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1387 Commits

Author SHA1 Message Date
Claudio Atzori 6b56cae57d added mapping for bestaccessrights 2020-05-23 09:57:39 +02:00
Claudio Atzori 3cf2796ac6 code formatting 2020-05-22 12:34:00 +02:00
Michele Artini dc4621b3cb filter ORCID e MAG identifiers 2020-05-22 12:25:01 +02:00
Michele Artini 9f2d0f1b08 filter ORCID e MAG identifiers 2020-05-22 11:00:27 +02:00
Michele Artini 9de71e54a8 filter ORCID e MAG identifiers 2020-05-22 10:47:39 +02:00
Michele Artini c5f7e17348 author fullnames 2020-05-22 10:08:02 +02:00
Michele Artini e43d4d7778 added a coalesce in sql query 2020-05-21 11:08:07 +02:00
Michele Artini b3bcbb3129 resolve name of organization countries 2020-05-21 08:41:32 +02:00
Claudio Atzori 7838f2c63f init the empty list for author pids mapped from OAF 2020-05-15 17:06:01 +02:00
Claudio Atzori 7a89507ab1 code formatting 2020-05-15 15:16:54 +02:00
Claudio Atzori cfc8948717 fixed mapping OdfToGraph: pick the correct element to map author pids and author affiliations; extended mapping Oaf2Graph: added support for author pids 2020-05-15 12:26:16 +02:00
Claudio Atzori a832658296 code formatting 2020-05-15 10:21:09 +02:00
Claudio Atzori 18f46e47b9 added relations to the graph2hive import workflow 2020-05-15 09:34:48 +02:00
Claudio Atzori 9d028ffe1c cleanup 2020-05-15 09:28:55 +02:00
Claudio Atzori fd62359538 cleanup 2020-05-15 09:28:15 +02:00
Claudio Atzori eb64335a54 parallel implementation for graph Hive importer 2020-05-15 09:05:26 +02:00
Claudio Atzori f044d09315 revised mapping: more accurate mapping for name/surname from datacite format; improved mapping of null values 2020-05-14 15:07:24 +02:00
Claudio Atzori ab37953332 added global properties in wf definitions to avoid repeating name-node and job-tracker in the (many) distcp actions; reintroduced output directory removal at the beginning of each spark action 2020-05-14 10:25:41 +02:00
Claudio Atzori 5ecacad70a fixed default resource typing in Oaf/Odf mapping 2020-05-13 17:01:11 +02:00
Miriam Baglioni f5d785e096 used the DbClient moved in dhp-common 2020-05-11 13:59:42 +02:00
Miriam Baglioni 2abb84877d Merge branch 'master' into blacklist 2020-05-11 10:37:49 +02:00
Miriam Baglioni bb59bdd60f merge upstream 2020-05-11 10:33:17 +02:00
Miriam Baglioni 5e3548add6 - 2020-05-11 10:33:08 +02:00
Miriam Baglioni 871e079b45 merged with master 2020-05-11 10:20:00 +02:00
Claudio Atzori 60c40618d3 [maven-release-plugin] prepare for next development iteration 2020-05-11 10:17:14 +02:00
Claudio Atzori c267d958d5 [maven-release-plugin] prepare release dhp-1.2.0 2020-05-11 10:17:10 +02:00
Miriam Baglioni 391b2399cc merge upstream 2020-05-11 10:08:51 +02:00
Claudio Atzori 42f1a2bf94 bumped project version to 1.2.0-SNAPSHOT 2020-05-11 10:05:57 +02:00
Miriam Baglioni 32301451ec merge upstream 2020-05-11 09:42:23 +02:00
Claudio Atzori 0ccc864ad9 [maven-release-plugin] prepare for next development iteration 2020-05-08 17:01:31 +02:00
Claudio Atzori 6e47c724c6 [maven-release-plugin] prepare release dhp-1.1.7 2020-05-08 17:01:27 +02:00
Miriam Baglioni 4c94231cad merge with master fork 2020-05-08 12:25:57 +02:00
Claudio Atzori 62ea19f1d3 introduced mapping for ExternalReferences, made urls defined within an instance unique 2020-05-08 09:43:26 +02:00
Miriam Baglioni 207b899d6d merged with upstream 2020-05-07 11:43:53 +02:00
Miriam Baglioni 5efae3acb9 new workflow for job3 2020-05-07 11:38:10 +02:00
Claudio Atzori 17860d3ab6 general changes in the RAW graph mapping: missing collectedfrom/hostedby causes records to be skipped; factored out most of the constants in ModelConstants class (dhp-schemas) 2020-05-06 13:20:02 +02:00
Michele Artini 8f30a09d84 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-05 17:12:22 +02:00
Michele Artini ccc609f909 new module for the production of broker events 2020-05-05 17:09:00 +02:00
Claudio Atzori 4a8487165c using long param names in wf definition 2020-05-04 19:19:29 +02:00
Claudio Atzori a2fc37df5f adjusted parameters 2020-05-04 19:18:59 +02:00
Claudio Atzori f1b7e14036 code formatting 2020-05-04 19:18:34 +02:00
Miriam Baglioni 31ea05297d moved the DbClient to common and added needed dependency to pom 2020-05-04 12:22:28 +02:00
Miriam Baglioni 4b0bd91012 - 2020-04-30 12:45:28 +02:00
Miriam Baglioni 3abb76ff7a merge with upstream 2020-04-30 11:15:54 +02:00
Michele Artini eb9bd42970 fixed a problem with journals 2020-04-30 11:06:05 +02:00
Miriam Baglioni 638a3c465b - 2020-04-30 11:05:17 +02:00
Michele Artini a0a6109bbc fixed a problem with journals 2020-04-30 11:03:46 +02:00
Claudio Atzori 439c6255a2 cleanup 2020-04-29 19:09:07 +02:00
Claudio Atzori 77ac995770 cleaned up poms, added descriptions 2020-04-29 18:44:17 +02:00
Miriam Baglioni 3cffee74b9 merge with upstream 2020-04-29 18:25:29 +02:00
Michele Artini c43b4c8962 formatting 2020-04-29 12:56:58 +02:00
Michele Artini a5d7007005 Fix relations in migration 
Fix pom.xml in dhp-stats-update
 2020-04-29 12:05:41 +02:00
Miriam Baglioni f7695e833c resolved conflicts 2020-04-29 11:41:31 +02:00
Claudio Atzori 6f5b899038 reformatted code according to the updated style descriptor 2020-04-28 11:23:29 +02:00
Claudio Atzori ac25f2d8d1 integrated changes from master 2020-04-28 08:55:28 +02:00
Miriam Baglioni 2980e50edf merge upstream 2020-04-27 15:06:48 +02:00
Claudio Atzori a0bdbacdae switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:52:31 +02:00
Claudio Atzori 7a3f8085f7 switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:45:40 +02:00
Michele Artini 1260d03eba skip empty projects 2020-04-27 13:51:13 +02:00
Miriam Baglioni c093d764a3 - 2020-04-27 11:12:38 +02:00
Claudio Atzori 268462623a refined definition of equals and hash methods for Oaf model classes, now based on entity identifier, while relations consider sourceid, targetid and relationship semantic; Factored out function to group Oaf objects in grouping operations; Raw graph creation procedure merges entities and relationships providing the same identity 2020-04-24 14:42:01 +02:00
Claudio Atzori a3e480d1c9 implmented DispatchEntitiesApplication using spark2 datasets 2020-04-24 14:36:53 +02:00
Claudio Atzori 48157e0fc4 GraphHiveImporterJob moved in dedicate package 2020-04-24 14:32:28 +02:00
Michele Artini 072eae3803 fixed a problem with missing contexts 2020-04-23 16:42:49 +02:00
Michele Artini b164d96874 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-04-23 16:19:16 +02:00
Michele Artini d920ce501e fixed a problem with missing instances 2020-04-23 16:18:40 +02:00
Claudio Atzori 8851050814 replaced hive_db_name with hiveDbName 2020-04-23 08:36:40 +02:00
Claudio Atzori 91f81107b1 applying code formatting 2020-04-23 07:52:32 +02:00
Claudio Atzori ade4cb97af fixed parameters passed to the postprocessing action in the workflow mapping the graph as hive DB 2020-04-22 18:24:06 +02:00
Claudio Atzori e81960335c Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-04-22 10:46:37 +02:00
Michele Artini 9e4d58f505 ResultType 2020-04-22 10:07:26 +02:00
Claudio Atzori c891661822 small adjustments in the graph2hive workflow 2020-04-21 18:52:23 +02:00
Claudio Atzori cd320efa96 added extra spark options to graph to hive workflow 2020-04-21 16:12:20 +02:00
Claudio Atzori d772d967aa restored changes from master branch 2020-04-20 18:53:06 +02:00
miconis 4da13e4570 Revert "Merge branch 'master' into deduptesting" 
This reverts commit 772f75d167, reversing
changes made to 5f45f2c77f.
 2020-04-20 16:04:49 +02:00
Claudio Atzori d714bfb4d4 collectedfrom field moved in common parent class Oaf.java 2020-04-20 12:25:19 +02:00
Michele Artini 8ff7facfa3 fixed collectedFrom ID 2020-04-20 11:09:27 +02:00
Michele Artini 25307965d2 add a default datainfo if missing 2020-04-20 09:43:27 +02:00
Michele Artini d2058fdc47 tests 2020-04-20 09:31:14 +02:00
Michele Artini 478a958f09 tests 2020-04-20 09:15:27 +02:00
Claudio Atzori ad7a131b18 introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project 2020-04-18 12:42:58 +02:00
Claudio Atzori ff30f99c65 using newline delimited json files for the raw graph materialization. Introduced contentPath parameter 2020-04-15 16:16:20 +02:00
Alessia Bardi 550a9f82ed Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-04-14 17:53:01 +02:00
Alessia Bardi a68fae9bcb now supporting openaire 4.0 compliance 2020-04-14 17:52:48 +02:00
Sandro La Bruzzo c36239e693 fixed incremental indexing 2020-04-14 17:47:36 +02:00
Claudio Atzori 82e8341f50 reorganizing parameter names in the provision workflow 2020-04-14 15:54:41 +02:00
Claudio Atzori 6b5f9ca9cb raw graph creation workflow moved under dhp-graph-mapper, claims integration is included 2020-04-10 17:53:07 +02:00
Claudio Atzori 47f3d9b757 unit test for GraphHiveImporterJob 2020-04-08 13:24:43 +02:00
Claudio Atzori d74e128aa6 Utility classes moved in dhp-common and dhp-schemas 2020-04-07 11:56:22 +02:00
Claudio Atzori 377e1ba840 [maven-release-plugin] prepare for next development iteration 2020-03-30 20:06:00 +02:00
Claudio Atzori 76d9315129 [maven-release-plugin] prepare release dhp-1.1.6 2020-03-30 20:05:56 +02:00
Claudio Atzori ef429010ee removed log file and job-override.properties 2020-03-30 20:00:58 +02:00
Sandro La Bruzzo 62cc257e5c fixed step1 workflow 2020-03-27 17:07:34 +01:00
Claudio Atzori 1767dfaa3f method can be protected, it is meant to be used only in tests 2020-03-27 14:31:26 +01:00
Sandro La Bruzzo a4b6a51168 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-27 13:48:56 +01:00
Sandro La Bruzzo 15d9106b3f FIxed merge of dhp dedup 2020-03-27 13:48:44 +01:00
Claudio Atzori e196fff212 adjusted path for source resource in unit test 2020-03-27 13:45:10 +01:00
Sandro La Bruzzo 8c9a56a0c8 refactored package name 2020-03-27 13:19:33 +01:00
Sandro La Bruzzo a9935f80d4 refactor class name and workflow name for graph mapper, added javadoc 2020-03-27 13:16:24 +01:00
Claudio Atzori 673e744649 moved openaire specific implementations under dedicated package eu.dnetlib.dhp.oa 2020-03-27 10:42:17 +01:00
Claudio Atzori 098fabab3f reorganizing content under dhp-workflows/dhp-graph-mapper 2020-03-26 19:44:19 +01:00
Claudio Atzori 77c4294924 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-03-26 18:26:52 +01:00
Claudio Atzori 43cbcda7ef unit test for SparkGraphImporterJob 2020-03-26 18:26:40 +01:00
Sandro La Bruzzo 0cd022ad6a merge with master 2020-03-26 14:08:29 +01:00
Claudio Atzori abcd3f5bf5 added sample data for unit tests 2020-03-26 11:12:52 +01:00
Claudio Atzori 9dff4adbc3 dhp-graph-mapper workflow tests upgraded to junit5 2020-03-25 18:25:12 +01:00
Michele Artini ebe45003d9 fixed some junit packages 2020-03-25 16:45:03 +01:00
Claudio Atzori 2180cc4fe7 more fields included in result view definition 2020-03-25 11:21:46 +01:00
Claudio Atzori 8b0ba3d76a posprocessing script correctly run as hive2 action 2020-03-23 17:40:39 +01:00
Claudio Atzori 658d40ccbe WIP trying to use hive2 actions 2020-03-23 11:14:54 +01:00
Sandro La Bruzzo 0594b92a6d implemented relation with dataset 2020-03-19 11:11:07 +01:00
Claudio Atzori abe8fb69a2 added global properties, moved postprocessing script inside the oozie_app directory 2020-03-18 15:43:54 +01:00
Claudio Atzori 8fe7ae1482 xml formatting 2020-03-13 15:53:56 +01:00
Sandro La Bruzzo addaaa091f migrate relation from RDD to Dataset 2020-03-13 09:13:20 +01:00
Claudio Atzori 7b6f0c8756 reading graph dump as text files, encoded as newline-delimited JSON records, as indicated in the wiki 2020-03-10 17:19:17 +01:00
Claudio Atzori 0233987603 introduced post processing step following the hive DB creation/population 2020-03-04 10:56:50 +01:00
Claudio Atzori 9af3e904be close the SparkSession at the end 2020-03-04 10:53:31 +01:00
Claudio Atzori 25ceec29ab code formatting 2020-03-04 10:44:24 +01:00
Claudio Atzori 60bc2b1a20 drop the hive DB before populating it from scratch 2020-02-27 10:10:55 +01:00
Sandro La Bruzzo 2b8675462f refactoring code 2020-02-19 10:07:08 +01:00
Claudio Atzori 1b18fd4d54 sync with master branch 2020-02-17 13:49:46 +01:00
Sandro La Bruzzo 76ee85141a added oozie job for DNET migration and implemented Spark job for extracting entities 2020-02-17 12:31:44 +01:00
Michele Artini 176c5606bd aligned with origin/master, aligned model and mapping 2020-02-17 10:40:53 +01:00
Claudio Atzori 1ee1baa8c0 Merge branch 'master' into provision_indexing 2020-02-13 18:17:07 +01:00
Claudio Atzori a3d0b57b25 [maven-release-plugin] prepare for next development iteration 2020-02-13 18:11:33 +01:00
Claudio Atzori 6ed9a15bc8 [maven-release-plugin] prepare release dhp-1.1.5 2020-02-13 18:11:31 +01:00
Claudio Atzori 49e648f7c3 bumped version 2020-02-13 18:09:31 +01:00
Claudio Atzori 1fee6e2b7e implemented XML records construction and serialization, indexing WIP 2020-02-13 16:53:27 +01:00
Sandro La Bruzzo 19a80e4638 implemented workfow for aggregation and generation of infospace graph 2020-01-24 09:58:55 +01:00
Michele Artini b35c59eb42 partial implementation of entities from db 2020-01-20 16:04:19 +01:00
Sandro La Bruzzo abd9034da0 implemented DedupRecord factory with the merge of publications 2019-12-11 15:43:24 +01:00
miconis 4b66b471a4 implementation of the sorting by trust mechanism and the merge of oaf entities 2019-12-10 14:57:16 +01:00
Sandro La Bruzzo aad0cb40b7 Added schema Scholexplorer 2019-11-14 10:34:09 +01:00
Claudio Atzori 5711e75f67 use ${project.version} whenever possible 2019-11-08 17:41:51 +01:00
Claudio Atzori 245b4cbbb3 removed import limit 2019-11-08 17:41:01 +01:00
Claudio Atzori 7fe6835b47 [maven-release-plugin] prepare for next development iteration 2019-11-07 17:39:30 +01:00
Claudio Atzori 58918967d9 [maven-release-plugin] prepare release dhp-1.0.4 2019-11-07 17:39:27 +01:00
Claudio Atzori 5308f05a02 allow to speficy the target hive DB name in the infospace import workflow 2019-11-07 17:38:09 +01:00
Claudio Atzori a52d5bde4f simplified import procedure, maps the infospace as hive tables 2019-11-06 17:45:52 +01:00
Claudio Atzori 1e7a2ac41d align parmeter names, graph import procedure WIP 2019-11-04 17:41:01 +01:00
Claudio Atzori f39148dab8 [maven-release-plugin] prepare for next development iteration 2019-11-04 12:34:48 +01:00
Claudio Atzori 34b0e7b40a [maven-release-plugin] prepare release dhp-1.0.3 2019-11-04 12:34:46 +01:00
Claudio Atzori 439ad80d81 conversion utilities from protobuffer model to DHP model moved in dnet-mapreduce-jobs. Removed also the relative protobuf dependencies 2019-11-04 12:33:23 +01:00
Claudio Atzori 32ed4ae8d6 conversion utilities from protobuffer model to DHP model moved in dnet-mapreduce-jobs. Removed also the relative protobuf dependencies 2019-11-04 12:28:56 +01:00
Sandro La Bruzzo fd0ad82111 [maven-release-plugin] prepare for next development iteration 2019-10-31 12:08:51 +01:00
Sandro La Bruzzo f224613b40 [maven-release-plugin] prepare release dhp-1.0.2 2019-10-31 12:08:49 +01:00
Sandro La Bruzzo e13c30cc96 [maven-release-plugin] rollback the release of dhp-1.0.2 2019-10-31 12:07:04 +01:00
Sandro La Bruzzo 4da5239203 [maven-release-plugin] prepare release dhp-1.0.2 2019-10-31 12:06:14 +01:00
Sandro La Bruzzo db8b346edd [maven-release-plugin] rollback the release of 1.0.1 2019-10-31 11:49:05 +01:00
Sandro La Bruzzo fc80052173 [maven-release-plugin] prepare for next development iteration 2019-10-31 11:47:42 +01:00
Sandro La Bruzzo 3150c7ce6d [maven-release-plugin] prepare release 1.0.1 2019-10-31 11:47:40 +01:00
Sandro La Bruzzo 18ec8e8147 moved protoutils function to dhp-schemas 2019-10-31 11:31:37 +01:00
Sandro La Bruzzo 997e57d45b Added entity filter to spark class 2019-10-30 12:19:03 +01:00
Sandro La Bruzzo a336956708 added defautl property to job 2019-10-30 12:01:42 +01:00
Claudio Atzori 78b5b57e86 trying to make the spark action to be run as spark2 2019-10-29 18:56:34 +01:00
Claudio Atzori c8bb81cd9a align dependencies with IIS cluster 2019-10-29 18:10:20 +01:00
Sandro La Bruzzo fe62ccd6dd implemented oozie wf 2019-10-28 12:12:50 +01:00
Sandro La Bruzzo 9ee4e5a196 remove a bit of syntactic sugar on the object inheritance :( 2019-10-25 18:10:30 +02:00
Sandro La Bruzzo c74335ebc7 resolved conflict 2019-10-25 14:34:50 +02:00
Sandro La Bruzzo 8c902c500a minor fix 2019-10-25 14:33:54 +02:00
miconis 9fa5aebe9c minor changes 2019-10-25 12:52:28 +02:00
miconis 551eda1600 dataset, orp and software mapping implemented. addition of test resources for results. implementation of tests to check the result of the mapping 2019-10-25 12:48:25 +02:00
Sandro La Bruzzo eef14fade3 fixed conflict 2019-10-25 11:58:20 +02:00
Sandro La Bruzzo 0ea7e861ab added organizations test 2019-10-25 11:56:28 +02:00
miconis 4908165e05 implementation of the createPublication method to map publications 2019-10-25 11:54:14 +02:00
miconis df37bd6aaf placeholders for setters in createpublication 2019-10-25 10:57:19 +02:00
Sandro La Bruzzo c8d6d6bbd1 implemented organization mapping 2019-10-25 10:23:51 +02:00
miconis b525b54130 starting implementing the createPublication class 2019-10-25 09:55:31 +02:00
Claudio Atzori 4b331790e7 resolved conflicts 2019-10-25 09:45:12 +02:00
Claudio Atzori c929c1dfac more proto 2 graph model mappings 2019-10-25 09:25:36 +02:00
Sandro La Bruzzo 09ffda03a2 removed circular dependencies 2019-10-25 09:24:18 +02:00
Sandro La Bruzzo a10d071cf4 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:55:44 +02:00
Sandro La Bruzzo 3a8bb11695 mapped first part 2019-10-24 17:55:40 +02:00
Claudio Atzori d46371ceab Merge branch 'master' of https://code-repo.d2science.org/D-Net/dnet-hadoop 2019-10-24 17:43:55 +02:00
Claudio Atzori 0d88f9a6a4 added mapping for projects 2019-10-24 17:43:42 +02:00
Sandro La Bruzzo 2dd9572f41 added Mapping of OriginalDescription 2019-10-24 17:36:44 +02:00
miconis 351d850ad3 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:29:07 +02:00
miconis b66a7e3030 publication test added 2019-10-24 17:29:01 +02:00
Sandro La Bruzzo 6c32d418ac added conversion of ExtraInfo 2019-10-24 17:26:55 +02:00
Claudio Atzori 5f339a2c24 added mappings for basic types 2019-10-24 17:21:45 +02:00
Sandro La Bruzzo 9d04111391 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:05:52 +02:00
Sandro La Bruzzo 0902bac7dd fixed conflict 2019-10-24 17:05:42 +02:00
Claudio Atzori d8bfaa3687 added mapping for relations 2019-10-24 17:04:13 +02:00
Sandro La Bruzzo d2965636e0 created test for convert json into new OAF data model 2019-10-24 17:02:35 +02:00
Claudio Atzori 79c4f1bbd8 Protobuf to internal graph model, early steps 2019-10-24 16:56:13 +02:00
Claudio Atzori d38aeb8c6e DataInfo.provenanceaction not repeatable, fluent setters 2019-10-24 16:55:38 +02:00
Sandro La Bruzzo 5744a64478 added module dhp=graph-mapper 2019-10-24 16:00:28 +02:00