forked from D-Net/dnet-hadoop
changed in the testing classes
This commit is contained in:
parent
bc8611a95a
commit
5c8533d1a1
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@ -151,10 +151,9 @@ public class DumpJobTest {
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SparkDumpCommunityProducts.main(new String[] {
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"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/dataset",
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"-outputPath", workingDir.toString() + "/result",
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
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"-dumpTableName", "eu.dnetlib.dhp.schema.dump.oaf.Dataset",
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"-communityMap", new Gson().toJson(map)
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});
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@ -162,12 +161,12 @@ public class DumpJobTest {
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.Dataset> tmp = sc
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.textFile(workingDir.toString() + "/dataset")
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.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.Dataset.class));
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.Result> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.Result.class));
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org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.Dataset> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.Dataset.class));
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org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.Result> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.Result.class));
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Assertions.assertEquals(90, verificationDataset.count());
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// verificationDataset.show(false);
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@ -198,7 +197,9 @@ public class DumpJobTest {
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Assertions.assertTrue(verificationDataset.filter("size(context) > 0").count() == 90);
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verificationDataset.select("instance.type").show(false);
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Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
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// verificationDataset.select("instance.type").show(false);
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//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
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@ -214,10 +215,9 @@ public class DumpJobTest {
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SparkDumpCommunityProducts.main(new String[] {
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"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/publication",
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"-outputPath", workingDir.toString() + "/result",
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Publication",
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"-dumpTableName", "eu.dnetlib.dhp.schema.dump.oaf.Publication",
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"-communityMap", new Gson().toJson(map)
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});
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@ -225,16 +225,18 @@ public class DumpJobTest {
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.Publication> tmp = sc
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.textFile(workingDir.toString() + "/publication")
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.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.Publication.class));
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.Result> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.Result.class));
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org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.Publication> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.Publication.class));
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org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.Result> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.Result.class));
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Assertions.assertEquals(76, verificationDataset.count());
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verificationDataset.show(false);
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Assertions.assertEquals(76, verificationDataset.filter("type = 'publication'").count());
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//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
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}
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@ -249,10 +251,9 @@ public class DumpJobTest {
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SparkDumpCommunityProducts.main(new String[] {
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"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/software",
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"-outputPath", workingDir.toString() + "/result",
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Software",
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"-dumpTableName", "eu.dnetlib.dhp.schema.dump.oaf.Software",
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"-communityMap", new Gson().toJson(map)
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});
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@ -260,14 +261,16 @@ public class DumpJobTest {
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.Software> tmp = sc
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.textFile(workingDir.toString() + "/software")
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.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.Software.class));
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.Result> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.Result.class));
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org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.Software> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.Software.class));
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org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.Result> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.Result.class));
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Assertions.assertEquals(6, verificationDataset.count());
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Assertions.assertEquals(6, verificationDataset.filter("type = 'software'").count());
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verificationDataset.show(false);
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//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
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@ -284,10 +287,9 @@ public class DumpJobTest {
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SparkDumpCommunityProducts.main(new String[] {
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"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/orp",
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"-outputPath", workingDir.toString() + "/result",
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct",
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"-dumpTableName", "eu.dnetlib.dhp.schema.dump.oaf.OtherResearchProduct",
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"-communityMap", new Gson().toJson(map)
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});
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@ -295,14 +297,16 @@ public class DumpJobTest {
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.OtherResearchProduct> tmp = sc
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.textFile(workingDir.toString() + "/orp")
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.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.OtherResearchProduct.class));
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.Result> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.Result.class));
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org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.OtherResearchProduct> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.OtherResearchProduct.class));
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org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.Result> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.Result.class));
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Assertions.assertEquals(3, verificationDataset.count());
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Assertions.assertEquals(3, verificationDataset.filter("type = 'other'").count());
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verificationDataset.show(false);
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//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
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@ -24,6 +24,7 @@ import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import com.google.gson.Gson;
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import eu.dnetlib.dhp.schema.dump.oaf.Result;
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import eu.dnetlib.dhp.schema.dump.oaf.Software;
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public class SplitForCommunityTest {
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@ -62,7 +63,7 @@ public class SplitForCommunityTest {
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map.put("dh-ch", "Digital Humanities and Cultural Heritage");
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map.put("science-innovation-policy", "Science and Innovation Policy Studies");
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map.put("covid-19", "COVID-19");
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map.put("enrmaps", "Energy Research");
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map.put("enermaps", "Energy Research");
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map.put("epos", "EPOS");
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}
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@ -149,28 +150,27 @@ public class SplitForCommunityTest {
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public void test1() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/splitForCommunity/software")
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/splitForCommunity")
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.getPath();
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SparkSplitForCommunity.main(new String[] {
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SparkSplitForCommunity2.main(new String[] {
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"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/split",
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.dump.oaf.Software",
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"-communityMap", new Gson().toJson(map)
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Software> tmp = sc
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JavaRDD<Result> tmp = sc
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.textFile(workingDir.toString() + "/split/dh-ch")
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.map(item -> OBJECT_MAPPER.readValue(item, Software.class));
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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org.apache.spark.sql.Dataset<Software> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(Software.class));
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org.apache.spark.sql.Dataset<Result> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(Result.class));
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Assertions.assertEquals(1, verificationDataset.count());
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Assertions.assertEquals(19, verificationDataset.count());
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Assertions
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.assertEquals(
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@ -178,10 +178,10 @@ public class SplitForCommunityTest {
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tmp = sc
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.textFile(workingDir.toString() + "/split/egi")
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.map(item -> OBJECT_MAPPER.readValue(item, Software.class));
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(Software.class));
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.createDataset(tmp.rdd(), Encoders.bean(Result.class));
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Assertions.assertEquals(1, verificationDataset.count());
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@ -191,12 +191,12 @@ public class SplitForCommunityTest {
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tmp = sc
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.textFile(workingDir.toString() + "/split/ni")
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.map(item -> OBJECT_MAPPER.readValue(item, Software.class));
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(Software.class));
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.createDataset(tmp.rdd(), Encoders.bean(Result.class));
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Assertions.assertEquals(1, verificationDataset.count());
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Assertions.assertEquals(5, verificationDataset.count());
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Assertions
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.assertEquals(
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@ -204,12 +204,12 @@ public class SplitForCommunityTest {
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tmp = sc
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.textFile(workingDir.toString() + "/split/science-innovation-policy")
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.map(item -> OBJECT_MAPPER.readValue(item, Software.class));
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(Software.class));
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.createDataset(tmp.rdd(), Encoders.bean(Result.class));
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Assertions.assertEquals(4, verificationDataset.count());
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Assertions.assertEquals(5, verificationDataset.count());
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Assertions
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.assertEquals(
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@ -224,5 +224,119 @@ public class SplitForCommunityTest {
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.assertEquals(
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1, verificationDataset.filter("id = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'").count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/fet-fp7")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/fet-h2020")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/clarin")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/rda")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/ee")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/fam")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/mes")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/instruct")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/elixir-gr")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/aginfra")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/dariah")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/risis")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/epos")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/beopen")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/euromarine")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/ifremer")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/oa-pg")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/covid-19")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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tmp = sc
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.textFile(workingDir.toString() + "/split/enermaps")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
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Assertions.assertEquals(0, tmp.count());
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}
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}
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@ -23,6 +23,7 @@ import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.schema.dump.oaf.Result;
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import eu.dnetlib.dhp.schema.dump.oaf.Software;
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public class UpdateProjectInfoTest {
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@ -75,20 +76,19 @@ public class UpdateProjectInfoTest {
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SparkUpdateProjectInfo.main(new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-resultTableName", "eu.dnetlib.dhp.schema.dump.oaf.Software",
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"-preparedInfoPath", sourcePath + "/preparedInfo",
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"-outputPath", workingDir.toString() + "/ext/software",
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"-sourcePath", sourcePath + "/software"
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"-outputPath", workingDir.toString() + "/result",
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"-sourcePath", sourcePath + "/software.json"
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Software> tmp = sc
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.textFile(workingDir.toString() + "/ext/software")
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.map(item -> OBJECT_MAPPER.readValue(item, Software.class));
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JavaRDD<Result> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, Result.class));
|
||||
|
||||
org.apache.spark.sql.Dataset<Software> verificationDataset = spark
|
||||
.createDataset(tmp.rdd(), Encoders.bean(Software.class));
|
||||
org.apache.spark.sql.Dataset<Result> verificationDataset = spark
|
||||
.createDataset(tmp.rdd(), Encoders.bean(Result.class));
|
||||
|
||||
verificationDataset.show(false);
|
||||
|
||||
|
|
|
|||
|
|
@ -3,14 +3,45 @@ package eu.dnetlib.dhp.oa.graph.dump;
|
|||
|
||||
import java.io.IOException;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
public class TestZenodoConnection {
|
||||
public class ZenodoUploadTest {
|
||||
|
||||
@Test
|
||||
public void test1() throws IOException {
|
||||
public void testConnection() throws IOException {
|
||||
APIClient s = new APIClient(
|
||||
"https://sandbox.zenodo.org/api/deposit/depositions?access_token=5ImUj0VC1ICg4ifK5dc3AGzJhcfAB4osxrFlsr8WxHXxjaYgCE0hY8HZcDoe");
|
||||
// "https://sandbox.zenodo.org/api/deposit/depositions?access_token=5ImUj0VC1ICg4ifK5dc3AGzJhcfAB4osxrFlsr8WxHXxjaYgCE0hY8HZcDoe");
|
||||
"https://sandbox.zenodo.org/api/deposit/depositions");
|
||||
|
||||
Assertions.assertEquals(201, s.connect());
|
||||
|
||||
final String sourcePath = getClass()
|
||||
.getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/ni")
|
||||
.getPath();
|
||||
|
||||
s.upload(sourcePath, "Neuroinformatics");
|
||||
|
||||
}
|
||||
//
|
||||
// @Test
|
||||
// public void testGet() throws IOException {
|
||||
// APIClient s = new APIClient("https://sandbox.zenodo.org/api/deposit/depositions");
|
||||
//
|
||||
// s.get();
|
||||
// }
|
||||
|
||||
@Test
|
||||
public void testUpload() throws IOException {
|
||||
|
||||
APIClient s = new APIClient("https://sandbox.zenodo.org/api/deposit/depositions?access_token=5ImUj0VC1ICg4ifK5dc3AGzJhcfAB4osxrFlsr8WxHXxjaYgCE0hY8HZcDoe");
|
||||
final String sourcePath = getClass()
|
||||
.getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/ni")
|
||||
.getPath();
|
||||
|
||||
s.upload(sourcePath, "Neuroinformatics");
|
||||
|
||||
|
||||
}
|
||||
}
|
||||
|
|
|
|||
Loading…
Reference in New Issue