diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectorWorker.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectorWorker.java index 5de4eb84b1..a770af8041 100644 --- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectorWorker.java +++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectorWorker.java @@ -7,6 +7,7 @@ import java.io.IOException; import java.util.Optional; import java.util.concurrent.atomic.AtomicInteger; +import eu.dnetlib.dhp.collection.plugin.file.FileCollectorPlugin; import eu.dnetlib.dhp.collection.plugin.file.FileGZipCollectorPlugin; import org.apache.hadoop.fs.FileSystem; import org.apache.hadoop.fs.Path; @@ -115,6 +116,8 @@ public class CollectorWorker extends ReportingJob { return new OaiCollectorPlugin(clientParams); case rest_json2xml: return new RestCollectorPlugin(clientParams); + case file: + return new FileCollectorPlugin(); case fileGZip: return new FileGZipCollectorPlugin(); case other: diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/CollectorPlugin.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/CollectorPlugin.java index 7d6aaaff86..08084e22a5 100644 --- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/CollectorPlugin.java +++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/CollectorPlugin.java @@ -10,7 +10,7 @@ import eu.dnetlib.dhp.common.collection.CollectorException; public interface CollectorPlugin { enum NAME { - oai, other, rest_json2xml, fileGZip; + oai, other, rest_json2xml, file, fileGZip; public enum OTHER_NAME { mdstore_mongodb_dump, mdstore_mongodb diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/file/FileCollectorPlugin.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/file/FileCollectorPlugin.java new file mode 100644 index 0000000000..3a268eabbe --- /dev/null +++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/file/FileCollectorPlugin.java @@ -0,0 +1,25 @@ +package eu.dnetlib.dhp.collection.plugin.file; + +import eu.dnetlib.dhp.common.collection.CollectorException; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.BufferedInputStream; +import java.io.FileInputStream; + +public class FileCollectorPlugin extends AbstractSplittedRecordPlugin { + + private static final Logger log = LoggerFactory.getLogger(FileCollectorPlugin.class); + + @Override + protected BufferedInputStream getBufferedInputStream(final String baseUrl) throws CollectorException { + + log.info("baseUrl: {}", baseUrl); + + try { + return new BufferedInputStream(new FileInputStream(baseUrl)); + } catch (Exception e) { + throw new CollectorException("Error reading file " + baseUrl, e); + } + } +} \ No newline at end of file diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/file/FileGZipCollectorPlugin.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/file/FileGZipCollectorPlugin.java index a4dd65d2af..b2c77e8b6c 100644 --- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/file/FileGZipCollectorPlugin.java +++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/file/FileGZipCollectorPlugin.java @@ -22,8 +22,7 @@ public class FileGZipCollectorPlugin extends AbstractSplittedRecordPlugin { GZIPInputStream stream = new GZIPInputStream(new FileInputStream(baseUrl)); return new BufferedInputStream(stream); } catch (Exception e) { - e.printStackTrace(); - throw new CollectorException(e); + throw new CollectorException("Error reading file " + baseUrl, e); } } } diff --git a/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/collection/plugin/file/FileCollectorPluginTest.java b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/collection/plugin/file/FileCollectorPluginTest.java new file mode 100644 index 0000000000..d9b5152fe1 --- /dev/null +++ b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/collection/plugin/file/FileCollectorPluginTest.java @@ -0,0 +1,53 @@ +package eu.dnetlib.dhp.collection.plugin.file; + +import eu.dnetlib.dhp.collection.ApiDescriptor; +import eu.dnetlib.dhp.common.aggregation.AggregatorReport; +import eu.dnetlib.dhp.common.collection.CollectorException; +import org.junit.jupiter.api.Assertions; +import org.junit.jupiter.api.BeforeEach; +import org.junit.jupiter.api.Test; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.HashMap; +import java.util.stream.Stream; + +public class FileCollectorPluginTest { + + private static final Logger log = LoggerFactory.getLogger(FileGZipCollectorPluginTest.class); + + private final ApiDescriptor api = new ApiDescriptor(); + private FileCollectorPlugin plugin; + + private static final String SPLIT_ON_ELEMENT = "repository"; + + @BeforeEach + public void setUp() { + + final String gzipFile = this + .getClass() + .getResource("/eu/dnetlib/dhp/collection/plugin/file/opendoar.xml") + .getFile(); + + api.setBaseUrl(gzipFile); + + HashMap params = new HashMap<>(); + params.put("splitOnElement", SPLIT_ON_ELEMENT); + + api.setParams(params); + + plugin = new FileCollectorPlugin(); + } + + @Test + void test() throws CollectorException { + + final Stream stream = plugin.collect(api, new AggregatorReport()); + + stream.limit(10).forEach(s -> { + Assertions.assertTrue(s.length() > 0); + log.info(s); + }); + } +} + diff --git a/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/collection/plugin/file/FileGZipCollectorPluginTest.java b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/collection/plugin/file/FileGZipCollectorPluginTest.java index 43f00928f2..18caf1c450 100644 --- a/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/collection/plugin/file/FileGZipCollectorPluginTest.java +++ b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/collection/plugin/file/FileGZipCollectorPluginTest.java @@ -26,7 +26,7 @@ public class FileGZipCollectorPluginTest { final String gzipFile = this .getClass() - .getResource("/eu/dnetlib/dhp/collection/plugin/file/gzip/opendoar.xml.gz") + .getResource("/eu/dnetlib/dhp/collection/plugin/file/opendoar.xml.gz") .getFile(); 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