
public void setPublisher(List<String> publisher) {
this.publisher = publisher;
}
public String getCompletionStatus() {
return completionStatus;
}
public void setCompletionStatus(String completionStatus) {
this.completionStatus = completionStatus;
}
}

33
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/dli/Pid.java
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@ -1,33 +0,0 @@
package eu.dnetlib.dhp.schema.dli;
import eu.dnetlib.dhp.utils.DHPUtils;
import org.apache.commons.lang3.StringUtils;
public class Pid {
private String pid;
private String pidType;
public String getPid() {
return pid;
}
public void setPid(String pid) {
this.pid = pid;
}
public String getPidType() {
return pidType;
}
public void setPidType(String pidType) {
this.pidType = pidType;
}
public String generateId() {
if(StringUtils.isEmpty(pid) || StringUtils.isEmpty(pidType))
return null;
return DHPUtils.md5(String.format("%s::%s", pid, pidType));
}
}

35
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/dli/Provenance.java
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@ -1,35 +0,0 @@
package eu.dnetlib.dhp.schema.dli;
public class Provenance {
private String datasourceId;
private String datasourceName;
private String completionStatus;
public String getDatasourceId() {
return datasourceId;
}
public void setDatasourceId(String datasourceId) {
this.datasourceId = datasourceId;
}
public String getDatasourceName() {
return datasourceName;
}
public void setDatasourceName(String datasourceName) {
this.datasourceName = datasourceName;
}
public String getCompletionStatus() {
return completionStatus;
}
public void setCompletionStatus(String completionStatus) {
this.completionStatus = completionStatus;
}
}

52
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/dli/Relation.java
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@ -1,52 +0,0 @@
package eu.dnetlib.dhp.schema.dli;
import java.io.Serializable;
import java.util.List;
public class Relation implements Serializable {
/**
*
*/
private static final long serialVersionUID = -9103706796710618813L;
private String source;
private String target;
private List<Provenance> provenance;
private RelationSemantic semantic;
public String getSource() {
return source;
}
public void setSource(final String source) {
this.source = source;
}
public String getTarget() {
return target;
}
public void setTarget(final String target) {
this.target = target;
}
public List<Provenance> getProvenance() {
return provenance;
}
public void setProvenance(final List<Provenance> provenance) {
this.provenance = provenance;
}
public RelationSemantic getSemantic() {
return semantic;
}
public void setSemantic(final RelationSemantic semantic) {
this.semantic = semantic;
}
}

16
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/dli/RelationSemantic.java
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@ -1,16 +0,0 @@
package eu.dnetlib.dhp.schema.dli;
import java.io.Serializable;
public class RelationSemantic extends Subject implements Serializable {
public String inverse;
public String getInverse() {
return inverse;
}
public void setInverse(String inverse) {
this.inverse = inverse;
}
}

35
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/dli/Subject.java
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@ -1,35 +0,0 @@
package eu.dnetlib.dhp.schema.dli;
import java.io.Serializable;
public class Subject implements Serializable {
private String schema;
private String value;
public Subject() {
}
public Subject(String schema, String value) {
this.schema = schema;
this.value = value;
}
public String getSchema() {
return schema;
}
public void setSchema(String schema) {
this.schema = schema;
}
public String getValue() {
return value;
}
public void setValue(String value) {
this.value = value;
}
}

15
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Country.java Normal file
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@ -0,0 +1,15 @@
package eu.dnetlib.dhp.schema.oaf;
public class Country extends Qualifier {
private DataInfo dataInfo;
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
}
}

37
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Instance.java
View File

@ -1,6 +1,7 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
public class Instance implements Serializable {
@ -12,7 +13,7 @@ public class Instance implements Serializable {
private KeyValue hostedby;
private String url;
private List<String> url;
// other research products specifc
private String distributionlocation;
@ -21,6 +22,14 @@ public class Instance implements Serializable {
private Field<String> dateofacceptance;
// ( article | book ) processing charges. Defined here to cope with possible wrongly typed results
private Field<String> processingchargeamount;
// currency - alphabetic code describe in ISO-4217. Defined here to cope with possible wrongly typed results
private Field<String> processingchargecurrency;
private Field<String> refereed; //peer-review status
public Field<String> getLicense() {
return license;
}
@ -53,11 +62,11 @@ public class Instance implements Serializable {
this.hostedby = hostedby;
}
public String getUrl() {
public List<String> getUrl() {
return url;
}
public void setUrl(String url) {
public void setUrl(List<String> url) {
this.url = url;
}
@ -85,7 +94,29 @@ public class Instance implements Serializable {
this.dateofacceptance = dateofacceptance;
}
public Field<String> getProcessingchargeamount() {
return processingchargeamount;
}
public void setProcessingchargeamount(Field<String> processingchargeamount) {
this.processingchargeamount = processingchargeamount;
}
public Field<String> getProcessingchargecurrency() {
return processingchargecurrency;
}
public void setProcessingchargecurrency(Field<String> processingchargecurrency) {
this.processingchargecurrency = processingchargecurrency;
}
public Field<String> getRefereed() {
return refereed;
}
public void setRefereed(Field<String> refereed) {
this.refereed = refereed;
}
public String toComparableString(){
return String.format("%s::%s::%s::%s",

57
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Result.java
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@ -1,10 +1,8 @@
package eu.dnetlib.dhp.schema.oaf;
import org.apache.commons.lang3.StringUtils;
import java.io.Serializable;
import java.util.*;
import java.util.stream.Collectors;
import java.util.Comparator;
import java.util.List;
public abstract class Result extends OafEntity implements Serializable {
@ -16,7 +14,7 @@ public abstract class Result extends OafEntity implements Serializable {
// common fields
private Qualifier language;
private List<Qualifier> country;
private List<Country> country;
private List<StructuredProperty> subject;
@ -44,16 +42,10 @@ public abstract class Result extends OafEntity implements Serializable {
private List<Field<String>> coverage;
private Field<String> refereed; //peer-review status
private Qualifier bestaccessright;
private List<Context> context;
// ( article | book ) processing charges. Defined here to cope with possible wrongly typed results
private Field<String> processingchargeamount;
// currency - alphabetic code describe in ISO-4217. Defined here to cope with possible wrongly typed results
private Field<String> processingchargecurrency;
private List<ExternalReference> externalReference;
private List<Instance> instance;
@ -82,11 +74,11 @@ public abstract class Result extends OafEntity implements Serializable {
this.language = language;
}
public List<Qualifier> getCountry() {
public List<Country> getCountry() {
return country;
}
public void setCountry(List<Qualifier> country) {
public void setCountry(List<Country> country) {
this.country = country;
}
@ -194,12 +186,12 @@ public abstract class Result extends OafEntity implements Serializable {
this.coverage = coverage;
}
public Field<String> getRefereed() {
return refereed;
public Qualifier getBestaccessright() {
return bestaccessright;
}
public void setRefereed(Field<String> refereed) {
this.refereed = refereed;
public void setBestaccessright(Qualifier bestaccessright) {
this.bestaccessright = bestaccessright;
}
public List<Context> getContext() {
@ -226,24 +218,6 @@ public abstract class Result extends OafEntity implements Serializable {
this.instance = instance;
}
public Field<String> getProcessingchargeamount() {
return processingchargeamount;
}
public Result setProcessingchargeamount(Field<String> processingchargeamount) {
this.processingchargeamount = processingchargeamount;
return this;
}
public Field<String> getProcessingchargecurrency() {
return processingchargecurrency;
}
public Result setProcessingchargecurrency(Field<String> processingchargecurrency) {
this.processingchargecurrency = processingchargecurrency;
return this;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
@ -287,19 +261,9 @@ public abstract class Result extends OafEntity implements Serializable {
coverage = mergeLists(coverage, r.getCoverage());
if (r.getRefereed() != null && compareTrust(this, r) < 0)
refereed = r.getRefereed();
context = mergeLists(context, r.getContext());
if (r.getProcessingchargeamount() != null && compareTrust(this, r) < 0)
processingchargeamount = r.getProcessingchargeamount();
if (r.getProcessingchargecurrency() != null && compareTrust(this, r) < 0)
processingchargecurrency = r.getProcessingchargecurrency();
externalReference = mergeLists(externalReference, r.getExternalReference());
}
@ -314,5 +278,4 @@ public abstract class Result extends OafEntity implements Serializable {
return a.size() > b.size() ? a : b;
}
}

2
dhp-workflows/dhp-aggregation/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp-workflows</artifactId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
</parent>
<artifactId>dhp-aggregation</artifactId>

3
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/migration/AbstractMongoExecutor.java
View File

@ -262,12 +262,9 @@ public abstract class AbstractMongoExecutor extends AbstractMigrationExecutor {
r.setContributor(prepareContributors(doc, info));
r.setResourcetype(prepareResourceType(doc, info));
r.setCoverage(prepareCoverages(doc, info));
r.setRefereed(null); // NOT PRESENT IN MDSTORES
r.setContext(new ArrayList<>()); // NOT PRESENT IN MDSTORES
r.setExternalReference(new ArrayList<>()); // NOT PRESENT IN MDSTORES
r.setInstance(prepareInstances(doc, info, collectedFrom, hostedBy));
r.setProcessingchargeamount(null); // NOT PRESENT IN MDSTORES
r.setProcessingchargecurrency(null); // NOT PRESENT IN MDSTORES
}
protected abstract Qualifier prepareResourceType(Document doc, DataInfo info);

5
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/migration/OafMigrationExecutor.java
View File

@ -104,7 +104,7 @@ public class OafMigrationExecutor extends AbstractMongoExecutor {
final String url = ((Node) o).getText().trim();
if (url.startsWith("http")) {
final Instance instance = new Instance();
instance.setUrl(url);
instance.setUrl(Arrays.asList(url));
instance.setInstancetype(prepareQualifier(doc, "//dr:CobjCategory", "dnet:publication_resource", "dnet:publication_resource"));
instance.setCollectedfrom(collectedfrom);
instance.setHostedby(hostedby);
@ -112,6 +112,9 @@ public class OafMigrationExecutor extends AbstractMongoExecutor {
instance.setDistributionlocation(doc.valueOf("//oaf:distributionlocation"));
instance.setAccessright(prepareQualifier(doc, "//oaf:accessrights", "dnet:access_modes", "dnet:access_modes"));
instance.setLicense(field(doc.valueOf("//oaf:license"), info));
instance.setRefereed(field(doc.valueOf("//oaf:refereed"), info));
instance.setProcessingchargeamount(field(doc.valueOf("//oaf:processingchargeamount"), info));
instance.setProcessingchargecurrency(field(doc.valueOf("//oaf:processingchargeamount/@currency"), info));
res.add(instance);
}
}

5
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/migration/OdfMigrationExecutor.java
View File

@ -74,7 +74,7 @@ public class OdfMigrationExecutor extends AbstractMongoExecutor {
final List<Instance> res = new ArrayList<>();
for (final Object o : doc.selectNodes("//dc:alternateIdentifier[@alternateIdentifierType='URL']")) {
final Instance instance = new Instance();
instance.setUrl(((Node) o).getText().trim());
instance.setUrl(Arrays.asList(((Node) o).getText().trim()));
instance.setInstancetype(prepareQualifier(doc, "//dr:CobjCategory", "dnet:publication_resource", "dnet:publication_resource"));
instance.setCollectedfrom(collectedfrom);
instance.setHostedby(hostedby);
@ -82,6 +82,9 @@ public class OdfMigrationExecutor extends AbstractMongoExecutor {
instance.setDistributionlocation(doc.valueOf("//oaf:distributionlocation"));
instance.setAccessright(prepareQualifier(doc, "//oaf:accessrights", "dnet:access_modes", "dnet:access_modes"));
instance.setLicense(field(doc.valueOf("//oaf:license"), info));
instance.setRefereed(field(doc.valueOf("//oaf:refereed"), info));
instance.setProcessingchargeamount(field(doc.valueOf("//oaf:processingchargeamount"), info));
instance.setProcessingchargecurrency(field(doc.valueOf("//oaf:processingchargeamount/@currency"), info));
res.add(instance);
}
return res;

5
dhp-workflows/dhp-dedup/pom.xml
View File

@ -1,10 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<parent>
<artifactId>dhp-workflows</artifactId>
<groupId>eu.dnetlib.dhp</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>

40
dhp-workflows/dhp-dedup/src/main/java/eu/dnetlib/dedup/SparkCreateSimRels.java
View File

@ -1,7 +1,6 @@
package eu.dnetlib.dedup;
import eu.dnetlib.dedup.graph.ConnectedComponent;
import eu.dnetlib.dedup.graph.GraphProcessor;
import com.google.common.hash.Hashing;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.pace.config.DedupConfig;
@ -12,8 +11,6 @@ import org.apache.spark.api.java.JavaPairRDD;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.api.java.function.PairFunction;
import org.apache.spark.graphx.Edge;
import org.apache.spark.rdd.RDD;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SparkSession;
import scala.Tuple2;
@ -44,30 +41,23 @@ public class SparkCreateSimRels {
final String inputPath = parser.get("sourcePath");
final String entity = parser.get("entity");
final String targetPath = parser.get("targetPath");
// final DedupConfig dedupConf = DedupConfig.load(IOUtils.toString(SparkCreateSimRels.class.getResourceAsStream("/eu/dnetlib/dhp/dedup/conf/org.curr.conf2.json")));
// final DedupConfig dedupConf = DedupConfig.load(IOUtils.toString(SparkCreateSimRels.class.getResourceAsStream("/eu/dnetlib/dhp/dedup/conf/org.curr.conf.json")));
final DedupConfig dedupConf = DedupConfig.load(parser.get("dedupConf"));
final long total = sc.textFile(inputPath + "/" + entity).count();
JavaPairRDD<Object, MapDocument> vertexes = sc.textFile(inputPath + "/" + entity)
.map(s->{
JavaPairRDD<String, MapDocument> mapDocument = sc.textFile(inputPath + "/" + entity)
.mapToPair(s->{
MapDocument d = MapDocumentUtil.asMapDocumentWithJPath(dedupConf,s);
return new Tuple2<>(d.getIdentifier(), d);})
.mapToPair((PairFunction<Tuple2<String, MapDocument>, Object, MapDocument>) t -> new Tuple2<Object, MapDocument>((long) t._1().hashCode(), t._2()));
JavaPairRDD<String, MapDocument> mapDocument = vertexes.mapToPair((PairFunction<Tuple2<Object, MapDocument>, String, MapDocument>) item -> new Tuple2<String, MapDocument>(item._2().getIdentifier(), item._2()));
return new Tuple2<>(d.getIdentifier(), d);});
//create blocks for deduplication
JavaPairRDD<String, List<MapDocument>> blocks = Deduper.createsortedBlocks(sc,mapDocument, dedupConf);
JavaPairRDD<String, List<MapDocument>> blocks = Deduper.createsortedBlocks(sc, mapDocument, dedupConf);
// JavaPairRDD<String, Iterable<MapDocument>> blocks = Deduper.createBlocks(sc, mapDocument, dedupConf);
//create relations by comparing only elements in the same group
final JavaPairRDD<String,String> dedupRels = Deduper.computeRelations2(sc, blocks, dedupConf);
// final JavaPairRDD<String,String> dedupRels = Deduper.computeRelations(sc, blocks, dedupConf);
final JavaRDD<Relation> isSimilarToRDD = dedupRels.map(simRel -> {
final Relation r = new Relation();
@ -79,17 +69,5 @@ public class SparkCreateSimRels {
spark.createDataset(isSimilarToRDD.rdd(), Encoders.bean(Relation.class)).write().mode("overwrite").save( DedupUtility.createSimRelPath(targetPath,entity));
}
}
}

28
dhp-workflows/dhp-dedup/src/test/java/eu/dnetlib/dedup/SparkCreateDedupTest.java
View File

@ -18,11 +18,11 @@ import java.util.List;
public class SparkCreateDedupTest {
String configuration;
String entity = "publication";
String entity = "organization";
@Before
public void setUp() throws IOException {
configuration = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dedup/conf/pub_dt.curr.conf.json"));
configuration = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dedup/conf/org.curr.conf.json"));
}
@ -31,7 +31,7 @@ public class SparkCreateDedupTest {
public void createSimRelsTest() throws Exception {
SparkCreateSimRels.main(new String[] {
"-mt", "local[*]",
"-s", "/home/sandro/betadump",
"-s", "/Users/miconis/dumps",
"-e", entity,
"-c", ArgumentApplicationParser.compressArgument(configuration),
"-t", "/tmp/dedup",
@ -44,7 +44,7 @@ public class SparkCreateDedupTest {
SparkCreateConnectedComponent.main(new String[] {
"-mt", "local[*]",
"-s", "/home/sandro/betadump",
"-s", "/Users/miconis/dumps",
"-e", entity,
"-c", ArgumentApplicationParser.compressArgument(configuration),
"-t", "/tmp/dedup",
@ -56,7 +56,7 @@ public class SparkCreateDedupTest {
public void dedupRecordTest() throws Exception {
SparkCreateDedupRecord.main(new String[] {
"-mt", "local[*]",
"-s", "/home/sandro/betadump",
"-s", "/Users/miconis/dumps",
"-e", entity,
"-c", ArgumentApplicationParser.compressArgument(configuration),
"-d", "/tmp/dedup",
@ -64,26 +64,10 @@ public class SparkCreateDedupTest {
}
@Test
public void printCC() throws Exception {
public void printConfiguration() throws Exception {
System.out.println(ArgumentApplicationParser.compressArgument(configuration));
}
// [20|grid________::6031f94bef015a37783268ec1e75f17f, 20|nsf_________::b12be9edf414df8ee66b4c52a2d8da46]
// [20|grid________::672e1e5cef49e68f124d3da5225a7357, 20|grid________::7a402604c3853c7a0af14f88f56bf7e1]
// [20|grid________::2fc05b35e11d915b220a66356053eae2, 20|grid________::b02fb3176eb38f6c572722550c07e7ab]
// [20|grid________::bc86248ab2b8d7955dcaf592ba342262, 20|corda_______::45a8ec964029278fb938805182e247a8]
// [20|doajarticles::74551f800ad1c81a6cd31c5162887b7f, 20|rcuk________::86dc9a83df05a58917f38ca09f814617]
// [20|nsf_________::5e837d8e6444cc298db314ea54ad2f4a, 20|snsf________::7b54715f0ec5c6a0a44672f45d98be8d]
// [20|corda__h2020::7ee7e57bad06b92c1a568dd61e10ba8c, 20|snsf________::2d4a2695221a3ce0c749ee34e064c0b3]
// [20|corda_______::25220a523550176dac9e5432dac43596, 20|grid________::9782f16a46650cbbfaaa2315109507d1]
// [20|nih_________::88c3b664dcc7af9e827f94ac964cd66c, 20|grid________::238d3ac0a7d119d5c8342a647f5245f5]
// [20|rcuk________::0582c20fcfb270f9ec1b19b0f0dcd881, 20|nsf_________::9afa48ddf0bc2cd4f3c41dc41daabcdb]
// [20|rcuk________::fbc445f8d24e569bc8b640dba86ae978, 20|corda_______::5a8a4094f1b68a88fc56e65cea7ebfa0]
// [20|rcuk________::7485257cd5caaf6316ba8062feea801d, 20|grid________::dded811e5f5a4c9f7ca8f9955e52ade7]
// [20|nih_________::0576dd270d29d5b7c23dd15a827ccdb9, 20|corda_______::10ca69f6a4a121f75fdde1feee226ce0]
// [20|corda__h2020::0429f6addf10e9b2939d65c6fb097ffd, 20|grid________::6563ec73057624d5ccc0cd050b302181]
@Test
public void testHashCode() {
final String s1 = "20|grid________::6031f94bef015a37783268ec1e75f17f";

51
dhp-workflows/dhp-dedup/src/test/resources/eu/dnetlib/dedup/conf/org.curr.conf.json
View File

@ -7,9 +7,9 @@
"queueMaxSize" : "2000",
"groupMaxSize" : "50",
"slidingWindowSize" : "200",
"idPath":"$.id",
"rootBuilder" : [ "organization", "projectOrganization_participation_isParticipant", "datasourceOrganization_provision_isProvidedBy" ],
"includeChildren" : "true",
"idPath": "$.id",
"maxIterations": "20"
},
"pace" : {
@ -31,7 +31,7 @@
}
],
"threshold": 1,
"aggregation": "SC",
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "layer2",
@ -52,10 +52,24 @@
"weight": 1,
"countIfUndefined": "true",
"params": {}
},
{
"field": "legalname",
"comparator": "numbersMatch",
"weight": 1,
"countIfUndefined": "true",
"params": {}
},
{
"field": "legalname",
"comparator": "romansMatch",
"weight": 1,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 1,
"aggregation": "NC",
"aggregation": "AND",
"positive": "layer3",
"negative": "NO_MATCH",
"undefined": "layer3",
@ -69,12 +83,11 @@
"weight": 1.0,
"countIfUndefined": "true",
"params": {
"windowSize": "4",
"threshold": "0.0"
"windowSize": "4"
}
}
],
"threshold": 1.0,
"threshold": 0.7,
"aggregation": "W_MEAN",
"positive": "layer4",
"negative": "NO_MATCH",
@ -87,19 +100,18 @@
"field": "legalname",
"comparator": "keywordMatch",
"weight": 1.0,
"countIfUndefined": "false",
"countIfUndefined": "true",
"params": {
"windowSize": "4",
"threshold": "0.7"
"windowSize": "4"
}
}
],
"threshold": 1.0,
"aggregation": "W_MEAN",
"threshold": 0.9,
"aggregation": "AVG",
"positive": "layer5",
"negative": "NO_MATCH",
"undefined": "layer5",
"ignoreUndefined": "false"
"ignoreUndefined": "true"
},
"layer5": {
"fields": [
@ -133,19 +145,20 @@
{ "name" : "legalshortname", "type" : "String", "path" : "$.legalshortname.value"},
{ "name" : "legalname", "type" : "String", "path" : "$.legalname.value" },
{ "name" : "websiteurl", "type" : "URL", "path" : "$.websiteurl.value" },
{ "name" : "gridid", "type" : "String", "path" : "$.pid[?(@.qualifier.classid ==\"grid\")].value"}
{ "name" : "gridid", "type" : "String", "path" : "$.pid[?(@.qualifier.classid =='grid.ac')].value"},
{ "name" : "originalId", "type" : "String", "path" : "$.id" }
],
"blacklists" : {
"legalname" : []
},
"synonyms": {
"key::1": ["university","università","università studi","universitario","universitaria","université","universitaire","universitaires","universidad","universitade","Universität","universitaet","Uniwersytet","университет","universiteit","πανεπιστήμιο","universitesi","universiteti", "universiti"],
"key::1": ["university","università","università studi","universitario","universitaria","université", "universite", "universitaire","universitaires","universidad","universitade","Universität","universitaet","Uniwersytet","университет","universiteit","πανεπιστήμιο","universitesi","universiteti", "universiti"],
"key::2": ["studies","studi","études","estudios","estudos","Studien","studia","исследования","studies","σπουδές"],
"key::3": ["advanced","superiore","supérieur","supérieure","supérieurs","supérieures","avancado","avancados","fortgeschrittene","fortgeschritten","zaawansowany","передовой","gevorderd","gevorderde","προχωρημένος","προχωρημένη","προχωρημένο","προχωρημένες","προχωρημένα","wyzsza"],
"key::4": ["institute","istituto","institut","instituto","instituto","Institut","instytut","институт","instituut","ινστιτούτο"],
"key::5": ["hospital","ospedale","hôpital","hospital","hospital","Krankenhaus","szpital","больница","ziekenhuis","νοσοκομείο"],
"key::6": ["research","ricerca","recherche","investigacion","pesquisa","Forschung","badania","исследования","onderzoek","έρευνα","erevna","erevnas"],
"key::7": ["college","collegio","université","colegio","faculdade","Hochschule","Szkoła Wyższa","Высшая школа","universiteit","κολλέγιο"],
"key::7": ["college","collegio","colegio","faculdade","Hochschule","Szkoła Wyższa","Высшая школа","κολλέγιο"],
"key::8": ["foundation","fondazione","fondation","fundación","fundação","Stiftung","Fundacja","фонд","stichting","ίδρυμα","idryma"],
"key::9": ["center","centro","centre","centro","centro","zentrum","centrum","центр","centrum","κέντρο"],
"key::10": ["national","nazionale","national","nationale","nationaux","nationales","nacional","nacional","national","krajowy","национальный","nationaal","nationale","εθνικό"],
@ -233,7 +246,7 @@
"key::92": ["automation","automazione","automatización","automação","Automatisierung","automatisering","αυτοματοποίηση","otomasyon","automatizálás","avtomatizacija","automatiseeritud",""],
"key::93": ["pediatric","pediatria","pediatriche","pediatrico","pediátrico","pediatría","pediátrico","pediatria","pädiatrisch","pediatrische","παιδιατρική","pediatrik","gyermekgyógyászat","pediatrija","pediaatria",""],
"key::94": ["photonics","fotonica","fotoniche","fotónica","fotônica","Photonik","fotonica","φωτονική","fotonik","fotonika","fotonika","fotoonika",""],
"key::95": ["mechanics","meccanica","meccaniche","mecánica","mecânica","Mechanik","Maschinenbau","mechanica","werktuigkunde","μηχανικής","mekanik","gépészet","mehanika","mehaanika",""],
"key::95": ["mechanics", "mechanical", "meccanica","meccaniche","mecánica","mecânica","Mechanik","Maschinenbau","mechanica","werktuigkunde","μηχανικής","mekanik","gépészet","mehanika","mehaanika",""],
"key::96": ["psychiatrics","psichiatria","psichiatrica","psichiatriche","psiquiatría","psiquiatria","Psychiatrie","psychiatrie","ψυχιατρική","psikiyatrik","pszihiátria","psihiatrija","psühhaatria",""],
"key::97": ["psychology","fisiologia","psicología","psicologia","Psychologie","psychologie","ψυχολογία","psikoloji","pszihológia","psihologija","psühholoogia",""],
"key::98": ["automotive","industriaautomobilistica","industriadelautomóvil","automotriz","industriaautomotriz","automotivo","Automobilindustrie","autoindustrie","αυτοκίνητος","αυτοκίνητη","αυτοκίνητο","αυτοκινούμενος","αυτοκινούμενη","αυτοκινούμενο","αυτοκινητιστικός","αυτοκινητιστική","αυτοκινητιστικό","otomotiv","autóipari","samogiben","avtomobilskaindustrija","auto-",""],
@ -243,7 +256,11 @@
"key::102": ["informatics","informatica","informática","informática","informatica",""],
"key::103": ["forschungsgemeinschaft","comunita ricerca","research community","research foundation","research association"],
"key::104": ["commerce","ticaret","ticarət","commercio","trade","handel","comercio"],
"key::105" : ["state", "stato", "etade", "statale", "etat", "zustand", "estado"]
"key::105" : ["state", "stato", "etade", "estado", "statale", "etat", "zustand", "estado"],
"key::106" : ["seminary", "seminario", "seminaire", "seminar"],
"key::107" : ["agricultural forestry", "af", "a f"],
"key::108" : ["agricultural mechanical", "am", "a m"],
"key::109" : ["catholic", "catholique", "katholische", "catolica", "cattolica", "catolico"]
}
}
}

9
dhp-workflows/dhp-dedup/src/test/resources/eu/dnetlib/dedup/conf/pub_dt.curr.conf.json
View File

@ -66,14 +66,13 @@
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"threshold": "0.5",
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid"
}
}
],
"threshold": 1.0,
"aggregation": "MAX",
"threshold": 0.5,
"aggregation": "AVG",
"positive": "MATCH",
"negative": "layer2",
"undefined": "layer2",
@ -97,7 +96,7 @@
}
],
"threshold": 1.0,
"aggregation": "NC",
"aggregation": "AND",
"positive": "layer3",
"negative": "NO_MATCH",
"undefined": "layer3",
@ -114,7 +113,7 @@
}
],
"threshold": 0.99,
"aggregation": "SUM",
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",

6
dhp-workflows/dhp-dedup/src/test/resources/eu/dnetlib/dedup/json/authors_merge.json
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File diff suppressed because one or more lines are too long

2
dhp-workflows/dhp-distcp/pom.xml
View File

@ -3,7 +3,7 @@
<parent>
<artifactId>dhp-workflows</artifactId>
<groupId>eu.dnetlib.dhp</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>

2
dhp-workflows/dhp-graph-mapper/pom.xml
View File

@ -3,7 +3,7 @@
<parent>
<artifactId>dhp-workflows</artifactId>
<groupId>eu.dnetlib.dhp</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>

2
dhp-workflows/pom.xml
View File

@ -6,7 +6,7 @@
<parent>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp</artifactId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
<relativePath>../</relativePath>
</parent>

2
pom.xml
View File

@ -5,7 +5,7 @@
<modelVersion>4.0.0</modelVersion>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp</artifactId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.6-SNAPSHOT</version>
<packaging>pom</packaging>
<url>http://www.d-net.research-infrastructures.eu</url>