dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/graph/SparkGraphImporterJob.java

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2019-10-24 16:00:28 +02:00
package eu.dnetlib.dhp.graph;
import eu.dnetlib.dhp.schema.oaf.Publication;
import org.apache.hadoop.io.Text;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.sql.SparkSession;
import scala.Tuple2;
public class SparkGraphImporterJob {
public static void main(String[] args) throws Exception{
//TODO add argument parser
// final ArgumentApplicationParser parser = new ArgumentApplicationParser(IOUtils.toString(SparkGraphImporterJob.class.getResourceAsStream("/eu/dnetlib/dhp/graph/graph_importer_parameters.json")));
// parser.parseArgument(args);
final SparkSession spark = SparkSession
.builder()
.appName("ImportGraph")
//TODO replace with: master(parser.get("master"))
.master("local[16]")
.getOrCreate();
final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
final JavaRDD<Tuple2<String, String>> inputRDD = sc.sequenceFile("file:///home/sandro/part-m-02236", Text.class, Text.class).map(item -> new Tuple2<>(item._1.toString(), item._2.toString()));
final long totalPublication = inputRDD
.filter(s -> s._1().split("@")[2].equalsIgnoreCase("body"))
.map(Tuple2::_2)
.map(ProtoConverter::convert)
.filter(s -> s instanceof Publication)
.count();
System.out.println(totalPublication);
}
}