forked from D-Net/dnet-hadoop
[BipFinder] create action set for the measures at the level of the result
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da5f6260aa
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c5739c4266
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@ -1,7 +1,7 @@
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package eu.dnetlib.dhp.actionmanager.bipfinder;
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import static eu.dnetlib.dhp.actionmanager.createunresolvedentities.Constants.*;
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import static eu.dnetlib.dhp.actionmanager.common.Constants.*;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.io.Serializable;
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@ -16,16 +16,16 @@ import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.api.java.function.MapGroupsFunction;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.Row;
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import org.apache.spark.sql.SparkSession;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.actionmanager.common.BipDeserialize;
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import eu.dnetlib.dhp.actionmanager.common.BipScore;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.common.HdfsSupport;
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import eu.dnetlib.dhp.schema.action.AtomicAction;
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@ -1,11 +1,13 @@
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package eu.dnetlib.dhp.actionmanager.bipfinder;
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package eu.dnetlib.dhp.actionmanager.common;
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import java.io.Serializable;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.List;
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import eu.dnetlib.dhp.actionmanager.bipfinder.Score;
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/**
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* Class that maps the model of the bipFinder! input data.
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* Only needed for deserialization purposes
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@ -1,9 +1,11 @@
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package eu.dnetlib.dhp.actionmanager.bipfinder;
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package eu.dnetlib.dhp.actionmanager.common;
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import java.io.Serializable;
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import java.util.List;
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import eu.dnetlib.dhp.actionmanager.bipfinder.Score;
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/**
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* Rewriting of the bipFinder input data by extracting the identifier of the result (doi)
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*/
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@ -1,5 +1,5 @@
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package eu.dnetlib.dhp.actionmanager.bipfinder;
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package eu.dnetlib.dhp.actionmanager.common;
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import java.util.Optional;
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@ -1,49 +0,0 @@
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package eu.dnetlib.dhp.actionmanager.createunresolvedentities;
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import java.util.Optional;
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SparkSession;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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public class Constants {
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public static final String DOI = "doi";
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public static final String UPDATE_DATA_INFO_TYPE = "update";
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public static final String UPDATE_SUBJECT_FOS_CLASS_ID = "subject:fos";
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public static final String UPDATE_CLASS_NAME = "Inferred by OpenAIRE";
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public static final String UPDATE_MEASURE_BIP_CLASS_ID = "measure:bip";
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public static final String FOS_CLASS_ID = "FOS";
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public static final String FOS_CLASS_NAME = "Fields of Science and Technology classification";
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public static final String NULL = "NULL";
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public static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private Constants() {
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}
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public static Boolean isSparkSessionManaged(ArgumentApplicationParser parser) {
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return Optional
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.ofNullable(parser.get("isSparkSessionManaged"))
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.map(Boolean::valueOf)
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.orElse(Boolean.TRUE);
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}
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public static <R> Dataset<R> readPath(
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SparkSession spark, String inputPath, Class<R> clazz) {
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return spark
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.read()
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.textFile(inputPath)
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.map((MapFunction<String, R>) value -> OBJECT_MAPPER.readValue(value, clazz), Encoders.bean(clazz));
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}
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}
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@ -1,8 +1,8 @@
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package eu.dnetlib.dhp.actionmanager.createunresolvedentities;
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import static eu.dnetlib.dhp.actionmanager.createunresolvedentities.Constants.*;
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import static eu.dnetlib.dhp.actionmanager.createunresolvedentities.Constants.UPDATE_CLASS_NAME;
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import static eu.dnetlib.dhp.actionmanager.common.Constants.*;
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import static eu.dnetlib.dhp.actionmanager.common.Constants.UPDATE_CLASS_NAME;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.io.Serializable;
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@ -11,7 +11,6 @@ import java.util.Optional;
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import java.util.stream.Collectors;
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import org.apache.commons.io.IOUtils;
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import org.apache.hadoop.hdfs.client.HdfsUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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@ -1,7 +1,7 @@
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package eu.dnetlib.dhp.actionmanager.createunresolvedentities;
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import static eu.dnetlib.dhp.actionmanager.createunresolvedentities.Constants.*;
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import static eu.dnetlib.dhp.actionmanager.common.Constants.*;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.io.Serializable;
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@ -1,7 +1,7 @@
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package eu.dnetlib.dhp.actionmanager.createunresolvedentities;
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import static eu.dnetlib.dhp.actionmanager.createunresolvedentities.Constants.*;
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import static eu.dnetlib.dhp.actionmanager.common.Constants.*;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.io.Serializable;
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