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195 Commits

Author SHA1 Message Date
Miriam Baglioni 804589eb30 reverting 2021-08-11 17:23:35 +02:00
Miriam Baglioni d688749ad9 reverting 2021-08-11 17:22:28 +02:00
Miriam Baglioni 524c06e028 reverting 2021-08-11 17:20:30 +02:00
Miriam Baglioni 7aa3260729 reverting 2021-08-11 17:18:45 +02:00
Miriam Baglioni 55fc500d8d reverting 2021-08-11 17:17:48 +02:00
Miriam Baglioni 8da3a25cf6 merging with branch beta 2021-08-11 15:55:34 +02:00
Claudio Atzori 61d811ba53 suggestions from intellij 2021-08-11 12:18:20 +02:00
Claudio Atzori 2ee21da43b suggestions from SonarLint 2021-08-11 12:13:22 +02:00
Miriam Baglioni 708d0ade34 Merge branch 'beta' into hostedbymap 2021-07-28 10:37:22 +02:00
Sandro La Bruzzo 825d9f0289 fixed datacite workflow starting from Importing delta 2021-07-27 16:09:46 +02:00
Miriam Baglioni 74f801b689 mergin with branch beta 2021-07-27 13:18:31 +02:00
Miriam Baglioni eb07f7f40f Hosted By Map 2021-07-27 12:27:26 +02:00
Sandro La Bruzzo 62ae36a3d2 fixed NPE 2021-07-22 15:41:38 +02:00
Sandro La Bruzzo bbe8193930 merged stable ids 2021-07-12 17:00:43 +02:00
Andreas Czerniak ebf3f47a02 from&until more OAI2.0 compl., adding tfs 2021-07-07 09:29:49 +02:00
Sandro La Bruzzo 507e42102a added pdb to oaf class 2021-06-21 09:36:40 +02:00
Sandro La Bruzzo cc0f2b11fb Implemented mapping from pubmed baseline to OAF 2021-06-16 14:56:24 +02:00
Sandro La Bruzzo aeb8132627 Merged branch stable_ids 2021-06-14 10:07:29 +02:00
Claudio Atzori a900bfb874 delegating the date parsing to https://github.com/sisyphsu/dateparser 2021-06-11 16:53:01 +02:00
Sandro La Bruzzo 5b724d9972 added relations to datacite mapping 2021-06-04 10:14:22 +02:00
Claudio Atzori d512062b58 integrating pull #109, H2020Classification 2021-05-27 12:22:47 +02:00
Miriam Baglioni abd88f663d changed test resource to mirror change in the input file 2021-05-21 15:20:47 +02:00
Miriam Baglioni 53b9d87fec new prepareProgramme according to the new file 2021-05-21 11:49:31 +02:00
Miriam Baglioni 052c837843 - 2021-05-20 15:54:44 +02:00
Claudio Atzori b695932ae4 integrated pull#108 2021-05-20 15:34:04 +02:00
Claudio Atzori 239d0f0a9a ROR actionset import workflow backported from branch stable_ids 2021-05-18 16:12:11 +02:00
Claudio Atzori 23b8883ab1 applied intellij code cleanup 2021-05-14 10:58:12 +02:00
Sandro La Bruzzo 6424cd9062 Added passing of the following parameters: 
-varDataSourceId
-varOfficialName

in Each transformation Rule
 2021-05-11 15:17:38 +02:00
Sandro La Bruzzo 073dcea2aa Added passing of the following parameters: 
-varDataSourceId
-varOfficialName

in Each transformation Rule
 2021-05-11 15:05:58 +02:00
Claudio Atzori 3797543600 MDStoreManager model classes moved in dhp-schemas 2021-05-10 14:32:05 +02:00
Michele Artini a278d67175 parse input file 2021-04-29 11:34:47 +02:00
Michele Artini f77ba34126 pid types 2021-04-29 09:50:05 +02:00
Michele Artini 7c5cd86927 annotations and tests 2021-04-29 09:29:19 +02:00
Claudio Atzori fa42026590 fixed PersonCleaner extension functions 2021-04-27 10:10:06 +02:00
Sandro La Bruzzo dbe0d0378e resolved ticket #6377 2021-04-20 09:44:44 +02:00
Sandro La Bruzzo cdfe01bbae improved parallelization on transformation job 2021-04-19 15:14:52 +02:00
Claudio Atzori 3125cef545 code formatting 2021-04-14 09:11:54 +02:00
Andreas Czerniak 3b694074ff add xslt, personname cleaner 2021-04-13 07:04:27 +02:00
Sandro La Bruzzo 616d2ecce2 splitted workflow collecting datacite into two workflows. 
Released on beta
 2021-03-31 15:45:58 +02:00
Claudio Atzori 8db248aa13 avoiding error on jenkins compilations: java.net.BindException: Cannot assign requested address: Service 'sparkDriver' failed after 16 retries (on a random free port)! 2021-03-23 09:56:34 +01:00
Claudio Atzori acbe3119a4 RestCollectorPlugin imported from dne45 2021-03-08 09:44:09 +01:00
Claudio Atzori fa7930d2e2 merging contributions from PR#97 2021-03-05 15:45:28 +01:00
Claudio Atzori 36f750cd1d removed unused classes 2021-03-03 10:22:29 +01:00
Claudio Atzori e76c4f62c1 MetadataRecord moved in dhp-schemas 2021-02-26 10:58:48 +01:00
Claudio Atzori 271e88537b code formatting 2021-02-25 12:28:56 +01:00
Claudio Atzori 9c899f4433 cleanup on transformation functions and the relative tests 2021-02-24 15:07:59 +01:00
Claudio Atzori 1abe6d1ad7 WIP: collectorWorker error reporting, added report messages 2021-02-15 15:08:59 +01:00
Claudio Atzori 523a6bfa97 Merge pull request 'first commit to the correct branch' (#94) from andreas.czerniak/BrAggr_dnet-hadoop:hadoop_aggregator into hadoop_aggregator 
Looks good to me, thanks Andreas!
 2021-02-15 12:15:31 +01:00
Sandro La Bruzzo 7edcc87ed4 changed xslt behaviour on failure 2021-02-12 17:27:08 +01:00
Sandro La Bruzzo 6a37c7f175 merge fixed 2021-02-12 16:38:47 +01:00
Sandro La Bruzzo b3f5c2351d Merge branch 'hadoop_aggregator' of code-repo.d4science.org:D-Net/dnet-hadoop into hadoop_aggregator 
 Conflicts:
	dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/transformation/TransformationJobTest.java
 2021-02-12 16:37:14 +01:00
Sandro La Bruzzo f216277219 Implemented cleaning date 2021-02-12 16:34:52 +01:00
Andreas Czerniak 5a9017cf18 clone, min. changes, test, run 2021-02-12 14:32:36 +01:00
Claudio Atzori aa55dedb8a Merge branch 'hadoop_aggregator' of https://code-repo.d4science.org/D-Net/dnet-hadoop into hadoop_aggregator 2021-02-12 12:31:05 +01:00
Claudio Atzori 29c6f7e255 classes related to the collection workflow moved into common package; implemented MongoDB collection plugins 2021-02-12 12:31:02 +01:00
Sandro La Bruzzo 17e6f1934e fixed NPE on cleaner 2021-02-12 11:48:11 +01:00
Claudio Atzori 50add4c61b added requestDelay to HttpConnector2 configuration; Aggregation workflow constants moved in dhp-common 2021-02-08 12:19:38 +01:00
Claudio Atzori 40df0f987d better logging, WIP: collectorWorker error reporting; common functions moved in DHPUtils 2021-02-06 20:12:00 +01:00
Claudio Atzori a8a758925e better logging, WIP: collectorWorker error reporting 2021-02-05 19:18:05 +01:00
Claudio Atzori 730973679a Merge branch 'hadoop_aggregator' of https://code-repo.d4science.org/D-Net/dnet-hadoop into hadoop_aggregator 2021-02-04 17:25:00 +01:00
Claudio Atzori deb85706db imported HttpConnector from https://svn.driver.research-infrastructures.eu/driver/dnet45/modules/dnet-modular-collector-service/trunk/src/main/java/eu/dnetlib/data/collector/plugins/HttpConnector.java as HttpConnector2 2021-02-04 17:24:52 +01:00
Sandro La Bruzzo 4dae5e605d implemented messaging btween collection worker and Dnet 2021-02-04 15:51:15 +01:00
Claudio Atzori 40764cf626 better logging, WIP: collectorWorker error reporting 2021-02-04 14:06:02 +01:00
Sandro La Bruzzo 69c253710b fixed test 2021-02-04 10:30:49 +01:00
Claudio Atzori 0e8a4f9f1a better logging, WIP: collectorWorker error reporting 2021-02-03 12:33:41 +01:00
Claudio Atzori bb89b99b24 code formatting 2021-02-02 12:34:14 +01:00
Claudio Atzori 75807ea5ae factored out constants 2021-02-02 12:28:21 +01:00
Sandro La Bruzzo 0634674add implemented transformation test 2021-02-02 12:12:14 +01:00
Claudio Atzori 8eaa1fd4b4 WIP: metadata collection in INCREMENTAL mode and relative test 2021-02-01 19:29:10 +01:00
Sandro La Bruzzo 6ff234d81b Implemented a first prototype of incremental harvesting and trasformation using readlock 2021-02-01 13:56:05 +01:00
Sandro La Bruzzo 8ee82576c6 Collection on Refresh WORKS!!! 2021-01-29 17:02:46 +01:00
Sandro La Bruzzo 0276180039 WIP mdstore 
transaction implemented on hadoop side
 2021-01-29 16:42:41 +01:00
Sandro La Bruzzo 98b9498b57 Removed old messaging system not quite used from collection and Transformation workflow 
code refactor
 2021-01-28 09:51:17 +01:00
Sandro La Bruzzo 184e7b3856 Implemented new Transformation using spark 2021-01-27 15:43:08 +01:00
Sandro La Bruzzo ffb092b8d3 removed duplicate code HttpConnector.java 2021-01-25 15:05:37 +01:00
Claudio Atzori 41500669e2 [BIP! Scores integration] merged missing classes from bipFinder branch 2021-01-11 14:39:47 +01:00
Claudio Atzori 03319d3bd9 Revert "Merge pull request 'Creation of the action set to include the bipFinder! score' (#62) from miriam.baglioni/dnet-hadoop:bipFinder into master" 
This reverts commit add7e1693b, reversing
changes made to f9a8fd8bbd.
 2020-12-17 12:23:58 +01:00
Miriam Baglioni 5b3ed70808 refactoring 2020-12-01 14:31:34 +01:00
Miriam Baglioni 0051ebede5 extending test 2020-12-01 12:43:03 +01:00
Miriam Baglioni 719da15f04 added test resources 2020-12-01 12:42:30 +01:00
Miriam Baglioni db36e11912 classes test classes and resources for production of the actionset to include bipFinder score in results 2020-11-30 20:14:23 +01:00
Sandro La Bruzzo 66efb39634 implemented merge scholix 2020-11-04 09:04:01 +01:00
Miriam Baglioni 4905739be6 changed resource file to mirror change in business logic 2020-10-30 17:02:57 +01:00
Miriam Baglioni b40360ebfb changed the code to mirror the changed decision in the classification level and prodramme description labels 2020-10-30 17:02:30 +01:00
Miriam Baglioni 696409fb9f disabled tests because needing remote resource 2020-10-30 17:01:48 +01:00
Miriam Baglioni a2ce527fae changed to match the requirements for short titles in level and long titles in classification 2020-10-20 17:03:25 +02:00
Miriam Baglioni 61946b4092 refactoring 2020-10-01 16:22:48 +02:00
Miriam Baglioni 7e6d35e56c added the link to the excel file related to topic 2020-10-01 15:53:31 +02:00
Miriam Baglioni 632351c0da modified test resources to mirror the changed in the code 2020-10-01 15:43:02 +02:00
Miriam Baglioni ebc1c5513f modified test resources to mirror the changed in the code 2020-10-01 15:42:29 +02:00
Miriam Baglioni 83ea746163 added check to the test 2020-10-01 15:40:28 +02:00
Miriam Baglioni a46179f61c refactoring 2020-10-01 11:22:01 +02:00
Miriam Baglioni c107f193c9 refactoring 2020-10-01 11:16:22 +02:00
Miriam Baglioni 706a80a29a added test to check that separator '-' (not hyphen) will be recognized 2020-10-01 10:38:31 +02:00
Miriam Baglioni 3dca586b3b refactoring 2020-10-01 10:34:48 +02:00
Miriam Baglioni f4739a371a code to get the information related to the topic association between code and description. 2020-09-28 12:02:48 +02:00
Miriam Baglioni 12c2dfc268 modified the resource to consider the information added to the model 2020-09-25 14:17:23 +02:00
Miriam Baglioni 969fa8d96e fixed issue and changed the transformation of the programme file to consider the new model 2020-09-25 13:32:34 +02:00
Miriam Baglioni e917281822 - 2020-09-24 15:24:05 +02:00
Miriam Baglioni 1d84cf19a6 added new line to resource file 2020-09-23 17:32:22 +02:00