From a8ac79fa25636a5a7995c148f5536d342feafbc6 Mon Sep 17 00:00:00 2001 From: Sandro La Bruzzo Date: Wed, 15 Feb 2023 10:29:13 +0100 Subject: [PATCH] Added citation relation on crossref Mapping --- .../doiboost/crossref/Crossref2Oaf.scala | 49 + .../crossref/publication_license_embargo.json | 3006 ++++++++--------- .../crossref/CrossrefMappingTest.scala | 43 + 3 files changed, 1564 insertions(+), 1534 deletions(-) diff --git a/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/Crossref2Oaf.scala b/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/Crossref2Oaf.scala index 7fb10863f6..a271f4c338 100644 --- a/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/Crossref2Oaf.scala +++ b/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/Crossref2Oaf.scala @@ -309,6 +309,8 @@ case object Crossref2Oaf { result } + + def generateAuhtor(given: String, family: String, orcid: String, index: Int): Author = { val a = new Author a.setName(given) @@ -370,10 +372,57 @@ case object Crossref2Oaf { case dataset: Dataset => convertDataset(dataset) } + + val doisReference:List[String] = for { + JObject(reference_json) <- json \ "reference" + JField("DOI", JString(doi_json)) <- reference_json + } yield doi_json + + + + if (doisReference!= null && doisReference.nonEmpty) { + val citation_relations:List[Relation] = generateCitationRelations(doisReference, result) + resultList = resultList ::: citation_relations + } resultList = resultList ::: List(result) resultList } + + + private def createCiteRelation(source:Result, targetPid:String, targetPidType:String) :List[Relation] = { + + + val targetId = IdentifierFactory.idFromPid("50",targetPidType, targetPid, true) + + val from = new Relation + from.setSource(source.getId) + from.setTarget(targetId) + from.setRelType(ModelConstants.RESULT_RESULT) + from.setRelClass(ModelConstants.CITES) + from.setSubRelType(ModelConstants.CITATION) + from.setCollectedfrom(source.getCollectedfrom) + from.setDataInfo(source.getDataInfo) + from.setLastupdatetimestamp(source.getLastupdatetimestamp) + + + val to = new Relation + to.setTarget(source.getId) + to.setSource(targetId) + to.setRelType(ModelConstants.RESULT_RESULT) + to.setRelClass(ModelConstants.IS_CITED_BY) + to.setSubRelType(ModelConstants.CITATION) + to.setCollectedfrom(source.getCollectedfrom) + to.setDataInfo(source.getDataInfo) + to.setLastupdatetimestamp(source.getLastupdatetimestamp) + + List(from,to) + } + + def generateCitationRelations(dois:List[String], result:Result):List[Relation] = { + dois.flatMap(d => createCiteRelation(result, d, "doi")) + } + def mappingFunderToRelations( funders: List[mappingFunder], sourceId: String, diff --git a/dhp-workflows/dhp-doiboost/src/test/resources/eu/dnetlib/doiboost/crossref/publication_license_embargo.json b/dhp-workflows/dhp-doiboost/src/test/resources/eu/dnetlib/doiboost/crossref/publication_license_embargo.json index 788946fead..b66147b2d6 100644 --- a/dhp-workflows/dhp-doiboost/src/test/resources/eu/dnetlib/doiboost/crossref/publication_license_embargo.json +++ b/dhp-workflows/dhp-doiboost/src/test/resources/eu/dnetlib/doiboost/crossref/publication_license_embargo.json @@ -1,1537 +1,1475 @@ { -"indexed": { -"date-parts": [ -[ -2021, -7, -2 -] -], -"date-time": "2021-07-02T07:30:10Z", -"timestamp": 1625211010708 -}, -"reference-count": 83, -"publisher": "Springer Science and Business Media LLC", -"issue": "5", -"license": [ -{ -"URL": "https://www.springer.com/tdm", -"start": { -"date-parts": [ -[ -2021, -2, -22 -] -], -"date-time": "2021-02-22T00:00:00Z", -"timestamp": 1613952000000 -}, -"delay-in-days": 0, -"content-version": "tdm" -}, -{ -"URL": "https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model", -"start": { -"date-parts": [ -[ -2021, -2, -22 -] -], -"date-time": "2021-02-22T00:00:00Z", -"timestamp": 1613952000000 -}, -"delay-in-days": 0, -"content-version": "vor" -} -], -"content-domain": { -"domain": [ -"link.springer.com" -], -"crossmark-restriction": false -}, -"short-container-title": [ -"Nat Astron" -], -"published-print": { -"date-parts": [ -[ -2021, -5 -] -] -}, -"DOI": "10.1038/s41550-020-01295-8", -"type": "journal-article", -"created": { -"date-parts": [ -[ -2021, -2, -22 -] -], -"date-time": "2021-02-22T17:03:42Z", -"timestamp": 1614013422000 -}, -"page": "510-518", -"update-policy": "http://dx.doi.org/10.1007/springer_crossmark_policy", -"source": "Crossref", -"is-referenced-by-count": 6, -"title": [ -"A tidal disruption event coincident with a high-energy neutrino" -], -"prefix": "10.1038", -"volume": "5", -"author": [ -{ -"ORCID": "http://orcid.org/0000-0003-2434-0387", -"authenticated-orcid": false, -"given": "Robert", -"family": "Stein", -"sequence": "first", -"affiliation": [ - 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A.", -"family": "Miller-Jones", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Sara", -"family": "Frederick", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0003-0466-3779", -"authenticated-orcid": false, -"given": "Itai", -"family": "Sfaradi", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Michael F.", -"family": "Bietenholz", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-5936-1156", -"authenticated-orcid": false, -"given": "Assaf", -"family": "Horesh", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Rob", -"family": "Fender", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0003-2403-4582", -"authenticated-orcid": false, -"given": "Simone", -"family": "Garrappa", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-2184-6430", -"authenticated-orcid": false, -"given": "Tomás", -"family": "Ahumada", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Igor", -"family": "Andreoni", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Justin", -"family": "Belicki", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0001-8018-5348", -"authenticated-orcid": false, -"given": "Eric C.", -"family": "Bellm", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Markus", -"family": "Böttcher", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Valery", -"family": "Brinnel", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Rick", -"family": "Burruss", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0003-1673-970X", -"authenticated-orcid": false, -"given": "S. Bradley", -"family": "Cenko", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-8262-2924", -"authenticated-orcid": false, -"given": "Michael W.", -"family": "Coughlin", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0003-2292-0441", -"authenticated-orcid": false, -"given": "Virginia", -"family": "Cunningham", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Andrew", -"family": "Drake", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Glennys R.", -"family": "Farrar", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Michael", -"family": "Feeney", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Ryan J.", -"family": "Foley", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-3653-5598", -"authenticated-orcid": false, -"given": "Avishay", -"family": "Gal-Yam", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "V. Zach", -"family": "Golkhou", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-4163-4996", -"authenticated-orcid": false, -"given": "Ariel", -"family": "Goobar", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-3168-0139", -"authenticated-orcid": false, -"given": "Matthew J.", -"family": "Graham", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Erica", -"family": "Hammerstein", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0003-3367-3415", -"authenticated-orcid": false, -"given": "George", -"family": "Helou", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-9878-7889", -"authenticated-orcid": false, -"given": "Tiara", -"family": "Hung", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Mansi M.", -"family": "Kasliwal", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-5740-7747", -"authenticated-orcid": false, -"given": "Charles D.", -"family": "Kilpatrick", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-5105-344X", -"authenticated-orcid": false, -"given": "Albert K. H.", -"family": "Kong", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-6540-1484", -"authenticated-orcid": false, -"given": "Thomas", -"family": "Kupfer", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0003-2451-5482", -"authenticated-orcid": false, -"given": "Russ R.", -"family": "Laher", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0003-2242-0244", -"authenticated-orcid": false, -"given": "Ashish A.", -"family": "Mahabal", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-8532-9395", -"authenticated-orcid": false, -"given": "Frank J.", -"family": "Masci", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0003-0280-7484", -"authenticated-orcid": false, -"given": "Jannis", -"family": "Necker", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0001-8342-6274", -"authenticated-orcid": false, -"given": "Jakob", -"family": "Nordin", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Daniel A.", -"family": "Perley", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-8121-2560", -"authenticated-orcid": false, -"given": "Mickael", -"family": "Rigault", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-7788-628X", -"authenticated-orcid": false, -"given": "Simeon", -"family": "Reusch", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Hector", -"family": "Rodriguez", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0002-7559-315X", -"authenticated-orcid": false, -"given": "César", -"family": "Rojas-Bravo", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0001-7648-4142", -"authenticated-orcid": false, -"given": "Ben", -"family": "Rusholme", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0003-4401-0430", -"authenticated-orcid": false, -"given": "David L.", -"family": "Shupe", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0001-9898-5597", -"authenticated-orcid": false, -"given": "Leo P.", -"family": "Singer", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0003-1546-6615", -"authenticated-orcid": false, -"given": "Jesper", -"family": "Sollerman", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Maayane T.", -"family": "Soumagnac", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Daniel", -"family": "Stern", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Kirsty", -"family": "Taggart", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Jakob", -"family": "van Santen", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Charlotte", -"family": "Ward", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"given": "Patrick", -"family": "Woudt", -"sequence": "additional", -"affiliation": [ - -] -}, -{ -"ORCID": "http://orcid.org/0000-0001-6747-8509", -"authenticated-orcid": false, -"given": "Yuhan", -"family": "Yao", -"sequence": "additional", -"affiliation": [ - -] -} -], -"member": "297", -"published-online": { -"date-parts": [ -[ -2021, -2, -22 -] -] -}, -"reference": [ -{ -"key": "1295_CR1", -"doi-asserted-by": "crossref", -"first-page": "P03012", -"DOI": "10.1088/1748-0221/12/03/P03012", -"volume": "12", -"author": "MG Aartsen", -"year": "2017", -"unstructured": "Aartsen, M. 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Neutrino emissions from tidal disruption remnants. Astrophys. J. 886, 114 (2019).", -"journal-title": "Astrophys. J." -}, -{ -"key": "1295_CR8", -"unstructured": "Farrar, G. R. & Piran, T. Tidal disruption jets as the source of Ultra-High Energy Cosmic Rays. Preprint at https://arxiv.org/abs/1411.0704 (2014)." -}, -{ -"key": "1295_CR9", -"doi-asserted-by": "crossref", -"first-page": "3", -"DOI": "10.3847/1538-4357/aa6344", -"volume": "838", -"author": "N Senno", -"year": "2017", -"unstructured": "Senno, N., Murase, K. & Mészáros, P. High-energy neutrino flares from X-ray bright and dark tidal disruption events. Astrophys. J. 838, 3 (2017).", -"journal-title": "Astrophys. J." -}, -{ -"key": "1295_CR10", -"doi-asserted-by": "crossref", -"first-page": "083005", -"DOI": "10.1103/PhysRevD.93.083005", -"volume": "93", -"author": "XY Wang", -"year": "2016", -"unstructured": "Wang, X. Y. & Liu, R. Y. 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J. 878, 82 (2019).", -"journal-title": "Astrophys. J." -}, -{ -"key": "1295_CR18", -"doi-asserted-by": "crossref", -"first-page": "5655", -"DOI": "10.1093/mnras/staa192", -"volume": "492", -"author": "A Mummery", -"year": "2020", -"unstructured": "Mummery, A. & Balbus, S. A. The spectral evolution of disc dominated tidal disruption events. Mon. Not. R. Astron. Soc. 492, 5655–5674 (2020).", -"journal-title": "Mon. Not. R. Astron. Soc." -}, -{ -"key": "1295_CR19", -"doi-asserted-by": "crossref", -"first-page": "184", -"DOI": "10.1088/0004-637X/764/2/184", -"volume": "764", -"author": "NJ McConnell", -"year": "2013", -"unstructured": "McConnell, N. J. & Ma, C. P. Revisiting the scaling relations of black hole masses and host galaxy properties. Astrophys. J. 764, 184 (2013).", -"journal-title": "Astrophys. 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