forked from D-Net/dnet-hadoop
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
This commit is contained in:
commit
c8850456e9
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@ -1,4 +1,4 @@
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package eu.dnetllib.dhp.sx.bio
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package eu.dnetlib.dhp.sx.bio
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||||||
import eu.dnetlib.dhp.schema.common.ModelConstants
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import eu.dnetlib.dhp.schema.common.ModelConstants
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||||||
import eu.dnetlib.dhp.schema.oaf.utils.{GraphCleaningFunctions, OafMapperUtils}
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import eu.dnetlib.dhp.schema.oaf.utils.{GraphCleaningFunctions, OafMapperUtils}
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@ -1,8 +1,8 @@
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package eu.dnetllib.dhp.sx.bio
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package eu.dnetlib.dhp.sx.bio
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|
||||||
import eu.dnetlib.dhp.application.ArgumentApplicationParser
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import eu.dnetlib.dhp.application.ArgumentApplicationParser
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||||||
import eu.dnetlib.dhp.schema.oaf.Oaf
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import eu.dnetlib.dhp.schema.oaf.Oaf
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import eu.dnetllib.dhp.sx.bio.BioDBToOAF.ScholixResolved
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import BioDBToOAF.ScholixResolved
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import org.apache.commons.io.IOUtils
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import org.apache.commons.io.IOUtils
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import org.apache.spark.SparkConf
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import org.apache.spark.SparkConf
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import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession}
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import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession}
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@ -13,7 +13,7 @@ object SparkTransformBioDatabaseToOAF {
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def main(args: Array[String]): Unit = {
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def main(args: Array[String]): Unit = {
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val conf: SparkConf = new SparkConf()
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val conf: SparkConf = new SparkConf()
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val log: Logger = LoggerFactory.getLogger(getClass)
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val log: Logger = LoggerFactory.getLogger(getClass)
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val parser = new ArgumentApplicationParser(IOUtils.toString(getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/graph/bio/bio_to_oaf_params.json")))
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val parser = new ArgumentApplicationParser(IOUtils.toString(getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/bio/ebi/bio_to_oaf_params.json")))
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parser.parseArgument(args)
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parser.parseArgument(args)
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val database: String = parser.get("database")
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val database: String = parser.get("database")
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log.info("database: {}", database)
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log.info("database: {}", database)
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@ -1,10 +1,10 @@
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package eu.dnetllib.dhp.sx.bio.ebi
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package eu.dnetlib.dhp.sx.bio.ebi
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import eu.dnetlib.dhp.application.ArgumentApplicationParser
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import eu.dnetlib.dhp.application.ArgumentApplicationParser
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import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
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import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
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import eu.dnetlib.dhp.schema.oaf.Result
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import eu.dnetlib.dhp.schema.oaf.Result
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import eu.dnetlib.dhp.sx.bio.pubmed.{PMArticle, PMAuthor, PMJournal, PMParser, PubMedToOaf}
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import eu.dnetlib.dhp.utils.ISLookupClientFactory
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import eu.dnetlib.dhp.utils.ISLookupClientFactory
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import eu.dnetllib.dhp.sx.bio.pubmed.{PMArticle, PMAuthor, PMJournal, PMParser, PubMedToOaf}
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import org.apache.commons.io.IOUtils
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import org.apache.commons.io.IOUtils
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import org.apache.hadoop.conf.Configuration
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import org.apache.hadoop.conf.Configuration
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import org.apache.hadoop.fs.{FSDataOutputStream, FileSystem, Path}
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import org.apache.hadoop.fs.{FSDataOutputStream, FileSystem, Path}
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@ -1,8 +1,9 @@
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package eu.dnetllib.dhp.sx.bio.ebi
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package eu.dnetlib.dhp.sx.bio.ebi
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import eu.dnetlib.dhp.application.ArgumentApplicationParser
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import eu.dnetlib.dhp.application.ArgumentApplicationParser
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import eu.dnetllib.dhp.sx.bio.BioDBToOAF.EBILinkItem
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import eu.dnetlib.dhp.sx.bio.pubmed.{PMArticle, PMAuthor, PMJournal}
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||||||
import eu.dnetllib.dhp.sx.bio.pubmed.{PMArticle, PMAuthor, PMJournal}
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import eu.dnetlib.dhp.sx.bio.BioDBToOAF.EBILinkItem
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||||||
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import eu.dnetlib.dhp.sx.bio.pubmed.PMJournal
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import org.apache.commons.io.IOUtils
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import org.apache.commons.io.IOUtils
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||||||
import org.apache.http.client.config.RequestConfig
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import org.apache.http.client.config.RequestConfig
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import org.apache.http.client.methods.HttpGet
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import org.apache.http.client.methods.HttpGet
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@ -1,9 +1,10 @@
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||||||
package eu.dnetllib.dhp.sx.bio.ebi
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package eu.dnetlib.dhp.sx.bio.ebi
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||||||
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|
||||||
import eu.dnetlib.dhp.application.ArgumentApplicationParser
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import eu.dnetlib.dhp.application.ArgumentApplicationParser
|
||||||
import eu.dnetlib.dhp.schema.oaf.Oaf
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import eu.dnetlib.dhp.schema.oaf.Oaf
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||||||
import eu.dnetllib.dhp.sx.bio.BioDBToOAF
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import eu.dnetlib.dhp.sx.bio.BioDBToOAF
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||||||
import eu.dnetllib.dhp.sx.bio.BioDBToOAF.EBILinkItem
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import eu.dnetlib.dhp.sx.bio.BioDBToOAF.EBILinkItem
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||||||
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import BioDBToOAF.EBILinkItem
|
||||||
import org.apache.commons.io.IOUtils
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import org.apache.commons.io.IOUtils
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||||||
import org.apache.spark.SparkConf
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import org.apache.spark.SparkConf
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||||||
import org.apache.spark.sql._
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import org.apache.spark.sql._
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@ -1,5 +1,5 @@
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||||||
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|
||||||
package eu.dnetllib.dhp.sx.bio.pubmed;
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package eu.dnetlib.dhp.sx.bio.pubmed;
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||||||
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|
||||||
import java.io.Serializable;
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import java.io.Serializable;
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||||||
import java.util.ArrayList;
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import java.util.ArrayList;
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@ -1,5 +1,5 @@
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||||||
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|
||||||
package eu.dnetllib.dhp.sx.bio.pubmed;
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package eu.dnetlib.dhp.sx.bio.pubmed;
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||||||
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|
||||||
import java.io.Serializable;
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import java.io.Serializable;
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||||||
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@ -1,5 +1,5 @@
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||||||
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||||||
package eu.dnetllib.dhp.sx.bio.pubmed;
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package eu.dnetlib.dhp.sx.bio.pubmed;
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||||||
public class PMGrant {
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public class PMGrant {
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||||||
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@ -1,5 +1,5 @@
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||||||
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||||||
package eu.dnetllib.dhp.sx.bio.pubmed;
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package eu.dnetlib.dhp.sx.bio.pubmed;
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||||||
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|
||||||
import java.io.Serializable;
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import java.io.Serializable;
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||||||
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||||||
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@ -1,4 +1,4 @@
|
||||||
package eu.dnetllib.dhp.sx.bio.pubmed
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package eu.dnetlib.dhp.sx.bio.pubmed
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||||||
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|
||||||
import scala.xml.MetaData
|
import scala.xml.MetaData
|
||||||
import scala.xml.pull.{EvElemEnd, EvElemStart, EvText, XMLEventReader}
|
import scala.xml.pull.{EvElemEnd, EvElemStart, EvText, XMLEventReader}
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||||||
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|
@ -1,5 +1,5 @@
|
||||||
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|
||||||
package eu.dnetllib.dhp.sx.bio.pubmed;
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package eu.dnetlib.dhp.sx.bio.pubmed;
|
||||||
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|
||||||
public class PMSubject {
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public class PMSubject {
|
||||||
private String value;
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private String value;
|
||||||
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|
@ -1,4 +1,4 @@
|
||||||
package eu.dnetllib.dhp.sx.bio.pubmed
|
package eu.dnetlib.dhp.sx.bio.pubmed
|
||||||
|
|
||||||
import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
|
import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
|
||||||
import eu.dnetlib.dhp.schema.common.ModelConstants
|
import eu.dnetlib.dhp.schema.common.ModelConstants
|
||||||
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@ -0,0 +1,51 @@
|
||||||
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<workflow-app name="Transform_BioEntity_Workflow" xmlns="uri:oozie:workflow:0.5">
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||||||
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<parameters>
|
||||||
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<property>
|
||||||
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<name>sourcePath</name>
|
||||||
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<description>the PDB Database Working Path</description>
|
||||||
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</property>
|
||||||
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<property>
|
||||||
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<name>database</name>
|
||||||
|
<description>the PDB Database Working Path</description>
|
||||||
|
</property>
|
||||||
|
|
||||||
|
<property>
|
||||||
|
<name>targetPath</name>
|
||||||
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<description>the Target Working dir path</description>
|
||||||
|
</property>
|
||||||
|
</parameters>
|
||||||
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|
||||||
|
<start to="ConvertDB"/>
|
||||||
|
|
||||||
|
<kill name="Kill">
|
||||||
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
|
||||||
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</kill>
|
||||||
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|
||||||
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<action name="ConvertDB">
|
||||||
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<spark xmlns="uri:oozie:spark-action:0.2">
|
||||||
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<master>yarn</master>
|
||||||
|
<mode>cluster</mode>
|
||||||
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<name>Convert Bio DB to OAF Dataset</name>
|
||||||
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<class>eu.dnetlib.dhp.sx.bio.SparkTransformBioDatabaseToOAF</class>
|
||||||
|
<jar>dhp-aggregation-${projectVersion}.jar</jar>
|
||||||
|
<spark-opts>
|
||||||
|
--executor-memory=${sparkExecutorMemory}
|
||||||
|
--executor-cores=${sparkExecutorCores}
|
||||||
|
--driver-memory=${sparkDriverMemory}
|
||||||
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||||
|
--conf spark.sql.shuffle.partitions=2000
|
||||||
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||||
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||||
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||||
|
</spark-opts>
|
||||||
|
<arg>--master</arg><arg>yarn</arg>
|
||||||
|
<arg>--dbPath</arg><arg>${sourcePath}</arg>
|
||||||
|
<arg>--database</arg><arg>${database}</arg>
|
||||||
|
<arg>--targetPath</arg><arg>${targetPath}</arg>
|
||||||
|
</spark>
|
||||||
|
<ok to="End"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
<end name="End"/>
|
||||||
|
|
||||||
|
</workflow-app>
|
||||||
|
|
@ -1,10 +1,10 @@
|
||||||
package eu.dnetllib.dhp.sx.bio
|
package eu.dnetlib.dhp.sx.bio
|
||||||
|
|
||||||
import com.fasterxml.jackson.databind.{DeserializationFeature, ObjectMapper, SerializationFeature}
|
import com.fasterxml.jackson.databind.{DeserializationFeature, ObjectMapper, SerializationFeature}
|
||||||
import eu.dnetlib.dhp.aggregation.AbstractVocabularyTest
|
import eu.dnetlib.dhp.aggregation.AbstractVocabularyTest
|
||||||
import eu.dnetlib.dhp.schema.oaf.{Oaf, Relation, Result}
|
import eu.dnetlib.dhp.schema.oaf.{Oaf, Relation, Result}
|
||||||
import eu.dnetllib.dhp.sx.bio.BioDBToOAF.ScholixResolved
|
import eu.dnetlib.dhp.sx.bio.BioDBToOAF.ScholixResolved
|
||||||
import eu.dnetllib.dhp.sx.bio.pubmed.{PMArticle, PMParser, PubMedToOaf}
|
import eu.dnetlib.dhp.sx.bio.pubmed.{PMArticle, PMParser, PubMedToOaf}
|
||||||
import org.json4s.DefaultFormats
|
import org.json4s.DefaultFormats
|
||||||
import org.json4s.JsonAST.{JField, JObject, JString}
|
import org.json4s.JsonAST.{JField, JObject, JString}
|
||||||
import org.json4s.jackson.JsonMethods.parse
|
import org.json4s.jackson.JsonMethods.parse
|
||||||
|
|
@ -91,8 +91,8 @@ public class ReadBlacklistFromDB implements Closeable {
|
||||||
|
|
||||||
String encoding = rs.getString("relationship");
|
String encoding = rs.getString("relationship");
|
||||||
RelationInverse ri = ModelSupport.relationInverseMap.get(encoding);
|
RelationInverse ri = ModelSupport.relationInverseMap.get(encoding);
|
||||||
direct.setRelClass(ri.getRelation());
|
direct.setRelClass(ri.getRelClass());
|
||||||
inverse.setRelClass(ri.getInverse());
|
inverse.setRelClass(ri.getInverseRelClass());
|
||||||
direct.setRelType(ri.getRelType());
|
direct.setRelType(ri.getRelType());
|
||||||
inverse.setRelType(ri.getRelType());
|
inverse.setRelType(ri.getRelType());
|
||||||
direct.setSubRelType(ri.getSubReltype());
|
direct.setSubRelType(ri.getSubReltype());
|
||||||
|
|
|
||||||
|
|
@ -1,177 +0,0 @@
|
||||||
<workflow-app name="Transform_BioEntity_Workflow" xmlns="uri:oozie:workflow:0.5">
|
|
||||||
<parameters>
|
|
||||||
<property>
|
|
||||||
<name>PDBPath</name>
|
|
||||||
<description>the PDB Database Working Path</description>
|
|
||||||
</property>
|
|
||||||
|
|
||||||
<property>
|
|
||||||
<name>UNIPROTDBPath</name>
|
|
||||||
<description>the UNIPROT Database Working Path</description>
|
|
||||||
</property>
|
|
||||||
|
|
||||||
<property>
|
|
||||||
<name>EBIDataset</name>
|
|
||||||
<description>the EBI Links Dataset Path</description>
|
|
||||||
</property>
|
|
||||||
|
|
||||||
<property>
|
|
||||||
<name>ScholixResolvedDBPath</name>
|
|
||||||
<description>the Scholix Resolved Dataset Path</description>
|
|
||||||
</property>
|
|
||||||
|
|
||||||
<property>
|
|
||||||
<name>CrossrefLinksPath</name>
|
|
||||||
<description>the CrossrefLinks Path</description>
|
|
||||||
</property>
|
|
||||||
<property>
|
|
||||||
<name>targetPath</name>
|
|
||||||
<description>the Target Working dir path</description>
|
|
||||||
</property>
|
|
||||||
</parameters>
|
|
||||||
|
|
||||||
<start to="ConvertPDB"/>
|
|
||||||
|
|
||||||
<kill name="Kill">
|
|
||||||
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
|
|
||||||
</kill>
|
|
||||||
|
|
||||||
<action name="ConvertPDB">
|
|
||||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
||||||
<master>yarn</master>
|
|
||||||
<mode>cluster</mode>
|
|
||||||
<name>Convert PDB to OAF Dataset</name>
|
|
||||||
<class>eu.dnetlib.dhp.sx.graph.bio.SparkTransformBioDatabaseToOAF</class>
|
|
||||||
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
||||||
<spark-opts>
|
|
||||||
--executor-memory=${sparkExecutorMemory}
|
|
||||||
--executor-cores=${sparkExecutorCores}
|
|
||||||
--driver-memory=${sparkDriverMemory}
|
|
||||||
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
||||||
--conf spark.sql.shuffle.partitions=2000
|
|
||||||
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
||||||
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
||||||
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
||||||
</spark-opts>
|
|
||||||
<arg>--master</arg><arg>yarn</arg>
|
|
||||||
<arg>--dbPath</arg><arg>${PDBPath}</arg>
|
|
||||||
<arg>--database</arg><arg>PDB</arg>
|
|
||||||
<arg>--targetPath</arg><arg>${targetPath}/pdb_OAF</arg>
|
|
||||||
</spark>
|
|
||||||
<ok to="ConvertUNIPROT"/>
|
|
||||||
<error to="Kill"/>
|
|
||||||
</action>
|
|
||||||
|
|
||||||
|
|
||||||
<action name="ConvertUNIPROT">
|
|
||||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
||||||
<master>yarn</master>
|
|
||||||
<mode>cluster</mode>
|
|
||||||
<name>Convert UNIPROT to OAF Dataset</name>
|
|
||||||
<class>eu.dnetlib.dhp.sx.graph.bio.SparkTransformBioDatabaseToOAF</class>
|
|
||||||
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
||||||
<spark-opts>
|
|
||||||
--executor-memory=${sparkExecutorMemory}
|
|
||||||
--executor-cores=${sparkExecutorCores}
|
|
||||||
--driver-memory=${sparkDriverMemory}
|
|
||||||
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
||||||
--conf spark.sql.shuffle.partitions=2000
|
|
||||||
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
||||||
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
||||||
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
||||||
</spark-opts>
|
|
||||||
<arg>--master</arg><arg>yarn</arg>
|
|
||||||
<arg>--dbPath</arg><arg>${UNIPROTDBPath}</arg>
|
|
||||||
<arg>--database</arg><arg>UNIPROT</arg>
|
|
||||||
<arg>--targetPath</arg><arg>${targetPath}/uniprot_OAF</arg>
|
|
||||||
</spark>
|
|
||||||
<ok to="ConvertEBILinks"/>
|
|
||||||
<error to="Kill"/>
|
|
||||||
</action>
|
|
||||||
|
|
||||||
|
|
||||||
<action name="ConvertEBILinks">
|
|
||||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
||||||
<master>yarn</master>
|
|
||||||
<mode>cluster</mode>
|
|
||||||
<name>Convert EBI Links to OAF Dataset</name>
|
|
||||||
<class>eu.dnetlib.dhp.sx.graph.ebi.SparkEBILinksToOaf</class>
|
|
||||||
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
||||||
<spark-opts>
|
|
||||||
--executor-memory=${sparkExecutorMemory}
|
|
||||||
--executor-cores=${sparkExecutorCores}
|
|
||||||
--driver-memory=${sparkDriverMemory}
|
|
||||||
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
||||||
--conf spark.sql.shuffle.partitions=2000
|
|
||||||
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
||||||
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
||||||
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
||||||
</spark-opts>
|
|
||||||
<arg>--master</arg><arg>yarn</arg>
|
|
||||||
<arg>--sourcePath</arg><arg>${EBIDataset}</arg>
|
|
||||||
<arg>--targetPath</arg><arg>${targetPath}/ebi_OAF</arg>
|
|
||||||
</spark>
|
|
||||||
<ok to="ConvertScholixResolved"/>
|
|
||||||
<error to="Kill"/>
|
|
||||||
</action>
|
|
||||||
|
|
||||||
|
|
||||||
<action name="ConvertScholixResolved">
|
|
||||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
||||||
<master>yarn</master>
|
|
||||||
<mode>cluster</mode>
|
|
||||||
<name>Convert Scholix to OAF Dataset</name>
|
|
||||||
<class>eu.dnetlib.dhp.sx.graph.bio.SparkTransformBioDatabaseToOAF</class>
|
|
||||||
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
||||||
<spark-opts>
|
|
||||||
--executor-memory=${sparkExecutorMemory}
|
|
||||||
--executor-cores=${sparkExecutorCores}
|
|
||||||
--driver-memory=${sparkDriverMemory}
|
|
||||||
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
||||||
--conf spark.sql.shuffle.partitions=2000
|
|
||||||
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
||||||
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
||||||
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
||||||
</spark-opts>
|
|
||||||
<arg>--master</arg><arg>yarn</arg>
|
|
||||||
<arg>--dbPath</arg><arg>${ScholixResolvedDBPath}</arg>
|
|
||||||
<arg>--database</arg><arg>SCHOLIX</arg>
|
|
||||||
<arg>--targetPath</arg><arg>${targetPath}/scholix_resolved_OAF</arg>
|
|
||||||
</spark>
|
|
||||||
<ok to="ConvertCrossrefLinks"/>
|
|
||||||
<error to="Kill"/>
|
|
||||||
</action>
|
|
||||||
|
|
||||||
|
|
||||||
<action name="ConvertCrossrefLinks">
|
|
||||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
||||||
<master>yarn</master>
|
|
||||||
<mode>cluster</mode>
|
|
||||||
<name>Convert Crossref Links to OAF Dataset</name>
|
|
||||||
<class>eu.dnetlib.dhp.sx.graph.bio.SparkTransformBioDatabaseToOAF</class>
|
|
||||||
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
||||||
<spark-opts>
|
|
||||||
--executor-memory=${sparkExecutorMemory}
|
|
||||||
--executor-cores=${sparkExecutorCores}
|
|
||||||
--driver-memory=${sparkDriverMemory}
|
|
||||||
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
||||||
--conf spark.sql.shuffle.partitions=2000
|
|
||||||
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
||||||
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
||||||
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
||||||
</spark-opts>
|
|
||||||
<arg>--master</arg><arg>yarn</arg>
|
|
||||||
<arg>--dbPath</arg><arg>${CrossrefLinksPath}</arg>
|
|
||||||
<arg>--database</arg><arg>CROSSREF_LINKS</arg>
|
|
||||||
<arg>--targetPath</arg><arg>${targetPath}/crossref_unresolved_relation_OAF</arg>
|
|
||||||
</spark>
|
|
||||||
<ok to="End"/>
|
|
||||||
<error to="Kill"/>
|
|
||||||
</action>
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<end name="End"/>
|
|
||||||
|
|
||||||
</workflow-app>
|
|
||||||
|
|
@ -25,102 +25,102 @@ import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
|
||||||
@ExtendWith(MockitoExtension.class)
|
@ExtendWith(MockitoExtension.class)
|
||||||
public class SolrConfigExploreTest extends SolrExploreTest {
|
public class SolrConfigExploreTest extends SolrExploreTest {
|
||||||
|
|
||||||
protected static SparkSession spark;
|
protected static SparkSession spark;
|
||||||
|
|
||||||
private static final Integer batchSize = 100;
|
private static final Integer batchSize = 100;
|
||||||
|
|
||||||
@Mock
|
@Mock
|
||||||
private ISLookUpService isLookUpService;
|
private ISLookUpService isLookUpService;
|
||||||
|
|
||||||
@Mock
|
@Mock
|
||||||
private ISLookupClient isLookupClient;
|
private ISLookupClient isLookupClient;
|
||||||
|
|
||||||
@BeforeEach
|
@BeforeEach
|
||||||
public void prepareMocks() throws ISLookUpException, IOException {
|
public void prepareMocks() throws ISLookUpException, IOException {
|
||||||
isLookupClient.setIsLookup(isLookUpService);
|
isLookupClient.setIsLookup(isLookUpService);
|
||||||
|
|
||||||
int solrPort = URI.create("http://" + miniCluster.getZkClient().getZkServerAddress()).getPort();
|
int solrPort = URI.create("http://" + miniCluster.getZkClient().getZkServerAddress()).getPort();
|
||||||
|
|
||||||
Mockito
|
Mockito
|
||||||
.when(isLookupClient.getDsId(Mockito.anyString()))
|
.when(isLookupClient.getDsId(Mockito.anyString()))
|
||||||
.thenReturn("313f0381-23b6-466f-a0b8-c72a9679ac4b_SW5kZXhEU1Jlc291cmNlcy9JbmRleERTUmVzb3VyY2VUeXBl");
|
.thenReturn("313f0381-23b6-466f-a0b8-c72a9679ac4b_SW5kZXhEU1Jlc291cmNlcy9JbmRleERTUmVzb3VyY2VUeXBl");
|
||||||
Mockito.when(isLookupClient.getZkHost()).thenReturn(String.format("127.0.0.1:%s/solr", solrPort));
|
Mockito.when(isLookupClient.getZkHost()).thenReturn(String.format("127.0.0.1:%s/solr", solrPort));
|
||||||
Mockito
|
Mockito
|
||||||
.when(isLookupClient.getLayoutSource(Mockito.anyString()))
|
.when(isLookupClient.getLayoutSource(Mockito.anyString()))
|
||||||
.thenReturn(IOUtils.toString(getClass().getResourceAsStream("fields.xml")));
|
.thenReturn(IOUtils.toString(getClass().getResourceAsStream("fields.xml")));
|
||||||
Mockito
|
Mockito
|
||||||
.when(isLookupClient.getLayoutTransformer())
|
.when(isLookupClient.getLayoutTransformer())
|
||||||
.thenReturn(IOUtils.toString(getClass().getResourceAsStream("layoutToRecordTransformer.xsl")));
|
.thenReturn(IOUtils.toString(getClass().getResourceAsStream("layoutToRecordTransformer.xsl")));
|
||||||
}
|
}
|
||||||
|
|
||||||
@BeforeAll
|
@BeforeAll
|
||||||
public static void before() {
|
public static void before() {
|
||||||
|
|
||||||
SparkConf conf = new SparkConf();
|
SparkConf conf = new SparkConf();
|
||||||
conf.setAppName(XmlIndexingJobTest.class.getSimpleName());
|
conf.setAppName(XmlIndexingJobTest.class.getSimpleName());
|
||||||
conf.registerKryoClasses(new Class[] {
|
conf.registerKryoClasses(new Class[] {
|
||||||
SerializableSolrInputDocument.class
|
SerializableSolrInputDocument.class
|
||||||
});
|
});
|
||||||
|
|
||||||
conf.setMaster("local[1]");
|
conf.setMaster("local[1]");
|
||||||
conf.set("spark.driver.host", "localhost");
|
conf.set("spark.driver.host", "localhost");
|
||||||
conf.set("hive.metastore.local", "true");
|
conf.set("hive.metastore.local", "true");
|
||||||
conf.set("spark.ui.enabled", "false");
|
conf.set("spark.ui.enabled", "false");
|
||||||
conf.set("spark.sql.warehouse.dir", workingDir.resolve("spark").toString());
|
conf.set("spark.sql.warehouse.dir", workingDir.resolve("spark").toString());
|
||||||
|
|
||||||
spark = SparkSession
|
spark = SparkSession
|
||||||
.builder()
|
.builder()
|
||||||
.appName(XmlIndexingJobTest.class.getSimpleName())
|
.appName(XmlIndexingJobTest.class.getSimpleName())
|
||||||
.config(conf)
|
.config(conf)
|
||||||
.getOrCreate();
|
.getOrCreate();
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
}
|
@AfterAll
|
||||||
|
public static void tearDown() {
|
||||||
|
spark.stop();
|
||||||
|
}
|
||||||
|
|
||||||
@AfterAll
|
@Test
|
||||||
public static void tearDown() {
|
public void testSolrConfig() throws Exception {
|
||||||
spark.stop();
|
|
||||||
}
|
|
||||||
|
|
||||||
@Test
|
String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml";
|
||||||
public void testSolrConfig() throws Exception {
|
|
||||||
|
|
||||||
String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml";
|
new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.SOLR, null)
|
||||||
|
.run(isLookupClient);
|
||||||
|
Assertions.assertEquals(0, miniCluster.getSolrClient().commit().getStatus());
|
||||||
|
|
||||||
new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.SOLR, null).run(isLookupClient);
|
String[] queryStrings = {
|
||||||
Assertions.assertEquals(0, miniCluster.getSolrClient().commit().getStatus());
|
"cancer",
|
||||||
|
"graph",
|
||||||
|
"graphs"
|
||||||
|
};
|
||||||
|
|
||||||
String[] queryStrings = {
|
for (String q : queryStrings) {
|
||||||
"cancer",
|
SolrQuery query = new SolrQuery();
|
||||||
"graph",
|
query.setRequestHandler("/exploreSearch");
|
||||||
"graphs"
|
query.add(CommonParams.Q, q);
|
||||||
};
|
query.set("debugQuery", "on");
|
||||||
|
|
||||||
for (String q : queryStrings) {
|
log.info("Submit query to Solr with params: {}", query.toString());
|
||||||
SolrQuery query = new SolrQuery();
|
QueryResponse rsp = miniCluster.getSolrClient().query(query);
|
||||||
query.setRequestHandler("/exploreSearch");
|
|
||||||
query.add(CommonParams.Q, q);
|
|
||||||
query.set("debugQuery", "on");
|
|
||||||
|
|
||||||
log.info("Submit query to Solr with params: {}", query.toString());
|
|
||||||
QueryResponse rsp = miniCluster.getSolrClient().query(query);
|
|
||||||
// System.out.println(rsp.getHighlighting());
|
// System.out.println(rsp.getHighlighting());
|
||||||
// System.out.println(rsp.getExplainMap());
|
// System.out.println(rsp.getExplainMap());
|
||||||
|
|
||||||
for (SolrDocument doc : rsp.getResults()) {
|
for (SolrDocument doc : rsp.getResults()) {
|
||||||
System.out.println(
|
System.out
|
||||||
doc.get("score") + "\t" +
|
.println(
|
||||||
doc.get("__indexrecordidentifier") + "\t" +
|
doc.get("score") + "\t" +
|
||||||
doc.get("resultidentifier") + "\t" +
|
doc.get("__indexrecordidentifier") + "\t" +
|
||||||
doc.get("resultauthor") + "\t" +
|
doc.get("resultidentifier") + "\t" +
|
||||||
doc.get("resultacceptanceyear") + "\t" +
|
doc.get("resultauthor") + "\t" +
|
||||||
doc.get("resultsubject") + "\t" +
|
doc.get("resultacceptanceyear") + "\t" +
|
||||||
doc.get("resulttitle") + "\t" +
|
doc.get("resultsubject") + "\t" +
|
||||||
doc.get("relprojectname") + "\t" +
|
doc.get("resulttitle") + "\t" +
|
||||||
doc.get("resultdescription") + "\t" +
|
doc.get("relprojectname") + "\t" +
|
||||||
doc.get("__all") + "\t"
|
doc.get("resultdescription") + "\t" +
|
||||||
);
|
doc.get("__all") + "\t");
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
|
||||||
|
|
@ -34,98 +34,98 @@ import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
|
||||||
@ExtendWith(MockitoExtension.class)
|
@ExtendWith(MockitoExtension.class)
|
||||||
public class SolrConfigTest extends SolrTest {
|
public class SolrConfigTest extends SolrTest {
|
||||||
|
|
||||||
protected static SparkSession spark;
|
protected static SparkSession spark;
|
||||||
|
|
||||||
private static final Integer batchSize = 100;
|
private static final Integer batchSize = 100;
|
||||||
|
|
||||||
@Mock
|
@Mock
|
||||||
private ISLookUpService isLookUpService;
|
private ISLookUpService isLookUpService;
|
||||||
|
|
||||||
@Mock
|
@Mock
|
||||||
private ISLookupClient isLookupClient;
|
private ISLookupClient isLookupClient;
|
||||||
|
|
||||||
@BeforeEach
|
@BeforeEach
|
||||||
public void prepareMocks() throws ISLookUpException, IOException {
|
public void prepareMocks() throws ISLookUpException, IOException {
|
||||||
isLookupClient.setIsLookup(isLookUpService);
|
isLookupClient.setIsLookup(isLookUpService);
|
||||||
|
|
||||||
int solrPort = URI.create("http://" + miniCluster.getZkClient().getZkServerAddress()).getPort();
|
int solrPort = URI.create("http://" + miniCluster.getZkClient().getZkServerAddress()).getPort();
|
||||||
|
|
||||||
Mockito
|
Mockito
|
||||||
.when(isLookupClient.getDsId(Mockito.anyString()))
|
.when(isLookupClient.getDsId(Mockito.anyString()))
|
||||||
.thenReturn("313f0381-23b6-466f-a0b8-c72a9679ac4b_SW5kZXhEU1Jlc291cmNlcy9JbmRleERTUmVzb3VyY2VUeXBl");
|
.thenReturn("313f0381-23b6-466f-a0b8-c72a9679ac4b_SW5kZXhEU1Jlc291cmNlcy9JbmRleERTUmVzb3VyY2VUeXBl");
|
||||||
Mockito.when(isLookupClient.getZkHost()).thenReturn(String.format("127.0.0.1:%s/solr", solrPort));
|
Mockito.when(isLookupClient.getZkHost()).thenReturn(String.format("127.0.0.1:%s/solr", solrPort));
|
||||||
Mockito
|
Mockito
|
||||||
.when(isLookupClient.getLayoutSource(Mockito.anyString()))
|
.when(isLookupClient.getLayoutSource(Mockito.anyString()))
|
||||||
.thenReturn(IOUtils.toString(getClass().getResourceAsStream("fields.xml")));
|
.thenReturn(IOUtils.toString(getClass().getResourceAsStream("fields.xml")));
|
||||||
Mockito
|
Mockito
|
||||||
.when(isLookupClient.getLayoutTransformer())
|
.when(isLookupClient.getLayoutTransformer())
|
||||||
.thenReturn(IOUtils.toString(getClass().getResourceAsStream("layoutToRecordTransformer.xsl")));
|
.thenReturn(IOUtils.toString(getClass().getResourceAsStream("layoutToRecordTransformer.xsl")));
|
||||||
}
|
}
|
||||||
|
|
||||||
@BeforeAll
|
@BeforeAll
|
||||||
public static void before() {
|
public static void before() {
|
||||||
|
|
||||||
SparkConf conf = new SparkConf();
|
SparkConf conf = new SparkConf();
|
||||||
conf.setAppName(XmlIndexingJobTest.class.getSimpleName());
|
conf.setAppName(XmlIndexingJobTest.class.getSimpleName());
|
||||||
conf.registerKryoClasses(new Class[] {
|
conf.registerKryoClasses(new Class[] {
|
||||||
SerializableSolrInputDocument.class
|
SerializableSolrInputDocument.class
|
||||||
});
|
});
|
||||||
|
|
||||||
conf.setMaster("local[1]");
|
conf.setMaster("local[1]");
|
||||||
conf.set("spark.driver.host", "localhost");
|
conf.set("spark.driver.host", "localhost");
|
||||||
conf.set("hive.metastore.local", "true");
|
conf.set("hive.metastore.local", "true");
|
||||||
conf.set("spark.ui.enabled", "false");
|
conf.set("spark.ui.enabled", "false");
|
||||||
conf.set("spark.sql.warehouse.dir", workingDir.resolve("spark").toString());
|
conf.set("spark.sql.warehouse.dir", workingDir.resolve("spark").toString());
|
||||||
|
|
||||||
spark = SparkSession
|
spark = SparkSession
|
||||||
.builder()
|
.builder()
|
||||||
.appName(XmlIndexingJobTest.class.getSimpleName())
|
.appName(XmlIndexingJobTest.class.getSimpleName())
|
||||||
.config(conf)
|
.config(conf)
|
||||||
.getOrCreate();
|
.getOrCreate();
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
}
|
@AfterAll
|
||||||
|
public static void tearDown() {
|
||||||
|
spark.stop();
|
||||||
|
}
|
||||||
|
|
||||||
@AfterAll
|
@Test
|
||||||
public static void tearDown() {
|
public void testSolrConfig() throws Exception {
|
||||||
spark.stop();
|
|
||||||
}
|
|
||||||
|
|
||||||
@Test
|
String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml";
|
||||||
public void testSolrConfig() throws Exception {
|
|
||||||
|
|
||||||
String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml";
|
new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.SOLR, null)
|
||||||
|
.run(isLookupClient);
|
||||||
|
Assertions.assertEquals(0, miniCluster.getSolrClient().commit().getStatus());
|
||||||
|
|
||||||
new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.SOLR, null).run(isLookupClient);
|
String[] queryStrings = {
|
||||||
Assertions.assertEquals(0, miniCluster.getSolrClient().commit().getStatus());
|
"cancer",
|
||||||
|
"graph",
|
||||||
|
"graphs"
|
||||||
|
};
|
||||||
|
|
||||||
String[] queryStrings = {
|
for (String q : queryStrings) {
|
||||||
"cancer",
|
SolrQuery query = new SolrQuery();
|
||||||
"graph",
|
query.add(CommonParams.Q, q);
|
||||||
"graphs"
|
|
||||||
};
|
|
||||||
|
|
||||||
for (String q : queryStrings) {
|
log.info("Submit query to Solr with params: {}", query.toString());
|
||||||
SolrQuery query = new SolrQuery();
|
QueryResponse rsp = miniCluster.getSolrClient().query(query);
|
||||||
query.add(CommonParams.Q, q);
|
|
||||||
|
|
||||||
log.info("Submit query to Solr with params: {}", query.toString());
|
for (SolrDocument doc : rsp.getResults()) {
|
||||||
QueryResponse rsp = miniCluster.getSolrClient().query(query);
|
System.out
|
||||||
|
.println(
|
||||||
for (SolrDocument doc : rsp.getResults()) {
|
doc.get("score") + "\t" +
|
||||||
System.out.println(
|
doc.get("__indexrecordidentifier") + "\t" +
|
||||||
doc.get("score") + "\t" +
|
doc.get("resultidentifier") + "\t" +
|
||||||
doc.get("__indexrecordidentifier") + "\t" +
|
doc.get("resultauthor") + "\t" +
|
||||||
doc.get("resultidentifier") + "\t" +
|
doc.get("resultacceptanceyear") + "\t" +
|
||||||
doc.get("resultauthor") + "\t" +
|
doc.get("resultsubject") + "\t" +
|
||||||
doc.get("resultacceptanceyear") + "\t" +
|
doc.get("resulttitle") + "\t" +
|
||||||
doc.get("resultsubject") + "\t" +
|
doc.get("relprojectname") + "\t" +
|
||||||
doc.get("resulttitle") + "\t" +
|
doc.get("resultdescription") + "\t" +
|
||||||
doc.get("relprojectname") + "\t" +
|
doc.get("__all") + "\t");
|
||||||
doc.get("resultdescription") + "\t" +
|
}
|
||||||
doc.get("__all") + "\t"
|
}
|
||||||
);
|
}
|
||||||
}
|
|
||||||
}
|
|
||||||
}
|
|
||||||
}
|
}
|
||||||
|
|
|
||||||
|
|
@ -23,87 +23,87 @@ import org.slf4j.LoggerFactory;
|
||||||
|
|
||||||
public abstract class SolrExploreTest {
|
public abstract class SolrExploreTest {
|
||||||
|
|
||||||
protected static final Logger log = LoggerFactory.getLogger(SolrTest.class);
|
protected static final Logger log = LoggerFactory.getLogger(SolrTest.class);
|
||||||
|
|
||||||
protected static final String FORMAT = "test";
|
protected static final String FORMAT = "test";
|
||||||
protected static final String DEFAULT_COLLECTION = FORMAT + "-index-openaire";
|
protected static final String DEFAULT_COLLECTION = FORMAT + "-index-openaire";
|
||||||
protected static final String CONFIG_NAME = "testConfig";
|
protected static final String CONFIG_NAME = "testConfig";
|
||||||
|
|
||||||
protected static MiniSolrCloudCluster miniCluster;
|
protected static MiniSolrCloudCluster miniCluster;
|
||||||
|
|
||||||
@TempDir
|
@TempDir
|
||||||
public static Path workingDir;
|
public static Path workingDir;
|
||||||
|
|
||||||
@BeforeAll
|
@BeforeAll
|
||||||
public static void setup() throws Exception {
|
public static void setup() throws Exception {
|
||||||
|
|
||||||
// random unassigned HTTP port
|
// random unassigned HTTP port
|
||||||
final int jettyPort = 0;
|
final int jettyPort = 0;
|
||||||
final JettyConfig jettyConfig = JettyConfig.builder().setPort(jettyPort).build();
|
final JettyConfig jettyConfig = JettyConfig.builder().setPort(jettyPort).build();
|
||||||
|
|
||||||
log.info(String.format("working directory: %s", workingDir.toString()));
|
log.info(String.format("working directory: %s", workingDir.toString()));
|
||||||
System.setProperty("solr.log.dir", workingDir.resolve("logs").toString());
|
System.setProperty("solr.log.dir", workingDir.resolve("logs").toString());
|
||||||
|
|
||||||
// create a MiniSolrCloudCluster instance
|
// create a MiniSolrCloudCluster instance
|
||||||
miniCluster = new MiniSolrCloudCluster(2, workingDir.resolve("solr"), jettyConfig);
|
miniCluster = new MiniSolrCloudCluster(2, workingDir.resolve("solr"), jettyConfig);
|
||||||
|
|
||||||
// Upload Solr configuration directory to ZooKeeper
|
// Upload Solr configuration directory to ZooKeeper
|
||||||
String solrZKConfigDir = "src/test/resources/eu/dnetlib/dhp/oa/provision/solr/conf/exploreTestConfig";
|
String solrZKConfigDir = "src/test/resources/eu/dnetlib/dhp/oa/provision/solr/conf/exploreTestConfig";
|
||||||
File configDir = new File(solrZKConfigDir);
|
File configDir = new File(solrZKConfigDir);
|
||||||
|
|
||||||
miniCluster.uploadConfigSet(configDir.toPath(), CONFIG_NAME);
|
miniCluster.uploadConfigSet(configDir.toPath(), CONFIG_NAME);
|
||||||
|
|
||||||
// override settings in the solrconfig include
|
// override settings in the solrconfig include
|
||||||
System.setProperty("solr.tests.maxBufferedDocs", "100000");
|
System.setProperty("solr.tests.maxBufferedDocs", "100000");
|
||||||
System.setProperty("solr.tests.maxIndexingThreads", "-1");
|
System.setProperty("solr.tests.maxIndexingThreads", "-1");
|
||||||
System.setProperty("solr.tests.ramBufferSizeMB", "100");
|
System.setProperty("solr.tests.ramBufferSizeMB", "100");
|
||||||
|
|
||||||
// use non-test classes so RandomizedRunner isn't necessary
|
// use non-test classes so RandomizedRunner isn't necessary
|
||||||
System.setProperty("solr.tests.mergeScheduler", "org.apache.lucene.index.ConcurrentMergeScheduler");
|
System.setProperty("solr.tests.mergeScheduler", "org.apache.lucene.index.ConcurrentMergeScheduler");
|
||||||
System.setProperty("solr.directoryFactory", "solr.RAMDirectoryFactory");
|
System.setProperty("solr.directoryFactory", "solr.RAMDirectoryFactory");
|
||||||
System.setProperty("solr.lock.type", "single");
|
System.setProperty("solr.lock.type", "single");
|
||||||
|
|
||||||
log.info(new ConfigSetAdminRequest.List().process(miniCluster.getSolrClient()).toString());
|
log.info(new ConfigSetAdminRequest.List().process(miniCluster.getSolrClient()).toString());
|
||||||
log
|
log
|
||||||
.info(
|
.info(
|
||||||
CollectionAdminRequest.ClusterStatus
|
CollectionAdminRequest.ClusterStatus
|
||||||
.getClusterStatus()
|
.getClusterStatus()
|
||||||
.process(miniCluster.getSolrClient())
|
.process(miniCluster.getSolrClient())
|
||||||
.toString());
|
.toString());
|
||||||
|
|
||||||
NamedList<Object> res = createCollection(
|
NamedList<Object> res = createCollection(
|
||||||
miniCluster.getSolrClient(), DEFAULT_COLLECTION, 4, 2, 20, CONFIG_NAME);
|
miniCluster.getSolrClient(), DEFAULT_COLLECTION, 4, 2, 20, CONFIG_NAME);
|
||||||
res.forEach(o -> log.info(o.toString()));
|
res.forEach(o -> log.info(o.toString()));
|
||||||
|
|
||||||
miniCluster.getSolrClient().setDefaultCollection(DEFAULT_COLLECTION);
|
miniCluster.getSolrClient().setDefaultCollection(DEFAULT_COLLECTION);
|
||||||
|
|
||||||
log
|
log
|
||||||
.info(
|
.info(
|
||||||
CollectionAdminRequest.ClusterStatus
|
CollectionAdminRequest.ClusterStatus
|
||||||
.getClusterStatus()
|
.getClusterStatus()
|
||||||
.process(miniCluster.getSolrClient())
|
.process(miniCluster.getSolrClient())
|
||||||
.toString());
|
.toString());
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
@AfterAll
|
@AfterAll
|
||||||
public static void shutDown() throws Exception {
|
public static void shutDown() throws Exception {
|
||||||
miniCluster.shutdown();
|
miniCluster.shutdown();
|
||||||
FileUtils.deleteDirectory(workingDir.toFile());
|
FileUtils.deleteDirectory(workingDir.toFile());
|
||||||
}
|
}
|
||||||
|
|
||||||
protected static NamedList<Object> createCollection(CloudSolrClient client, String name, int numShards,
|
protected static NamedList<Object> createCollection(CloudSolrClient client, String name, int numShards,
|
||||||
int replicationFactor, int maxShardsPerNode, String configName) throws Exception {
|
int replicationFactor, int maxShardsPerNode, String configName) throws Exception {
|
||||||
ModifiableSolrParams modParams = new ModifiableSolrParams();
|
ModifiableSolrParams modParams = new ModifiableSolrParams();
|
||||||
modParams.set(CoreAdminParams.ACTION, CollectionParams.CollectionAction.CREATE.name());
|
modParams.set(CoreAdminParams.ACTION, CollectionParams.CollectionAction.CREATE.name());
|
||||||
modParams.set("name", name);
|
modParams.set("name", name);
|
||||||
modParams.set("numShards", numShards);
|
modParams.set("numShards", numShards);
|
||||||
modParams.set("replicationFactor", replicationFactor);
|
modParams.set("replicationFactor", replicationFactor);
|
||||||
modParams.set("collection.configName", configName);
|
modParams.set("collection.configName", configName);
|
||||||
modParams.set("maxShardsPerNode", maxShardsPerNode);
|
modParams.set("maxShardsPerNode", maxShardsPerNode);
|
||||||
QueryRequest request = new QueryRequest(modParams);
|
QueryRequest request = new QueryRequest(modParams);
|
||||||
request.setPath("/admin/collections");
|
request.setPath("/admin/collections");
|
||||||
return client.request(request);
|
return client.request(request);
|
||||||
}
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
|
||||||
2
pom.xml
2
pom.xml
|
|
@ -753,7 +753,7 @@
|
||||||
<mockito-core.version>3.3.3</mockito-core.version>
|
<mockito-core.version>3.3.3</mockito-core.version>
|
||||||
<mongodb.driver.version>3.4.2</mongodb.driver.version>
|
<mongodb.driver.version>3.4.2</mongodb.driver.version>
|
||||||
<vtd.version>[2.12,3.0)</vtd.version>
|
<vtd.version>[2.12,3.0)</vtd.version>
|
||||||
<dhp-schemas.version>[2.8.20]</dhp-schemas.version>
|
<dhp-schemas.version>[2.8.21]</dhp-schemas.version>
|
||||||
<dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version>
|
<dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version>
|
||||||
<dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version>
|
<dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version>
|
||||||
<dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>
|
<dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>
|
||||||
|
|
|
||||||
Loading…
Reference in New Issue