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Merge pull request 'implemented relation to irish funder from a Json list' (#344) from irish_funder into beta

Reviewed-on: D-Net/dnet-hadoop#344
This commit is contained in:
Claudio Atzori 2023-10-06 14:26:54 +02:00
commit 774e874d18
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[
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"uri": "http://dx.doi.org/10.13039/501100022610",
"name": "Breast Cancer Ireland",
"synonym": []
},
{
"id": "501100022728",
"uri": "http://dx.doi.org/10.13039/501100022728",
"name": "Munster Technological University",
"synonym": []
},
{
"id": "501100022729",
"uri": "http://dx.doi.org/10.13039/501100022729",
"name": "Institute of Technology, Tralee",
"synonym": []
},
{
"id": "501100023273",
"uri": "http://dx.doi.org/10.13039/501100023273",
"name": "HRB Clinical Research Facility Galway",
"synonym": []
},
{
"id": "501100023378",
"uri": "http://dx.doi.org/10.13039/501100023378",
"name": "Lauritzson Foundation",
"synonym": []
},
{
"id": "501100023551",
"uri": "http://dx.doi.org/10.13039/501100023551",
"name": "Cystic Fibrosis Ireland",
"synonym": []
},
{
"id": "501100023970",
"uri": "http://dx.doi.org/10.13039/501100023970",
"name": "Tyndall National Institute",
"synonym": []
},
{
"id": "501100024094",
"uri": "http://dx.doi.org/10.13039/501100024094",
"name": "Raidi\u00f3 Teilif\u00eds \u00c9ireann",
"synonym": []
},
{
"id": "501100024242",
"uri": "http://dx.doi.org/10.13039/501100024242",
"name": "Synthesis and Solid State Pharmaceutical Centre",
"synonym": []
},
{
"id": "501100024313",
"uri": "http://dx.doi.org/10.13039/501100024313",
"name": "Irish Rugby Football Union",
"synonym": []
},
{
"id": "100007490",
"uri": "http://dx.doi.org/10.13039/100007490",
"name": "Bausch and Lomb Ireland",
"synonym": []
},
{
"id": "100007819",
"uri": "http://dx.doi.org/10.13039/100007819",
"name": "Allergan",
"synonym": []
},
{
"id": "100010547",
"uri": "http://dx.doi.org/10.13039/100010547",
"name": "Irish Youth Justice Service",
"synonym": []
},
{
"id": "100012733",
"uri": "http://dx.doi.org/10.13039/100012733",
"name": "National Parks and Wildlife Service",
"synonym": []
},
{
"id": "100015278",
"uri": "http://dx.doi.org/10.13039/100015278",
"name": "Pfizer Healthcare Ireland",
"synonym": []
},
{
"id": "100017144",
"uri": "http://dx.doi.org/10.13039/100017144",
"name": "Shell E and P Ireland",
"synonym": []
},
{
"id": "100022895",
"uri": "http://dx.doi.org/10.13039/100022895",
"name": "Health Research Institute, University of Limerick",
"synonym": []
},
{
"id": "501100001599",
"uri": "http://dx.doi.org/10.13039/501100001599",
"name": "National Council for Forest Research and Development",
"synonym": []
},
{
"id": "501100006554",
"uri": "http://dx.doi.org/10.13039/501100006554",
"name": "IDA Ireland",
"synonym": []
},
{
"id": "501100011626",
"uri": "http://dx.doi.org/10.13039/501100011626",
"name": "Energy Policy Research Centre, Economic and Social Research Institute",
"synonym": []
},
{
"id": "501100014531",
"uri": "http://dx.doi.org/10.13039/501100014531",
"name": "Physical Education and Sport Sciences Department, University of Limerick",
"synonym": []
},
{
"id": "501100014745",
"uri": "http://dx.doi.org/10.13039/501100014745",
"name": "APC Microbiome Institute",
"synonym": []
},
{
"id": "501100014826",
"uri": "http://dx.doi.org/10.13039/501100014826",
"name": "ADAPT - Centre for Digital Content Technology",
"synonym": []
},
{
"id": "501100020570",
"uri": "http://dx.doi.org/10.13039/501100020570",
"name": "College of Medicine, Nursing and Health Sciences, National University of Ireland, Galway",
"synonym": []
},
{
"id": "501100020871",
"uri": "http://dx.doi.org/10.13039/501100020871",
"name": "Bernal Institute, University of Limerick",
"synonym": []
},
{
"id": "501100023852",
"uri": "http://dx.doi.org/10.13039/501100023852",
"name": "Moore Institute for Research in the Humanities and Social Studies, University of Galway",
"synonym": []
}
]

View File

@ -16,6 +16,7 @@ import org.slf4j.{Logger, LoggerFactory}
import java.util
import scala.collection.JavaConverters._
import scala.collection.mutable
import scala.io.Source
import scala.util.matching.Regex
case class CrossrefDT(doi: String, json: String, timestamp: Long) {}
@ -30,11 +31,22 @@ case class mappingAuthor(
affiliation: Option[mappingAffiliation]
) {}
case class funderInfo(id:String,uri:String, name:String,synonym:List[String] ) {}
case class mappingFunder(name: String, DOI: Option[String], award: Option[List[String]]) {}
case object Crossref2Oaf {
val logger: Logger = LoggerFactory.getLogger(Crossref2Oaf.getClass)
val irishFunder: List[funderInfo] = {
val s = Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/crossref/irish_funder.json")).mkString
implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
lazy val json: org.json4s.JValue = parse(s)
json.extract[List[funderInfo]]
}
val mappingCrossrefType = Map(
"book-section" -> "publication",
"book" -> "publication",
@ -88,6 +100,11 @@ case object Crossref2Oaf {
"report" -> "0017 Report"
)
def getIrishId(doi:String):Option[String] = {
val id =doi.split("/").last
irishFunder.find(f => id.equalsIgnoreCase(f.id) || (f.synonym.nonEmpty && f.synonym.exists(s => s.equalsIgnoreCase(id)))).map(f => f.id)
}
def mappingResult(result: Result, json: JValue, cobjCategory: String): Result = {
implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
@ -467,6 +484,14 @@ case object Crossref2Oaf {
if (funders != null)
funders.foreach(funder => {
if (funder.DOI.isDefined && funder.DOI.get.nonEmpty) {
if (getIrishId(funder.DOI.get).isDefined) {
val nsPrefix = getIrishId(funder.DOI.get).get.padTo(12, '_')
val targetId = getProjectId(nsPrefix, "1e5e62235d094afd01cd56e65112fc63")
queue += generateRelation(sourceId, targetId, ModelConstants.IS_PRODUCED_BY)
queue += generateRelation(targetId, sourceId, ModelConstants.PRODUCES)
}
funder.DOI.get match {
case "10.13039/100010663" | "10.13039/100010661" | "10.13039/501100007601" | "10.13039/501100000780" |
"10.13039/100010665" =>

View File

@ -50,7 +50,7 @@ class CrossrefMappingTest {
}
}
def checkRelation(generatedOAF: List[Oaf]): Unit = {
def checkRelation(generatedOAF: List[Oaf]): Unit = {
val rels: List[Relation] =
generatedOAF.filter(p => p.isInstanceOf[Relation]).asInstanceOf[List[Relation]]