diff --git a/dhp-workflows/dhp-monitor-update/pom.xml b/dhp-workflows/dhp-monitor-update/pom.xml deleted file mode 100644 index ca0bb9837d..0000000000 --- a/dhp-workflows/dhp-monitor-update/pom.xml +++ /dev/null @@ -1,32 +0,0 @@ - - - - dhp-workflows - eu.dnetlib.dhp - 1.2.4-SNAPSHOT - - 4.0.0 - dhp-monitor-update - - - org.apache.spark - spark-core_2.11 - - - org.apache.spark - spark-sql_2.11 - - - - - - pl.project13.maven - git-commit-id-plugin - 2.1.11 - - false - - - - - diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/config-default.xml b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/config-default.xml deleted file mode 100644 index 63fc84d75e..0000000000 --- a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/config-default.xml +++ /dev/null @@ -1,34 +0,0 @@ - - - jobTracker - ${jobTracker} - - - nameNode - ${nameNode} - - - oozie.use.system.libpath - true - - - oozie.action.sharelib.for.spark - spark2 - - - hive_metastore_uris - thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083 - - - hive_jdbc_url - jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000/;UseNativeQuery=1;?spark.executor.memory=19166291558;spark.yarn.executor.memoryOverhead=3225;spark.driver.memory=11596411699;spark.yarn.driver.memoryOverhead=1228 - - - oozie.wf.workflow.notification.url - {serviceUrl}/v1/oozieNotification/jobUpdate?jobId=$jobId%26status=$status - - - stats_tool_api_url - ${stats_tool_api_url} - - \ No newline at end of file diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/copyDataToImpalaCluster.sh b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/copyDataToImpalaCluster.sh deleted file mode 100644 index c05d8342a3..0000000000 --- a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/copyDataToImpalaCluster.sh +++ /dev/null @@ -1,56 +0,0 @@ -export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs -export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami) -if ! [ -L $link_folder ] -then - rm -Rf "$link_folder" - ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder} -fi - -#export HADOOP_USER_NAME="dimitris.pierrakos" -export HADOOP_USER_NAME=$2 - -function copydb() { - db=$1 - - # copy the databases from ocean to impala - - echo "copying $db" - hadoop distcp -Dmapreduce.map.memory.mb=6144 -pb hdfs://nameservice1/user/hive/warehouse/${db}.db hdfs://impala-cluster-mn1.openaire.eu:8020/tmp - - # change ownership to impala - hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/${db}.db - - # create the databases - impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database if exists ${db} cascade"; - impala-shell -i impala-cluster-dn1.openaire.eu -q "create database ${db}"; - - impala-shell -q "INVALIDATE METADATA" - echo "creating schema for ${db}" - for i in `impala-shell -d ${db} --delimited -q "show tables"`; - do - impala-shell -d ${db} --delimited -q "show create table $i"; - done | sed 's/"$/;/' | sed 's/^"//' | sed 's/[[:space:]]\date[[:space:]]/`date`/g' | impala-shell -i impala-cluster-dn1.openaire.eu -c -f - - - # run the same command twice because we may have failures in the first run (due to views pointing to the same db) - for i in `impala-shell -d ${db} --delimited -q "show tables"`; - do - impala-shell -d ${db} --delimited -q "show create table $i"; - done | sed 's/"$/;/' | sed 's/^"//' | sed 's/[[:space:]]\date[[:space:]]/`date`/g' | impala-shell -i impala-cluster-dn1.openaire.eu -c -f - - - # load the data from /tmp in the respective tables - echo "copying data in tables and computing stats" - for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited -q "show tables"`; - do - impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "load data inpath '/tmp/${db}.db/$i' into table $i"; - impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "compute stats $i"; - done - - # deleting the remaining directory from hdfs - hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -rm -R /tmp/${db}.db -} - -MONITOR_DB=$1 -HADOOP_USER_NAME=$2 - -copydb $MONITOR_DB - diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/finalizeImpalaCluster.sh b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/finalizeImpalaCluster.sh deleted file mode 100644 index 46eaba6d05..0000000000 --- a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/finalizeImpalaCluster.sh +++ /dev/null @@ -1,22 +0,0 @@ -export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs -export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami) -if ! [ -L $link_folder ] -then - rm -Rf "$link_folder" - ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder} -fi - -function createShadowDB() { - SOURCE=$1 - SHADOW=$2 - - impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database ${SHADOW} CASCADE"; - impala-shell -i impala-cluster-dn1.openaire.eu -q "create database if not exists ${SHADOW}"; -# impala-shell -i impala-cluster-dn1.openaire.eu -d ${SHADOW} -q "show tables" | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -i impala-cluster-dn1.openaire.eu -f - - impala-shell -i impala-cluster-dn1.openaire.eu -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -i impala-cluster-dn1.openaire.eu -f - -} - -MONITOR_DB=$3 -MONITOR_DB_SHADOW=$4 - -createShadowDB $MONITOR_DB $MONITOR_DB_SHADOW diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/monitor-post.sh b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/monitor-post.sh deleted file mode 100644 index 5863625a1b..0000000000 --- a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/monitor-post.sh +++ /dev/null @@ -1,19 +0,0 @@ -export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs -export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami) -if ! [ -L $link_folder ] -then - rm -Rf "$link_folder" - ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder} -fi - -export SOURCE=$1 -export SHADOW=$2 -export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228" -export HADOOP_USER_NAME="oozie" - -echo "Updating shadow database" -hive -e "drop database if exists ${SHADOW} cascade" -hive -e "create database if not exists ${SHADOW}" -hive $HIVE_OPTS --database ${SOURCE} -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" > foo -hive -f foo -echo "Updated shadow database" \ No newline at end of file diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/monitor.sh b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/monitor.sh deleted file mode 100644 index 56681dc62b..0000000000 --- a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/monitor.sh +++ /dev/null @@ -1,22 +0,0 @@ -export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs -export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami) -if ! [ -L $link_folder ] -then - rm -Rf "$link_folder" - ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder} -fi - -export SOURCE=$1 -export TARGET=$2 -export SCRIPT_PATH=$3 - -export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228" -export HADOOP_USER_NAME="oozie" - -echo "Getting file from " $SCRIPT_PATH -hdfs dfs -copyToLocal $SCRIPT_PATH - -echo "Creating monitor database" -cat createMonitorDB.sql | sed "s/TARGET/${TARGET}/g" | sed "s/SOURCE/${SOURCE}/g" > foo -hive $HIVE_OPTS -f foo -echo "Hive shell finished" \ No newline at end of file diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/scripts/createMonitorDB.sql b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/scripts/createMonitorDB.sql deleted file mode 100644 index 257cb14190..0000000000 --- a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/scripts/createMonitorDB.sql +++ /dev/null @@ -1,266 +0,0 @@ -DROP TABLE IF EXISTS TARGET.result_new; - -create table TARGET.result_new stored as parquet as - select distinct * from ( - select * from SOURCE.result r where exists (select 1 from SOURCE.result_organization ro where ro.id=r.id and ro.organization in ( - 'openorgs____::38d7097854736583dde879d12dacafca' -- Brown University - ) )) foo; - -ANALYZE TABLE TARGET.result_new COMPUTE STATISTICS; - -INSERT INTO TARGET.result select * from TARGET.result_new; - -INSERT INTO TARGET.result_citations select * from TARGET.result_citations orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS; - -INSERT INTO TARGET.result_references_oc select * from TARGET.result_references_oc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS; - -INSERT INTO TARGET.result_citations_oc select * from TARGET.result_citations_oc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_citations_oc COMPUTE STATISTICS; - -INSERT INTO TARGET.result_classifications select * from TARGET.result_classifications orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS; - -INSERT INTO TARGET.result_apc select * from TARGET.result_apc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS; - -INSERT INTO TARGET.result_concepts select * from TARGET.result_concepts orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS; - -INSERT INTO TARGET.result_datasources select * from TARGET.result_datasources orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS; - -INSERT INTO TARGET.result_fundercount select * from TARGET.result_fundercount orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS; - -INSERT INTO TARGET.result_gold select * from TARGET.result_gold orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS; - -INSERT INTO TARGET.result_greenoa select * from TARGET.result_greenoa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS; - -INSERT INTO TARGET.result_languages select * from TARGET.result_languages orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS; - -INSERT INTO TARGET.result_licenses select * from TARGET.result_licenses orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS; - -INSERT INTO TARGET.result_oids select * from TARGET.result_oids orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS; - -INSERT INTO TARGET.result_organization select * from TARGET.result_organization orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS; - -INSERT INTO TARGET.result_peerreviewed select * from TARGET.result_peerreviewed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS; - -INSERT INTO TARGET.result_pids select * from TARGET.result_pids orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS; - -INSERT INTO TARGET.result_projectcount select * from TARGET.result_projectcount orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS; - -INSERT INTO TARGET.result_projects select * from TARGET.result_projects orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS; - -INSERT INTO TARGET.result_refereed select * from TARGET.result_refereed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS; - -INSERT INTO TARGET.result_sources select * from TARGET.result_sources orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS; - -INSERT INTO TARGET.result_topics select * from TARGET.result_topics orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS; - -INSERT INTO TARGET.result_fos select * from TARGET.result_fos orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS; - -INSERT INTO TARGET.result select * from TARGET.result_new; -COMPUTE STATS TARGET.result; - -INSERT INTO TARGET.result_citations select * from TARGET.result_citations orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_citations; - -INSERT INTO TARGET.result_references_oc select * from TARGET.result_references_oc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_references_oc; - -INSERT INTO TARGET.result_citations_oc select * from TARGET.result_citations_oc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_citations_oc; - -INSERT INTO TARGET.result_classifications select * from TARGET.result_classifications orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_classifications; - -INSERT INTO TARGET.result_apc select * from TARGET.result_apc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_apc; - -INSERT INTO TARGET.result_concepts select * from TARGET.result_concepts orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_concepts; - -INSERT INTO TARGET.result_datasources select * from TARGET.result_datasources orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_datasources; - -INSERT INTO TARGET.result_fundercount select * from TARGET.result_fundercount orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_fundercount; - -INSERT INTO TARGET.result_gold select * from TARGET.result_gold orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_gold; - -INSERT INTO TARGET.result_greenoa select * from TARGET.result_greenoa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_greenoa; - -INSERT INTO TARGET.result_languages select * from TARGET.result_languages orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_languages; - -INSERT INTO TARGET.result_licenses select * from TARGET.result_licenses orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_licenses; - -INSERT INTO TARGET.result_oids select * from TARGET.result_oids orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_oids; - -INSERT INTO TARGET.result_organization select * from TARGET.result_organization orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_organization; - -INSERT INTO TARGET.result_peerreviewed select * from TARGET.result_peerreviewed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_peerreviewed; - -INSERT INTO TARGET.result_pids select * from TARGET.result_pids orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_pids; - -INSERT INTO TARGET.result_projectcount select * from TARGET.result_projectcount orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_projectcount; - -INSERT INTO TARGET.result_projects select * from TARGET.result_projects orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_projects; - -INSERT INTO TARGET.result_refereed select * from TARGET.result_refereed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_refereed; - -INSERT INTO TARGET.result_sources select * from TARGET.result_sources orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_sources; - -INSERT INTO TARGET.result_topics select * from TARGET.result_topics orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.result_topics; - -INSERT INTO TARGET.result_fos select * from TARGET.result_fos orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); - -create view TARGET.foo1 as select * from TARGET.result_result rr where rr.source in (select id from TARGET.result_new); -create view TARGET.foo2 as select * from TARGET.result_result rr where rr.target in (select id from TARGET.result_new); -INSERT INTO TARGET.result_result select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou; -drop view TARGET.foo1; -drop view TARGET.foo2; - -ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS; - - --- indicators --- Sprint 1 ---- -INSERT INTO TARGET.indi_pub_green_oa select * from TARGET.indi_pub_green_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS; - -INSERT INTO TARGET.indi_pub_grey_lit select * from TARGET.indi_pub_grey_lit orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS; -INSERT INTO TARGET.indi_pub_doi_from_crossref select * from TARGET.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS; --- Sprint 2 ---- -INSERT INTO TARGET.indi_result_has_cc_licence select * from TARGET.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS; -INSERT INTO TARGET.indi_result_has_cc_licence_url select * from TARGET.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS; -INSERT INTO TARGET.indi_pub_has_abstract select * from TARGET.indi_pub_has_abstract orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS; -INSERT INTO TARGET.indi_result_with_orcid select * from TARGET.indi_result_with_orcid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS; ----- Sprint 3 ---- -INSERT INTO TARGET.indi_funded_result_with_fundref select * from TARGET.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS; ----- Sprint 4 ---- -INSERT INTO TARGET.indi_pub_diamond select * from TARGET.indi_pub_diamond orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS; -INSERT INTO TARGET.indi_pub_in_transformative select * from TARGET.indi_pub_in_transformative orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS; -INSERT INTO TARGET.indi_pub_closed_other_open select * from TARGET.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS; ----- Sprint 5 ---- -INSERT INTO TARGET.indi_result_no_of_copies select * from TARGET.indi_result_no_of_copies orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS; ----- Sprint 6 ---- -INSERT INTO TARGET.indi_pub_hybrid_oa_with_cc select * from TARGET.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS; -INSERT INTO TARGET.indi_pub_downloads select * from TARGET.indi_pub_downloads orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); -ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS; -INSERT INTO TARGET.indi_pub_downloads_datasource select * from TARGET.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); -ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS; -INSERT INTO TARGET.indi_pub_downloads_year select * from TARGET.indi_pub_downloads_year orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); -ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS; -INSERT INTO TARGET.indi_pub_downloads_datasource_year select * from TARGET.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); -ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS; ----- Sprint 7 ---- -INSERT INTO TARGET.indi_pub_gold_oa select * from TARGET.indi_pub_gold_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS; -INSERT INTO TARGET.indi_pub_hybrid select * from TARGET.indi_pub_hybrid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS; - -INSERT INTO TARGET.indi_pub_has_preprint select * from TARGET.indi_pub_has_preprint orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS; -INSERT INTO TARGET.indi_pub_in_subscribed select * from TARGET.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS; -INSERT INTO TARGET.indi_result_with_pid select * from TARGET.indi_result_with_pid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS; -======= -COMPUTE STATS TARGET.indi_pub_green_oa; -INSERT INTO TARGET.indi_pub_grey_lit select * from TARGET.indi_pub_grey_lit orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_grey_lit; -INSERT INTO TARGET.indi_pub_doi_from_crossref select * from TARGET.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_doi_from_crossref; --- Sprint 2 ---- -INSERT INTO TARGET.indi_result_has_cc_licence select * from TARGET.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_result_has_cc_licence; -INSERT INTO TARGET.indi_result_has_cc_licence_url select * from TARGET.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_result_has_cc_licence_url; -INSERT INTO TARGET.indi_pub_has_abstract select * from TARGET.indi_pub_has_abstract orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_has_abstract; -INSERT INTO TARGET.indi_result_with_orcid select * from TARGET.indi_result_with_orcid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_result_with_orcid; ----- Sprint 3 ---- -INSERT INTO TARGET.indi_funded_result_with_fundref select * from TARGET.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_funded_result_with_fundref; ----- Sprint 4 ---- -INSERT INTO TARGET.indi_pub_diamond select * from TARGET.indi_pub_diamond orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_diamond; -INSERT INTO TARGET.indi_pub_in_transformative select * from TARGET.indi_pub_in_transformative orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_in_transformative; -INSERT INTO TARGET.indi_pub_closed_other_open select * from TARGET.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_closed_other_open; ----- Sprint 5 ---- -INSERT INTO TARGET.indi_result_no_of_copies select * from TARGET.indi_result_no_of_copies orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_result_no_of_copies; ----- Sprint 6 ---- -INSERT INTO TARGET.indi_pub_hybrid_oa_with_cc select * from TARGET.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_hybrid_oa_with_cc; -INSERT INTO TARGET.indi_pub_downloads select * from TARGET.indi_pub_downloads orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); -COMPUTE STATS TARGET.indi_pub_downloads; -INSERT INTO TARGET.indi_pub_downloads_datasource select * from TARGET.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); -COMPUTE STATS TARGET.indi_pub_downloads_datasource; -INSERT INTO TARGET.indi_pub_downloads_year select * from TARGET.indi_pub_downloads_year orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); -COMPUTE STATS TARGET.indi_pub_downloads_year; -INSERT INTO TARGET.indi_pub_downloads_datasource_year select * from TARGET.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); -COMPUTE STATS TARGET.indi_pub_downloads_datasource_year; ----- Sprint 7 ---- -INSERT INTO TARGET.indi_pub_gold_oa select * from TARGET.indi_pub_gold_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_gold_oa; -INSERT INTO TARGET.indi_pub_hybrid select * from TARGET.indi_pub_hybrid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_hybrid; - -INSERT INTO TARGET.indi_pub_has_preprint select * from TARGET.indi_pub_has_preprint orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_has_preprint; -INSERT INTO TARGET.indi_pub_in_subscribed select * from TARGET.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_pub_in_subscribed; -INSERT INTO TARGET.indi_result_with_pid select * from TARGET.indi_result_with_pid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); -COMPUTE STATS TARGET.indi_result_with_pid; - ---create table TARGET.indi_datasets_gold_oa stored as parquet as select * from SOURCE.indi_datasets_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); ---compute stats TARGET.indi_datasets_gold_oa; ---create table TARGET.indi_software_gold_oa stored as parquet as select * from SOURCE.indi_software_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); ---compute stats TARGET.indi_software_gold_oa; -DROP TABLE TARGET.result_new; diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/updateCache.sh b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/updateCache.sh deleted file mode 100644 index 03aa535e10..0000000000 --- a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/updateCache.sh +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env bash - -curl --request GET $1/cache/updateCache -sleep 6h \ No newline at end of file diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/workflow.xml b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/workflow.xml deleted file mode 100644 index 651b6fa133..0000000000 --- a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/workflow.xml +++ /dev/null @@ -1,129 +0,0 @@ - - - - stats_db_name - the target stats database name - - - stats_db_shadow_name - the name of the shadow schema - - - monitor_db_name - the target monitor db name - - - monitor_db_shadow_name - the name of the shadow monitor db - - - stats_tool_api_url - The url of the API of the stats tool. Is used to trigger the cache update. - - - hive_metastore_uris - hive server metastore URIs - - - hive_jdbc_url - hive server jdbc url - - - hive_timeout - the time period, in seconds, after which Hive fails a transaction if a Hive client has not sent a hearbeat. The default value is 300 seconds. - - - context_api_url - the base url of the context api (https://services.openaire.eu/openaire) - - - - - ${jobTracker} - ${nameNode} - - - hive.metastore.uris - ${hive_metastore_uris} - - - hive.txn.timeout - ${hive_timeout} - - - - - - - - Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}] - - - - - ${jobTracker} - ${nameNode} - monitor.sh - ${stats_db_name} - ${monitor_db_name} - ${wf:appPath()}/scripts/createMonitorDB.sql - monitor.sh - - - - - - - - - ${jobTracker} - ${nameNode} - monitor-post.sh - ${stats_db_name} - ${monitor_db_name} - ${monitor_db_shadow_name} - monitor-post.sh - - - - - - - - ${jobTracker} - ${nameNode} - copyDataToImpalaCluster.sh - ${monitor_db_name} - ${hadoop_user_name} - copyDataToImpalaCluster.sh - - - - - - - - ${jobTracker} - ${nameNode} - finalizeImpalaCluster.sh - ${monitor_db_name} - ${monitor_db_shadow_name} - finalizeImpalaCluster.sh - - - - - - - - ${jobTracker} - ${nameNode} - updateCache.sh - ${stats_tool_api_url} - updateCache.sh - - - - - - \ No newline at end of file