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Merge branch 'deduptesting' of code-repo.d4science.org:D-Net/dnet-hadoop into deduptesting

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miconis 2020-04-16 12:13:58 +02:00
parent cd4d9a148f b39ff36c16
commit 9b36458b6a
1 changed files with 44 additions and 23 deletions
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67
dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/scan/oozie_app/workflow.xml
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@ -28,6 +28,28 @@
<name>sparkExecutorCores</name> <name>sparkExecutorCores</name>
<description>number of cores used by single executor</description> <description>number of cores used by single executor</description>
</property> </property>
<property>
<name>oozieActionShareLibForSpark2</name>
<description>oozie action sharelib for spark 2.*</description>
</property>
<property>
<name>spark2ExtraListeners</name>
<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
<description>spark 2.* extra listeners classname</description>
</property>
<property>
<name>spark2SqlQueryExecutionListeners</name>
<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
<description>spark 2.* sql query execution listeners classname</description>
</property>
<property>
<name>spark2YarnHistoryServerAddress</name>
<description>spark 2.* yarn history server address</description>
</property>
<property>
<name>spark2EventLogDir</name>
<description>spark 2.* event log dir location</description>
</property>
</parameters> </parameters>
<global> <global>
@ -42,6 +64,10 @@
<name>oozie.launcher.mapred.job.queue.name</name> <name>oozie.launcher.mapred.job.queue.name</name>
<value>${oozieLauncherQueueName}</value> <value>${oozieLauncherQueueName}</value>
</property> </property>
<property>
<name>oozie.action.sharelib.for.spark</name>
<value>${oozieActionShareLibForSpark2}</value>
</property>
</configuration> </configuration>
</global> </global>
@ -53,20 +79,19 @@
<action name="CreateSimRel"> <action name="CreateSimRel">
<spark xmlns="uri:oozie:spark-action:0.2"> <spark xmlns="uri:oozie:spark-action:0.2">
<prepare>
<delete path="${workingPath}/${actionSetId}/*_simrel"/>
</prepare>
<master>yarn</master> <master>yarn</master>
<mode>cluster</mode> <mode>cluster</mode>
<name>Create Similarity Relations</name> <name>Create Similarity Relations</name>
<class>eu.dnetlib.dhp.oa.dedup.SparkCreateSimRels</class> <class>eu.dnetlib.dhp.oa.dedup.SparkCreateSimRels</class>
<jar>dhp-dedup-openaire-${projectVersion}.jar</jar> <jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
<spark-opts> <spark-opts>
--executor-memory ${sparkExecutorMemory} --executor-memory=${sparkExecutorMemory}
--executor-cores ${sparkExecutorCores} --executor-cores=${sparkExecutorCores}
--driver-memory=${sparkDriverMemory} --driver-memory=${sparkDriverMemory}
--conf spark.extraListeners="com.cloudera.spark.lineage.NavigatorAppListener" --conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners="com.cloudera.spark.lineage.NavigatorQueryListener" --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
</spark-opts> </spark-opts>
<arg>-mt</arg><arg>yarn</arg> <arg>-mt</arg><arg>yarn</arg>
<arg>--i</arg><arg>${graphBasePath}</arg> <arg>--i</arg><arg>${graphBasePath}</arg>
@ -80,21 +105,19 @@
<action name="CreateMergeRel"> <action name="CreateMergeRel">
<spark xmlns="uri:oozie:spark-action:0.2"> <spark xmlns="uri:oozie:spark-action:0.2">
<prepare>
<delete path='${workingPath}/${actionSetId}/*_mergerel'/>
</prepare>
<master>yarn</master> <master>yarn</master>
<mode>cluster</mode> <mode>cluster</mode>
<name>Create Merge Relations</name> <name>Create Merge Relations</name>
<class>eu.dnetlib.dhp.oa.dedup.SparkCreateMergeRels</class> <class>eu.dnetlib.dhp.oa.dedup.SparkCreateMergeRels</class>
<jar>dhp-dedup-openaire-${projectVersion}.jar</jar> <jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
<spark-opts> <spark-opts>
--executor-memory ${sparkExecutorMemory} --executor-memory=${sparkExecutorMemory}
--executor-cores ${sparkExecutorCores} --executor-cores=${sparkExecutorCores}
--driver-memory=${sparkDriverMemory} --driver-memory=${sparkDriverMemory}
--conf spark.extraListeners="com.cloudera.spark.lineage.NavigatorAppListener" --conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners="com.cloudera.spark.lineage.NavigatorQueryListener" --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.sql.warehouse.dir="/user/hive/warehouse" --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
</spark-opts> </spark-opts>
<arg>-mt</arg><arg>yarn</arg> <arg>-mt</arg><arg>yarn</arg>
<arg>--i</arg><arg>${graphBasePath}</arg> <arg>--i</arg><arg>${graphBasePath}</arg>
@ -108,21 +131,19 @@
<action name="CreateDedupRecord"> <action name="CreateDedupRecord">
<spark xmlns="uri:oozie:spark-action:0.2"> <spark xmlns="uri:oozie:spark-action:0.2">
<prepare>
<delete path='${workingPath}/${actionSetId}/*_deduprecord'/>
</prepare>
<master>yarn</master> <master>yarn</master>
<mode>cluster</mode> <mode>cluster</mode>
<name>Create Dedup Record</name> <name>Create Dedup Record</name>
<class>eu.dnetlib.dhp.oa.dedup.SparkCreateDedupRecord</class> <class>eu.dnetlib.dhp.oa.dedup.SparkCreateDedupRecord</class>
<jar>dhp-dedup-openaire-${projectVersion}.jar</jar> <jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
<spark-opts> <spark-opts>
--executor-memory ${sparkExecutorMemory} --executor-memory=${sparkExecutorMemory}
--executor-cores ${sparkExecutorCores} --executor-cores=${sparkExecutorCores}
--driver-memory=${sparkDriverMemory} --driver-memory=${sparkDriverMemory}
--conf spark.extraListeners="com.cloudera.spark.lineage.NavigatorAppListener" --conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners="com.cloudera.spark.lineage.NavigatorQueryListener" --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.sql.warehouse.dir="/user/hive/warehouse" --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
</spark-opts> </spark-opts>
<arg>-mt</arg><arg>yarn</arg> <arg>-mt</arg><arg>yarn</arg>
<arg>--i</arg><arg>${graphBasePath}</arg> <arg>--i</arg><arg>${graphBasePath}</arg>