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addded command line params to allow hive actions to run

This commit is contained in:
Antonis Lempesis 2022-07-29 16:36:20 +03:00
parent 0353f93d54
commit 6fc9ef53f6
3 changed files with 16 additions and 10 deletions
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19
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/contexts.sh
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@ -9,6 +9,8 @@ fi
CONTEXT_API=$1 CONTEXT_API=$1
TARGET_DB=$2 TARGET_DB=$2
export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=4831838208 -hiveconf spark.yarn.executor.memoryOverhead=450"
TMP=/tmp/stats-update-`tr -dc A-Za-z0-9 </dev/urandom | head -c 6` TMP=/tmp/stats-update-`tr -dc A-Za-z0-9 </dev/urandom | head -c 6`
echo "Downloading context ids" echo "Downloading context ids"
@ -29,17 +31,20 @@ hdfs dfs -copyFromLocal categories.csv ${TMP}
hdfs dfs -copyFromLocal concepts.csv ${TMP} hdfs dfs -copyFromLocal concepts.csv ${TMP}
hdfs dfs -chmod -R 777 ${TMP} hdfs dfs -chmod -R 777 ${TMP}
export HADOOP_USER="antonis.lempesis"
export HADOOP_USER_NAME="antonis.lempesis"
echo "Creating and populating impala tables" echo "Creating and populating impala tables"
hive -e "create table ${TARGET_DB}.context (id string, name string) row format delimited fields terminated by ','" hive $HIVE_OPTS -e "create table ${TARGET_DB}.context (id string, name string) row format delimited fields terminated by ','"
hive -e "create table ${TARGET_DB}.category (context string, id string, name string) row format delimited fields terminated by ','" hive $HIVE_OPTS -e "create table ${TARGET_DB}.category (context string, id string, name string) row format delimited fields terminated by ','"
hive -e "create table ${TARGET_DB}.concept (category string, id string, name string) row format delimited fields terminated by ','" hive $HIVE_OPTS -e "create table ${TARGET_DB}.concept (category string, id string, name string) row format delimited fields terminated by ','"
hive -e "load data inpath '${TMP}/contexts.csv' into table ${TARGET_DB}.context" hive $HIVE_OPTS -e "load data inpath '${TMP}/contexts.csv' into table ${TARGET_DB}.context"
hive -e "load data inpath '${TMP}/categories.csv' into table ${TARGET_DB}.category" hive $HIVE_OPTS -e "load data inpath '${TMP}/categories.csv' into table ${TARGET_DB}.category"
hive -e "load data inpath '${TMP}/concepts.csv' into table ${TARGET_DB}.concept" hive $HIVE_OPTS -e "load data inpath '${TMP}/concepts.csv' into table ${TARGET_DB}.concept"
echo "Cleaning up" echo "Cleaning up"
rm concepts.csv rm concepts.csv
rm categories.csv rm categories.csv
rm contexts.csv rm contexts.csv
echo "Finito!" echo "Finito!"

3
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/indicators.sh
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@ -8,7 +8,8 @@ fi
export TARGET=$1 export TARGET=$1
export SCRIPT_PATH=$2 export SCRIPT_PATH=$2
export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms" export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=4831838208 -hiveconf spark.yarn.executor.memoryOverhead=450"
export HADOOP_USER="antonis.lempesis"
echo "Getting file from " $SCRIPT_PATH echo "Getting file from " $SCRIPT_PATH
hdfs dfs -copyToLocal $SCRIPT_PATH hdfs dfs -copyToLocal $SCRIPT_PATH

4
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml
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@ -74,7 +74,7 @@
</configuration> </configuration>
</global> </global>
<start to="Step16-createIndicatorsTables"/> <start to="Contexts"/>
<kill name="Kill"> <kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message> <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
@ -280,7 +280,7 @@
<argument>${wf:appPath()}/scripts/step16-createIndicatorsTables.sql</argument> <argument>${wf:appPath()}/scripts/step16-createIndicatorsTables.sql</argument>
<file>indicators.sh</file> <file>indicators.sh</file>
</shell> </shell>
<ok to="End"/> <ok to="Step16_1-definitions"/>
<error to="Kill"/> <error to="Kill"/>
</action> </action>