moving data to impala cluster and creating shadow databases there

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/finalizedb.sh

@@ -12,9 +12,3 @@ export SHADOW=$2
 echo "Updating shadow database"
 hive --database ${SOURCE} -e "show tables" | grep -v WARN | sed "s/^\(.*\)/analyze table ${SOURCE}.\1 compute statistics;/" > foo
 hive -f foo
-hive -e "create database if not exists ${SHADOW}"
-hive --database ${SHADOW} -e "show tables" | grep -v WARN | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" > foo
-hive -f foo
-hive --database ${SOURCE} -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" > foo
-hive -f foo
-echo "Shadow db ready!"

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/monitor.sh

@@ -18,11 +18,3 @@ echo "Creating monitor database"
 cat step20-createMonitorDB.sql | sed s/SOURCE/$1/g | sed s/TARGET/$2/g1 > foo
 hive -f foo
 echo "Impala shell finished"
-
-echo "Updating shadow monitor database"
-hive -e "create database if not exists ${SHADOW}"
-hive --database ${SHADOW} -e "show tables" | grep -v WARN | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" > foo
-hive -f foo
-hive --database ${TARGET} -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${TARGET}.\1;/" > foo
-hive -f foo
-echo "Shadow db ready!"

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/observatory-post.sh

@@ -13,11 +13,3 @@ export SHADOW=$3
 hive --database ${TARGET} -e "show tables" | grep -v WARN | sed "s/\(.*\)/analyze table ${TARGET}.\1 compute statistics;/" > foo
 hive -f foo
 echo "Impala shell finished"
-
-echo "Updating shadow observatory database"
-hive -e "create database if not exists ${SHADOW}"
-hive --database ${SHADOW} -e "show tables" | grep -v WARN | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" > foo
-hive -f foo
-hive -d ${TARGET} -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${TARGET}.\1;/" > foo
-hive -f foo
-echo "Shadow db ready!"

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8.sql

@@ -48,12 +48,10 @@ WHERE d1.datainfo.deletedbyinference = FALSE;
 
 -- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table.
 -- Creating a temporary dual table that will be removed after the following insert
-CREATE TABLE ${stats_db_name}.dual
+CREATE TABLE ${stats_db_name}.dual ( dummy CHAR(1));
-(
+
-    dummy CHAR(1)
+INSERT INTO ${stats_db_name}.dual VALUES ('X');
-);
+
-INSERT INTO ${stats_db_name}.dual
-VALUES ('X');
 INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`,
                                              `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`, `issn_printed`, `issn_online`)
 SELECT 'other',
@@ -73,12 +71,8 @@ FROM ${stats_db_name}.dual
 WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name = 'Unknown Repository');
 DROP TABLE ${stats_db_name}.dual;
 
-UPDATE ${stats_db_name}.datasource_tmp
+UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name = 'Unknown Repository';
-SET name='Other'
+UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation = '-1';
-WHERE name = 'Unknown Repository';
-UPDATE ${stats_db_name}.datasource_tmp
-SET yearofvalidation=null
-WHERE yearofvalidation = '-1';
 
 CREATE TABLE ${stats_db_name}.datasource_languages STORED AS PARQUET AS
 SELECT substr(d.id, 4) AS id, langs.languages AS language
@@ -91,8 +85,7 @@ FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS
 CREATE TABLE ${stats_db_name}.datasource_organizations STORED AS PARQUET AS
 SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
 FROM ${openaire_db_name}.relation r
-WHERE r.reltype = 'datasourceOrganization'
+WHERE r.reltype = 'datasourceOrganization' and r.datainfo.deletedbyinference = false;
-  and r.datainfo.deletedbyinference = false;
 
 -- datasource sources:
 -- where the datasource info have been collected from.
@@ -101,6 +94,6 @@ select substr(d.id, 4) as id, substr(cf.key, 4) as datasource
 from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf
 where d.datainfo.deletedbyinference = false;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results STORED AS PARQUET AS
+CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS
 SELECT datasource AS id, id AS result
 FROM ${stats_db_name}.result_datasources;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml

@@ -365,11 +365,43 @@
             <argument>${observatory_db_shadow_name}</argument>
             <file>observatory-post.sh</file>
         </shell>
-        <ok to="Step22"/>
+        <ok to="step22-copyDataToImpalaCluster"/>
         <error to="Kill"/>
     </action>
 
-    <action name="Step22">
+    <action name="step22-copyDataToImpalaCluster">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>copyDataToImpalaCluster.sh</exec>
+            <argument>${external_stats_db_name}</argument>
+            <argument>${stats_db_name}</argument>
+            <argument>${monitor_db_name}</argument>
+            <argument>${observatory_db_name}</argument>
+            <file>copyDataToImpalaCluster.sh</file>
+        </shell>
+        <ok to="step23-finalizeImpalaCluster"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="step23-finalizeImpalaCluster">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>finalizeImpalaCluster.sh</exec>
+            <argument>${stats_db_name}</argument>
+            <argument>${stats_db_shadow_name}</argument>
+            <argument>${monitor_db_name}</argument>
+            <argument>${monitor_db_shadow_name}</argument>
+            <argument>${observatory_db_name}</argument>
+            <argument>${observatory_db_shadow_name}</argument>
+            <file>finalizeImpalaCluster.sh</file>
+        </shell>
+        <ok to="Step24-updateCache"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="Step24-updateCache">
         <shell xmlns="uri:oozie:shell-action:0.1">
             <job-tracker>${jobTracker}</job-tracker>
             <name-node>${nameNode}</name-node>