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refactoring

This commit is contained in:
Miriam Baglioni 2020-04-23 12:35:49 +02:00
parent 8c5dac5cc3
commit d8dc31d4af
3 changed files with 197 additions and 161 deletions

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@ -1,38 +1,38 @@
package eu.dnetlib.dhp.orcidtoresultfromsemrel; package eu.dnetlib.dhp.orcidtoresultfromsemrel;
import static eu.dnetlib.dhp.PropagationConstant.*;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.gson.Gson; import com.google.gson.Gson;
import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.schema.oaf.Relation; import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.dhp.schema.oaf.Result; import eu.dnetlib.dhp.schema.oaf.Result;
import java.util.Arrays;
import java.util.List;
import org.apache.commons.io.IOUtils; import org.apache.commons.io.IOUtils;
import org.apache.hadoop.io.compress.GzipCodec; import org.apache.hadoop.io.compress.GzipCodec;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders; import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.apache.spark.sql.SparkSession; import org.apache.spark.sql.SparkSession;
import org.slf4j.Logger; import org.slf4j.Logger;
import org.slf4j.LoggerFactory; import org.slf4j.LoggerFactory;
import java.util.Arrays;
import java.util.List;
import static eu.dnetlib.dhp.PropagationConstant.*;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
public class PrepareResultOrcidAssociationStep1 { public class PrepareResultOrcidAssociationStep1 {
private static final Logger log = LoggerFactory.getLogger(PrepareResultOrcidAssociationStep1.class); private static final Logger log =
LoggerFactory.getLogger(PrepareResultOrcidAssociationStep1.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
public static void main(String[] args) throws Exception { public static void main(String[] args) throws Exception {
String jsonConfiguration = IOUtils.toString(SparkOrcidToResultFromSemRelJob3.class String jsonConfiguration =
.getResourceAsStream("/eu/dnetlib/dhp/orcidtoresultfromsemrel/input_prepareorcidtoresult_parameters.json")); IOUtils.toString(
SparkOrcidToResultFromSemRelJob3.class.getResourceAsStream(
"/eu/dnetlib/dhp/orcidtoresultfromsemrel/input_prepareorcidtoresult_parameters.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser( final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
jsonConfiguration);
parser.parseArgument(args); parser.parseArgument(args);
@ -51,33 +51,44 @@ public class PrepareResultOrcidAssociationStep1 {
final List<String> allowedsemrel = Arrays.asList(parser.get("allowedsemrels").split(";")); final List<String> allowedsemrel = Arrays.asList(parser.get("allowedsemrels").split(";"));
log.info("allowedSemRel: {}", new Gson().toJson(allowedsemrel)); log.info("allowedSemRel: {}", new Gson().toJson(allowedsemrel));
final String resultType = resultClassName.substring(resultClassName.lastIndexOf(".") + 1).toLowerCase(); final String resultType =
resultClassName.substring(resultClassName.lastIndexOf(".") + 1).toLowerCase();
log.info("resultType: {}", resultType); log.info("resultType: {}", resultType);
Class<? extends Result> resultClazz =
Class<? extends Result> resultClazz = (Class<? extends Result>) Class.forName(resultClassName); (Class<? extends Result>) Class.forName(resultClassName);
SparkConf conf = new SparkConf(); SparkConf conf = new SparkConf();
conf.set("hive.metastore.uris", parser.get("hive_metastore_uris")); conf.set("hive.metastore.uris", parser.get("hive_metastore_uris"));
runWithSparkHiveSession(conf, isSparkSessionManaged, runWithSparkHiveSession(
conf,
isSparkSessionManaged,
spark -> { spark -> {
if (isTest(parser)) { if (isTest(parser)) {
removeOutputDir(spark, outputPath); removeOutputDir(spark, outputPath);
} }
prepareInfo(spark, inputPath, outputPath, resultClazz, resultType, allowedsemrel); prepareInfo(
spark, inputPath, outputPath, resultClazz, resultType, allowedsemrel);
}); });
} }
private static <R extends Result> void prepareInfo(SparkSession spark, String inputPath, private static <R extends Result> void prepareInfo(
String outputPath, Class<R> resultClazz, SparkSession spark,
String resultType, String inputPath,
List<String> allowedsemrel) { String outputPath,
Class<R> resultClazz,
String resultType,
List<String> allowedsemrel) {
//read the relation table and the table related to the result it is using // read the relation table and the table related to the result it is using
final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext()); final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
org.apache.spark.sql.Dataset<Relation> relation = spark.createDataset(sc.textFile(inputPath + "/relation") org.apache.spark.sql.Dataset<Relation> relation =
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class)).rdd(), Encoders.bean(Relation.class)); spark.createDataset(
sc.textFile(inputPath + "/relation")
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class))
.rdd(),
Encoders.bean(Relation.class));
relation.createOrReplaceTempView("relation"); relation.createOrReplaceTempView("relation");
log.info("Reading Graph table from: {}", inputPath + "/" + resultType); log.info("Reading Graph table from: {}", inputPath + "/" + resultType);
@ -86,38 +97,38 @@ public class PrepareResultOrcidAssociationStep1 {
result.createOrReplaceTempView("result"); result.createOrReplaceTempView("result");
getPossibleResultOrcidAssociation(spark, allowedsemrel, outputPath + "/" + resultType); getPossibleResultOrcidAssociation(spark, allowedsemrel, outputPath + "/" + resultType);
} }
private static void getPossibleResultOrcidAssociation(SparkSession spark, List<String> allowedsemrel, String outputPath){ private static void getPossibleResultOrcidAssociation(
String query = " select target resultId, author authorList" + SparkSession spark, List<String> allowedsemrel, String outputPath) {
" from (select id, collect_set(named_struct('name', name, 'surname', surname, 'fullname', fullname, 'orcid', orcid)) author " + String query =
" from ( " + " select target resultId, author authorList"
" select id, MyT.fullname, MyT.name, MyT.surname, MyP.value orcid " + + " from (select id, collect_set(named_struct('name', name, 'surname', surname, 'fullname', fullname, 'orcid', orcid)) author "
" from result " + + " from ( "
" lateral view explode (author) a as MyT " + + " select id, MyT.fullname, MyT.name, MyT.surname, MyP.value orcid "
" lateral view explode (MyT.pid) p as MyP " + + " from result "
" where MyP.qualifier.classid = 'ORCID') tmp " + + " lateral view explode (author) a as MyT "
" group by id) r_t " + + " lateral view explode (MyT.pid) p as MyP "
" join (" + + " where MyP.qualifier.classid = 'ORCID') tmp "
" select source, target " + + " group by id) r_t "
" from relation " + + " join ("
" where datainfo.deletedbyinference = false " + + " select source, target "
getConstraintList(" relclass = '" ,allowedsemrel) + ") rel_rel " + + " from relation "
" on source = id"; + " where datainfo.deletedbyinference = false "
+ getConstraintList(" relclass = '", allowedsemrel)
+ ") rel_rel "
+ " on source = id";
spark.sql(query) spark.sql(query)
.as(Encoders.bean(ResultOrcidList.class)) .as(Encoders.bean(ResultOrcidList.class))
.toJavaRDD() .toJavaRDD()
.map(r -> OBJECT_MAPPER.writeValueAsString(r)) .map(r -> OBJECT_MAPPER.writeValueAsString(r))
.saveAsTextFile(outputPath, GzipCodec.class); .saveAsTextFile(outputPath, GzipCodec.class);
// .toJSON() // .toJSON()
// .write() // .write()
// .mode(SaveMode.Append) // .mode(SaveMode.Append)
// .option("compression","gzip") // .option("compression","gzip")
// .text(outputPath) // .text(outputPath)
// ; // ;
} }
} }

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@ -1,7 +1,12 @@
package eu.dnetlib.dhp.orcidtoresultfromsemrel; package eu.dnetlib.dhp.orcidtoresultfromsemrel;
import static eu.dnetlib.dhp.PropagationConstant.*;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import java.util.HashSet;
import java.util.Set;
import org.apache.commons.io.IOUtils; import org.apache.commons.io.IOUtils;
import org.apache.hadoop.io.compress.GzipCodec; import org.apache.hadoop.io.compress.GzipCodec;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
@ -9,22 +14,20 @@ import org.apache.spark.sql.*;
import org.slf4j.Logger; import org.slf4j.Logger;
import org.slf4j.LoggerFactory; import org.slf4j.LoggerFactory;
import scala.Tuple2; import scala.Tuple2;
import java.util.HashSet;
import java.util.Set;
import static eu.dnetlib.dhp.PropagationConstant.*;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
public class PrepareResultOrcidAssociationStep2 { public class PrepareResultOrcidAssociationStep2 {
private static final Logger log = LoggerFactory.getLogger(PrepareResultOrcidAssociationStep2.class); private static final Logger log =
LoggerFactory.getLogger(PrepareResultOrcidAssociationStep2.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
public static void main(String[] args) throws Exception { public static void main(String[] args) throws Exception {
String jsonConfiguration = IOUtils.toString(PrepareResultOrcidAssociationStep2.class String jsonConfiguration =
.getResourceAsStream("/eu/dnetlib/dhp/orcidtoresultfromsemrel/input_prepareorcidtoresult_parameters2.json")); IOUtils.toString(
PrepareResultOrcidAssociationStep2.class.getResourceAsStream(
"/eu/dnetlib/dhp/orcidtoresultfromsemrel/input_prepareorcidtoresult_parameters2.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser( final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
jsonConfiguration);
parser.parseArgument(args); parser.parseArgument(args);
@ -39,56 +42,60 @@ public class PrepareResultOrcidAssociationStep2 {
SparkConf conf = new SparkConf(); SparkConf conf = new SparkConf();
runWithSparkSession(conf, isSparkSessionManaged, runWithSparkSession(
conf,
isSparkSessionManaged,
spark -> { spark -> {
if (isTest(parser)) { if (isTest(parser)) {
removeOutputDir(spark, outputPath); removeOutputDir(spark, outputPath);
} }
mergeInfo(spark, inputPath, outputPath); mergeInfo(spark, inputPath, outputPath);
}); });
} }
private static void mergeInfo(SparkSession spark, String inputPath, String outputPath) { private static void mergeInfo(SparkSession spark, String inputPath, String outputPath) {
Dataset<ResultOrcidList> resultOrcidAssoc = readAssocResultOrcidList(spark, inputPath + "/publication") Dataset<ResultOrcidList> resultOrcidAssoc =
.union(readAssocResultOrcidList(spark, inputPath + "/dataset")) readAssocResultOrcidList(spark, inputPath + "/publication")
.union(readAssocResultOrcidList(spark, inputPath + "/otherresearchproduct")) .union(readAssocResultOrcidList(spark, inputPath + "/dataset"))
.union(readAssocResultOrcidList(spark, inputPath + "/software")); .union(readAssocResultOrcidList(spark, inputPath + "/otherresearchproduct"))
.union(readAssocResultOrcidList(spark, inputPath + "/software"));
resultOrcidAssoc resultOrcidAssoc
.toJavaRDD() .toJavaRDD()
.mapToPair(r -> new Tuple2<>(r.getResultId(), r)) .mapToPair(r -> new Tuple2<>(r.getResultId(), r))
.reduceByKey((a, b) -> { .reduceByKey(
if (a == null) { (a, b) -> {
return b; if (a == null) {
} return b;
if (b == null) { }
return a; if (b == null) {
} return a;
Set<String> orcid_set = new HashSet<>(); }
a.getAuthorList().stream().forEach(aa -> orcid_set.add(aa.getOrcid())); Set<String> orcid_set = new HashSet<>();
a.getAuthorList().stream().forEach(aa -> orcid_set.add(aa.getOrcid()));
b.getAuthorList().stream().forEach(aa -> { b.getAuthorList().stream()
if (!orcid_set.contains(aa.getOrcid())) { .forEach(
a.getAuthorList().add(aa); aa -> {
orcid_set.add(aa.getOrcid()); if (!orcid_set.contains(aa.getOrcid())) {
} a.getAuthorList().add(aa);
}); orcid_set.add(aa.getOrcid());
return a; }
}) });
return a;
})
.map(c -> c._2()) .map(c -> c._2())
.map(r -> OBJECT_MAPPER.writeValueAsString(r)) .map(r -> OBJECT_MAPPER.writeValueAsString(r))
.saveAsTextFile(outputPath, GzipCodec.class); .saveAsTextFile(outputPath, GzipCodec.class);
} }
private static Dataset<ResultOrcidList> readAssocResultOrcidList(SparkSession spark, String relationPath) { private static Dataset<ResultOrcidList> readAssocResultOrcidList(
return spark SparkSession spark, String relationPath) {
.read() return spark.read()
.textFile(relationPath) .textFile(relationPath)
.map(value -> OBJECT_MAPPER.readValue(value, ResultOrcidList.class), Encoders.bean(ResultOrcidList.class)); .map(
value -> OBJECT_MAPPER.readValue(value, ResultOrcidList.class),
Encoders.bean(ResultOrcidList.class));
} }
} }

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@ -1,10 +1,15 @@
package eu.dnetlib.dhp.orcidtoresultfromsemrel; package eu.dnetlib.dhp.orcidtoresultfromsemrel;
import static eu.dnetlib.dhp.PropagationConstant.*;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.schema.oaf.Author; import eu.dnetlib.dhp.schema.oaf.Author;
import eu.dnetlib.dhp.schema.oaf.Result; import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty; import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
import java.util.List;
import java.util.Optional;
import org.apache.commons.io.IOUtils; import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.StringUtils;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
@ -15,30 +20,25 @@ import org.apache.spark.sql.SparkSession;
import org.slf4j.Logger; import org.slf4j.Logger;
import org.slf4j.LoggerFactory; import org.slf4j.LoggerFactory;
import java.util.List;
import java.util.Optional;
import static eu.dnetlib.dhp.PropagationConstant.*;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
public class SparkOrcidToResultFromSemRelJob3 { public class SparkOrcidToResultFromSemRelJob3 {
private static final Logger log = LoggerFactory.getLogger(SparkOrcidToResultFromSemRelJob3.class); private static final Logger log =
LoggerFactory.getLogger(SparkOrcidToResultFromSemRelJob3.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
public static void main(String[] args) throws Exception { public static void main(String[] args) throws Exception {
String jsonConfiguration = IOUtils.toString(SparkOrcidToResultFromSemRelJob3.class String jsonConfiguration =
.getResourceAsStream("/eu/dnetlib/dhp/orcidtoresultfromsemrel/input_orcidtoresult_parameters.json")); IOUtils.toString(
SparkOrcidToResultFromSemRelJob3.class.getResourceAsStream(
"/eu/dnetlib/dhp/orcidtoresultfromsemrel/input_orcidtoresult_parameters.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser( final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
jsonConfiguration);
parser.parseArgument(args); parser.parseArgument(args);
Boolean isSparkSessionManaged = isSparkSessionManaged(parser); Boolean isSparkSessionManaged = isSparkSessionManaged(parser);
log.info("isSparkSessionManaged: {}", isSparkSessionManaged); log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
final String inputPath = parser.get("sourcePath"); final String inputPath = parser.get("sourcePath");
log.info("inputPath: {}", inputPath); log.info("inputPath: {}", inputPath);
@ -51,96 +51,116 @@ public class SparkOrcidToResultFromSemRelJob3 {
final String resultClassName = parser.get("resultTableName"); final String resultClassName = parser.get("resultTableName");
log.info("resultTableName: {}", resultClassName); log.info("resultTableName: {}", resultClassName);
final Boolean saveGraph = Optional final Boolean saveGraph =
.ofNullable(parser.get("saveGraph")) Optional.ofNullable(parser.get("saveGraph"))
.map(Boolean::valueOf) .map(Boolean::valueOf)
.orElse(Boolean.TRUE); .orElse(Boolean.TRUE);
log.info("saveGraph: {}", saveGraph); log.info("saveGraph: {}", saveGraph);
Class<? extends Result> resultClazz = (Class<? extends Result>) Class.forName(resultClassName); Class<? extends Result> resultClazz =
(Class<? extends Result>) Class.forName(resultClassName);
SparkConf conf = new SparkConf(); SparkConf conf = new SparkConf();
conf.set("hive.metastore.uris", parser.get("hive_metastore_uris")); conf.set("hive.metastore.uris", parser.get("hive_metastore_uris"));
runWithSparkHiveSession(conf, isSparkSessionManaged, runWithSparkHiveSession(
conf,
isSparkSessionManaged,
spark -> { spark -> {
if(isTest(parser)) { if (isTest(parser)) {
removeOutputDir(spark, outputPath); removeOutputDir(spark, outputPath);
} }
if(saveGraph) if (saveGraph)
execPropagation(spark, possibleUpdates, inputPath, outputPath, resultClazz); execPropagation(spark, possibleUpdates, inputPath, outputPath, resultClazz);
}); });
} }
private static <R extends Result> void execPropagation(SparkSession spark, String possibleUpdatesPath, String inputPath, private static <R extends Result> void execPropagation(
String outputPath, Class<R> resultClazz ) { SparkSession spark,
String possibleUpdatesPath,
String inputPath,
String outputPath,
Class<R> resultClazz) {
//read possible updates (resultId and list of possible orcid to add // read possible updates (resultId and list of possible orcid to add
Dataset<ResultOrcidList> possible_updates = readAssocResultOrcidList(spark, possibleUpdatesPath); Dataset<ResultOrcidList> possible_updates =
//read the result we have been considering readAssocResultOrcidList(spark, possibleUpdatesPath);
// read the result we have been considering
Dataset<R> result = readPathEntity(spark, inputPath, resultClazz); Dataset<R> result = readPathEntity(spark, inputPath, resultClazz);
//make join result left_outer with possible updates // make join result left_outer with possible updates
result.joinWith(possible_updates, result.col("id").equalTo(possible_updates.col("resultId")), result.joinWith(
"left_outer") possible_updates,
.map(value -> { result.col("id").equalTo(possible_updates.col("resultId")),
R ret = value._1(); "left_outer")
Optional<ResultOrcidList> rol = Optional.ofNullable(value._2()); .map(
if(rol.isPresent()) { value -> {
List<Author> toenrich_author = ret.getAuthor(); R ret = value._1();
List<AutoritativeAuthor> autoritativeAuthors = rol.get().getAuthorList(); Optional<ResultOrcidList> rol = Optional.ofNullable(value._2());
for(Author author: toenrich_author){ if (rol.isPresent()) {
if (!containsAllowedPid(author)){ List<Author> toenrich_author = ret.getAuthor();
enrichAuthor(author, autoritativeAuthors); List<AutoritativeAuthor> autoritativeAuthors =
rol.get().getAuthorList();
for (Author author : toenrich_author) {
if (!containsAllowedPid(author)) {
enrichAuthor(author, autoritativeAuthors);
}
} }
} }
}
return ret;
}, Encoders.bean(resultClazz))
.toJSON()
.write()
.mode(SaveMode.Overwrite)
.option("compression","gzip")
.text(outputPath);
return ret;
},
Encoders.bean(resultClazz))
.toJSON()
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.text(outputPath);
} }
private static Dataset<ResultOrcidList> readAssocResultOrcidList(SparkSession spark, String relationPath) { private static Dataset<ResultOrcidList> readAssocResultOrcidList(
return spark SparkSession spark, String relationPath) {
.read() return spark.read()
.textFile(relationPath) .textFile(relationPath)
.map(value -> OBJECT_MAPPER.readValue(value, ResultOrcidList.class), Encoders.bean(ResultOrcidList.class)); .map(
value -> OBJECT_MAPPER.readValue(value, ResultOrcidList.class),
Encoders.bean(ResultOrcidList.class));
} }
private static void enrichAuthor(Author a, List<AutoritativeAuthor> au){ private static void enrichAuthor(Author a, List<AutoritativeAuthor> au) {
for (AutoritativeAuthor aa: au){ for (AutoritativeAuthor aa : au) {
if(enrichAuthor(aa, a)){ if (enrichAuthor(aa, a)) {
return; return;
} }
} }
} }
private static boolean enrichAuthor(AutoritativeAuthor autoritative_author, Author author) { private static boolean enrichAuthor(AutoritativeAuthor autoritative_author, Author author) {
boolean toaddpid = false; boolean toaddpid = false;
if (StringUtils.isNoneEmpty(autoritative_author.getSurname())) { if (StringUtils.isNoneEmpty(autoritative_author.getSurname())) {
if (StringUtils.isNoneEmpty(author.getSurname())) { if (StringUtils.isNoneEmpty(author.getSurname())) {
if (autoritative_author.getSurname().trim().equalsIgnoreCase(author.getSurname().trim())) { if (autoritative_author
.getSurname()
.trim()
.equalsIgnoreCase(author.getSurname().trim())) {
//have the same surname. Check the name // have the same surname. Check the name
if (StringUtils.isNoneEmpty(autoritative_author.getName())) { if (StringUtils.isNoneEmpty(autoritative_author.getName())) {
if (StringUtils.isNoneEmpty(author.getName())) { if (StringUtils.isNoneEmpty(author.getName())) {
if (autoritative_author.getName().trim().equalsIgnoreCase(author.getName().trim())) { if (autoritative_author
.getName()
.trim()
.equalsIgnoreCase(author.getName().trim())) {
toaddpid = true; toaddpid = true;
} }
//they could be differently written (i.e. only the initials of the name in one of the two // they could be differently written (i.e. only the initials of the name
if (autoritative_author.getName().trim().substring(0, 0).equalsIgnoreCase(author.getName().trim().substring(0, 0))) { // in one of the two
if (autoritative_author
.getName()
.trim()
.substring(0, 0)
.equalsIgnoreCase(author.getName().trim().substring(0, 0))) {
toaddpid = true; toaddpid = true;
} }
} }
@ -148,21 +168,20 @@ public class SparkOrcidToResultFromSemRelJob3 {
} }
} }
} }
if (toaddpid){ if (toaddpid) {
StructuredProperty p = new StructuredProperty(); StructuredProperty p = new StructuredProperty();
p.setValue(autoritative_author.getOrcid()); p.setValue(autoritative_author.getOrcid());
p.setQualifier(getQualifier(PROPAGATION_AUTHOR_PID, PROPAGATION_AUTHOR_PID )); p.setQualifier(getQualifier(PROPAGATION_AUTHOR_PID, PROPAGATION_AUTHOR_PID));
p.setDataInfo(getDataInfo(PROPAGATION_DATA_INFO_TYPE, PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_ID, PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_NAME)); p.setDataInfo(
getDataInfo(
PROPAGATION_DATA_INFO_TYPE,
PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_ID,
PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_NAME));
author.addPid(p); author.addPid(p);
} }
return toaddpid; return toaddpid;
} }
private static boolean containsAllowedPid(Author a) { private static boolean containsAllowedPid(Author a) {
for (StructuredProperty pid : a.getPid()) { for (StructuredProperty pid : a.getPid()) {
if (PROPAGATION_AUTHOR_PID.equals(pid.getQualifier().getClassid())) { if (PROPAGATION_AUTHOR_PID.equals(pid.getQualifier().getClassid())) {
@ -171,5 +190,4 @@ public class SparkOrcidToResultFromSemRelJob3 {
} }
return false; return false;
} }
} }