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2818 Commits

Author SHA1 Message Date
Claudio Atzori f468c7f0d7 merged from master 2021-03-09 09:12:41 +01:00
Claudio Atzori 76441f4edd code formatting 2021-03-09 09:12:26 +01:00
Claudio Atzori 8d2bb24512 merged from master 2021-03-08 15:44:34 +01:00
Claudio Atzori acbe3119a4 RestCollectorPlugin imported from dne45 2021-03-08 09:44:09 +01:00
Antonis Lempesis f40c150a0d fixed steps... 2021-03-06 00:35:57 +02:00
Claudio Atzori fa7930d2e2 merging contributions from PR#97 2021-03-05 15:45:28 +01:00
Antonis Lempesis 6147ee4950 assigning correctly hive contexts to concepts 2021-03-05 14:12:18 +02:00
Antonis Lempesis c5fbad8093 Contexts are now downloaded instead of using the stats_ext db 2021-03-04 00:42:21 +02:00
Claudio Atzori 55f6ff5f55 README.md for aggregation workflows 2021-03-03 16:18:34 +01:00
Claudio Atzori e8789b0cdb Merge pull request 'stats DB for monitor' (#99) from antonis.lempesis/dnet-hadoop:master into master 
Looks good to me, just a note on the parsing of the citations: since the last version, IIS produces citations as proper relationships among results. This is what we got already in the BETA graph

```
count		r.reltype	r.subreltype	r.relclass
62.129.254	resultResult	citation	cites
62.043.309	resultResult	citation	isCitedBy
```

Thus, I suggest to move away from the current property based implementation for the extraction of the citation links and start relying on the relationships instead.
 2021-03-03 10:29:09 +01:00
Claudio Atzori ec80b7ade3 code formatting 2021-03-03 10:22:53 +01:00
Claudio Atzori 36f750cd1d removed unused classes 2021-03-03 10:22:29 +01:00
Claudio Atzori b73dce3e3a more logging on the MDStore mongodb client. Forcing UTF_8 encoding on the content 2021-03-03 10:17:16 +01:00
Antonis Lempesis 27796343ca crude sleep. hardcoded value 2021-03-03 01:37:47 +02:00
Enrico Ottonello 20c0438f11 reformatted code after compile step 2021-03-01 11:07:01 +01:00
Enrico Ottonello 70cb100647 added updating last orcid dataset folders after completion 2021-03-01 10:17:04 +01:00
Enrico Ottonello bd3b16402b added result typologies 2021-03-01 10:16:02 +01:00
Claudio Atzori e76c4f62c1 MetadataRecord moved in dhp-schemas 2021-02-26 10:58:48 +01:00
miconis 1a85020572 bug fix in graph-mapper, changes in the implementation of the openorgs wf to create relations and populate openorgs db 2021-02-26 10:19:28 +01:00
Enrico Ottonello ca1800510a Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2021-02-25 18:45:02 +01:00
Enrico Ottonello 53d7023460 dateOfCollection taken from orcid last_update.txt on hdfs; cleaned wf parameters 2021-02-25 18:43:29 +01:00
Claudio Atzori 7df2461ccc indent XML records collected from oai-pmh endpoints 2021-02-25 16:19:12 +01:00
Enrico Ottonello d43ea88caf aligned orcid result typologies with openaire vocabulary 2021-02-25 15:02:10 +01:00
Claudio Atzori b830e33392 mdstore collector plugin 2021-02-25 12:30:30 +01:00
Claudio Atzori dc98c39500 more logging 2021-02-25 12:29:18 +01:00
Claudio Atzori 271e88537b code formatting 2021-02-25 12:28:56 +01:00
Claudio Atzori 9c899f4433 cleanup on transformation functions and the relative tests 2021-02-24 15:07:59 +01:00
Claudio Atzori fc3fa5e343 implemented mdstore collector plugin 2021-02-24 15:07:24 +01:00
Enrico Ottonello 975823b968 data from last updated orcid 2021-02-23 15:35:04 +01:00
Miriam Baglioni 896919e735 merge upstream 2021-02-23 10:45:29 +01:00
Antonis Lempesis d90767c733 correctly invalidating metadata 2021-02-19 03:18:47 +02:00
Antonis Lempesis 3681afbe04 typo 2021-02-19 03:04:27 +02:00
Antonis Lempesis c5502eba8f actually moved stats computation in impala instead of hive... 2021-02-19 02:54:39 +02:00
Antonis Lempesis 33c85d4e66 moved stats computation in impala instead of hive 2021-02-18 17:23:34 +02:00
Antonis Lempesis b8e96c8ae7 moved cache update to the end 2021-02-18 16:42:22 +02:00
Antonis Lempesis bcbfc052b1 fixed last errors in step 21 2021-02-18 16:32:54 +02:00
Antonis Lempesis 10a29a4b9a fixes in monitor step 2021-02-18 15:05:59 +02:00
Antonis Lempesis 8ef66452d5 fixed typo 2021-02-17 22:24:44 +02:00
Antonis Lempesis a8836e2f5f fixed typo 2021-02-17 19:27:07 +02:00
Claudio Atzori e7eba9f7e7 WIP: transformation workflow error reporting; cleanup 2021-02-17 16:54:08 +01:00
Claudio Atzori 58467aaf1e WIP: transformation workflow error reporting 2021-02-17 16:14:41 +01:00
Claudio Atzori cc88701f29 retry for any Socket exception 2021-02-17 16:13:54 +01:00
Antonis Lempesis a445c1ac3d fixed variable names in monitor script 2021-02-17 16:45:09 +02:00
Antonis Lempesis 00d516360f added missing ; 2021-02-17 16:41:10 +02:00
Claudio Atzori 545f8f3e48 using jackson objectmapper instead of GSon to serialise the aggregation report 2021-02-17 12:15:00 +01:00
Claudio Atzori b592d78bb4 WIP: collectorWorker error reporting, generalised reported implementation 2021-02-17 10:28:01 +01:00
Antonis Lempesis cd1b794409 added the monitor db wf 2021-02-17 02:11:55 +02:00
Claudio Atzori cf27905a71 WIP: collectorWorker error reporting, added report messages 2021-02-16 16:53:14 +01:00
Alessia Bardi bf2830b981 Merge pull request 'manage merging of Relatation validation attributes' (#95) from merge_rel_validation into master 2021-02-16 12:14:27 +01:00
Claudio Atzori 6f9864c564 manage merging of Relatation validation attributes 2021-02-16 11:53:44 +01:00