forked from D-Net/dnet-hadoop
Improve performance and efficiency by rewriting the creation process of "publication", "project", "dataset", "datasource", "software", "otherresearchproduct" and "result" tables, to be performed in a single query, for each one.
This commit is contained in:
parent
fe2275a9b0
commit
54e11b6a43
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@ -4,108 +4,6 @@
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----------------------------------------------------------------
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----------------------------------------------------------------
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--Datasource temporary table updates
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UPDATE ${stats_db_name}.datasource_tmp
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SET harvested='true'
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WHERE datasource_tmp.id IN (SELECT DISTINCT d.id
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FROM ${stats_db_name}.datasource_tmp d,
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${stats_db_name}.result_datasources rd
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WHERE d.id = rd.datasource); -- /*EOS*/
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-- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
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UPDATE ${stats_db_name}.project_tmp
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SET haspubs='yes'
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WHERE project_tmp.id IN (SELECT pr.id
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FROM ${stats_db_name}.project_results pr,
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${stats_db_name}.result r
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WHERE pr.result = r.id
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AND r.type = 'publication'); -- /*EOS*/
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DROP TABLE IF EXISTS ${stats_db_name}.project purge; -- /*EOS*/
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CREATE TABLE ${stats_db_name}.project stored as parquet as
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SELECT p.id,
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p.acronym,
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p.title,
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p.funder,
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p.funding_lvl0,
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p.funding_lvl1,
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p.funding_lvl2,
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p.ec39,
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p.type,
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p.startdate,
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p.enddate,
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p.start_year,
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p.end_year,
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p.duration,
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CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs,
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CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs,
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CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
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CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
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p.callidentifier,
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p.code,
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p.totalcost,
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p.fundedamount,
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p.currency
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FROM ${stats_db_name}.project_tmp p
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LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
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FROM ${stats_db_name}.project_results pr
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INNER JOIN ${stats_db_name}.result r ON pr.result = r.id
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WHERE r.type = 'publication'
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GROUP BY pr.id) AS prr1 on prr1.id = p.id
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LEFT JOIN (SELECT pp.id,
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max(datediff(to_date(r.date), to_date(pp.enddate))) AS daysForlastPub,
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count(distinct r.id) AS dp
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FROM ${stats_db_name}.project_tmp pp,
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${stats_db_name}.project_results pr,
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${stats_db_name}.result r
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WHERE pp.id = pr.id
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AND pr.result = r.id
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AND r.type = 'publication'
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AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
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GROUP BY pp.id) AS prr2
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ON prr2.id = p.id; -- /*EOS*/
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UPDATE ${stats_db_name}.publication_tmp
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SET delayed = 'yes'
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WHERE publication_tmp.id IN (SELECT distinct r.id
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FROM ${stats_db_name}.result r,
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${stats_db_name}.project_results pr,
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${stats_db_name}.project_tmp p
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WHERE r.id = pr.result
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AND pr.id = p.id
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AND to_date(r.date) - to_date(p.enddate) > 0); -- /*EOS*/
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UPDATE ${stats_db_name}.dataset_tmp
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SET delayed = 'yes'
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WHERE dataset_tmp.id IN (SELECT distinct r.id
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FROM ${stats_db_name}.result r,
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${stats_db_name}.project_results pr,
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${stats_db_name}.project_tmp p
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WHERE r.id = pr.result
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AND pr.id = p.id
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AND to_date(r.date) - to_date(p.enddate) > 0); -- /*EOS*/
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UPDATE ${stats_db_name}.software_tmp
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SET delayed = 'yes'
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WHERE software_tmp.id IN (SELECT distinct r.id
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FROM ${stats_db_name}.result r,
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${stats_db_name}.project_results pr,
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${stats_db_name}.project_tmp p
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WHERE r.id = pr.result
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AND pr.id = p.id
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AND to_date(r.date) - to_date(p.enddate) > 0); -- /*EOS*/
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UPDATE ${stats_db_name}.otherresearchproduct_tmp
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SET delayed = 'yes'
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WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id
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FROM ${stats_db_name}.result r,
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${stats_db_name}.project_results pr,
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${stats_db_name}.project_tmp p
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WHERE r.id = pr.result
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AND pr.id = p.id
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AND to_date(r.date) - to_date(p.enddate) > 0); -- /*EOS*/
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CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS
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SELECT result_projects.id AS result,
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result_projects.project AS project_results,
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@ -1,42 +1,4 @@
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------------------------------------------------------------------------------------------------------
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-- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables
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------------------------------------------------------------------------------------------------------
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DROP TABLE IF EXISTS ${stats_db_name}.datasource purge; /*EOS*/
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CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS
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SELECT *
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FROM ${stats_db_name}.datasource_tmp; /*EOS*/
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DROP TABLE IF EXISTS ${stats_db_name}.publication purge; /*EOS*/
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CREATE TABLE ${stats_db_name}.publication stored AS parquet AS
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SELECT *
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FROM ${stats_db_name}.publication_tmp; /*EOS*/
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DROP TABLE IF EXISTS ${stats_db_name}.dataset purge; /*EOS*/
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CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS
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SELECT *
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FROM ${stats_db_name}.dataset_tmp; /*EOS*/
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DROP TABLE IF EXISTS ${stats_db_name}.software purge; /*EOS*/
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CREATE TABLE ${stats_db_name}.software stored AS parquet AS
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SELECT *
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FROM ${stats_db_name}.software_tmp; /*EOS*/
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DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct purge; /*EOS*/
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CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS
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SELECT *
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FROM ${stats_db_name}.otherresearchproduct_tmp; /*EOS*/
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DROP TABLE ${stats_db_name}.project_tmp; /*EOS*/
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DROP TABLE ${stats_db_name}.datasource_tmp; /*EOS*/
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DROP TABLE ${stats_db_name}.publication_tmp; /*EOS*/
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DROP TABLE ${stats_db_name}.dataset_tmp; /*EOS*/
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DROP TABLE ${stats_db_name}.software_tmp; /*EOS*/
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DROP TABLE ${stats_db_name}.otherresearchproduct_tmp; /*EOS*/
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set mapred.job.queue.name=analytics; /*EOS*/
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----------------------------------------------
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-- Re-creating views from final parquet tables
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@ -1,58 +1,26 @@
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set mapred.job.queue.name=analytics; /*EOS*/
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-- replace the creation of the result view to include the boolean fields from the previous tables (green, gold,
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-- replace the creation of the result view with a table, which will include the boolean fields from the previous tables (green, gold,
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-- peer reviewed)
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drop table if exists ${stats_db_name}.result_tmp; /*EOS*/
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CREATE TABLE ${stats_db_name}.result_tmp (
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id STRING,
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title STRING,
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publisher STRING,
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journal STRING,
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`date` STRING,
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`year` INT,
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bestlicence STRING,
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access_mode STRING,
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embargo_end_date STRING,
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delayed BOOLEAN,
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authors INT,
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source STRING,
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abstract BOOLEAN,
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type STRING ,
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peer_reviewed BOOLEAN,
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green BOOLEAN,
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gold BOOLEAN)
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clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true'); /*EOS*/
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.publication r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id; /*EOS*/
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.dataset r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id; /*EOS*/
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.software r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id; /*EOS*/
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.otherresearchproduct r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id; /*EOS*/
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drop table if exists ${stats_db_name}.result; /*EOS*/
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drop view if exists ${stats_db_name}.result; /*EOS*/
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create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp; /*EOS*/
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drop table ${stats_db_name}.result_tmp; /*EOS*/
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drop table if exists ${stats_db_name}.result; /*EOS*/
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CREATE TABLE ${stats_db_name}.result stored as parquet as
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SELECT /*+ COALESCE(100) */ r.id, r.title, r.publisher, r.journal, r.`date`, DATE_FORMAT(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM (
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(SELECT id, title, p.publisher, journal, `date`, DATE_FORMAT(`date`, 'yyyy'), bestlicence, bestlicence, embargo_end_date, delayed, authors, source, abstract, type
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FROM ${stats_db_name}.publication)
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UNION ALL
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(SELECT id, title, p.publisher, journal, `date`, DATE_FORMAT(`date`, 'yyyy'), bestlicence, bestlicence, embargo_end_date, delayed, authors, source, abstract, type
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FROM ${stats_db_name}.dataset)
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UNION ALL
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(select id, title, p.publisher, journal, `date`, DATE_FORMAT(`date`, 'yyyy'), bestlicence, bestlicence, embargo_end_date, delayed, authors, source, abstract, type
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FROM ${stats_db_name}.software)
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UNION ALL
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(select id, title, p.publisher, journal, `date`, DATE_FORMAT(`date`, 'yyyy'), bestlicence, bestlicence, embargo_end_date, delayed, authors, source, abstract, type
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FROM ${stats_db_name}.otherresearchproduct)
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) r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id; /*EOS*/
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--------------------------------------------------------------
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-- Publication temporary table
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DROP TABLE IF EXISTS ${stats_db_name}.publication_tmp purge; /*EOS*/
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CREATE TABLE ${stats_db_name}.publication_tmp
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(
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id STRING,
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title STRING,
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publisher STRING,
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journal STRING,
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date STRING,
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year STRING,
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bestlicence STRING,
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embargo_end_date STRING,
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delayed BOOLEAN,
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authors INT,
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source STRING,
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abstract BOOLEAN,
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type STRING
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)
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clustered by (id) into 100 buckets stored as orc tblproperties ('transactional' = 'true'); /*EOS*/
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DROP TABLE IF EXISTS ${stats_db_name}.publication purge; /*EOS*/
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INSERT INTO ${stats_db_name}.publication_tmp
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SELECT substr(p.id, 4) as id,
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p.title[0].value as title,
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p.publisher.value as publisher,
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p.journal.name as journal,
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p.dateofacceptance.value as date,
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date_format(p.dateofacceptance.value, 'yyyy') as year,
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p.bestaccessright.classname as bestlicence,
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p.embargoenddate.value as embargo_end_date,
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false as delayed,
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size(p.author) as authors,
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concat_ws('\u003B', p.source.value) as source,
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case when size(p.description) > 0 then true else false end as abstract,
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CREATE TABLE ${stats_db_name}.publication stored as parquet as
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with pub_pr as (
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select pub.id as pub_id, case when (to_date(pub.dateofacceptance.value) > to_date( pj.enddate.value)) then true else false end as delayed
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from ${openaire_db_name}.publication pub
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join ${openaire_db_name}.relation rel
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on reltype = 'resultProject' and relclass = 'isProducedBy' and rel.source=pub.id
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and rel.datainfo.deletedbyinference = false and rel.datainfo.invisible = false
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join ${openaire_db_name}.project pj on pj.id=rel.target and pj.datainfo.deletedbyinference = false and pj.datainfo.invisible = false
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where pub.datainfo.deletedbyinference = false and pub.datainfo.invisible = false
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),
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pub_delayed as (
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select pub_id, max(delayed) as delayed
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from pub_pr
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group by pub_id
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)
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select /*+ COALESCE(100) */
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substr(pub.id, 4) as id,
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pub.title[0].value as title,
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pub.publisher.value as publisher,
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pub.journal.name as journal,
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pub.dateofacceptance.value as date,
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date_format(pub.dateofacceptance.value, 'yyyy') as year,
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pub.bestaccessright.classname as bestlicence,
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pub.embargoenddate.value as embargo_end_date,
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coalesce(pub_delayed.delayed, false) as delayed, -- It's delayed, when the publication was published after the end of at least one of its projects.
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size(pub.author) as authors,
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concat_ws('\u003B', pub.source.value) as source,
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case when size(pub.description) > 0 then true else false end as abstract,
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'publication' as type
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from ${openaire_db_name}.publication p
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where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
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from ${openaire_db_name}.publication pub
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left outer join pub_delayed on pub.id=pub_delayed.pub_id
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where pub.datainfo.deletedbyinference = false and pub.datainfo.invisible = false; /*EOS*/
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DROP TABLE IF EXISTS ${stats_db_name}.publication_classifications purge; /*EOS*/
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------------------------------------------------------
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-- Dataset temporary table supporting updates
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DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp purge; /*EOS*/
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DROP TABLE IF EXISTS ${stats_db_name}.dataset purge; /*EOS*/
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CREATE TABLE ${stats_db_name}.dataset_tmp
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(
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id STRING,
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title STRING,
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publisher STRING,
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journal STRING,
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date STRING,
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year STRING,
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bestlicence STRING,
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embargo_end_date STRING,
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delayed BOOLEAN,
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authors INT,
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source STRING,
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abstract BOOLEAN,
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type STRING
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CREATE TABLE ${stats_db_name}.dataset stored as parquet as
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with datast_pr as (
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select datast.id as datast_id, case when (to_date(datast.dateofacceptance.value) > to_date( pj.enddate.value)) then true else false end as delayed
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from ${openaire_db_name}.dataset datast
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join ${openaire_db_name}.relation rel
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on reltype = 'resultProject' and relclass = 'isProducedBy' and rel.source=datast.id
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and rel.datainfo.deletedbyinference = false and rel.datainfo.invisible = false
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join ${openaire_db_name}.project pj on pj.id=rel.target and pj.datainfo.deletedbyinference = false and pj.datainfo.invisible = false
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where datast.datainfo.deletedbyinference = false and datast.datainfo.invisible = false
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),
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datast_delayed as (
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select datast_id, max(delayed) as delayed
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from datast_pr
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group by datast_id
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)
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clustered by (id) into 100 buckets stored AS orc tblproperties ('transactional' = 'true'); /*EOS*/
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select /*+ COALESCE(100) */
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substr(datast.id, 4) as id,
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datast.title[0].value as title,
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datast.publisher.value as publisher,
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cast(null as string) as journal,
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datast.dateofacceptance.value as date,
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date_format(datast.dateofacceptance.value, 'yyyy') as year,
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datast.bestaccessright.classname as bestlicence,
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datast.embargoenddate.value as embargo_end_date,
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coalesce(datast_delayed.delayed, false) as delayed, -- It's delayed, when the dataset was published after the end of the project.
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size(datast.author) as authors,
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concat_ws('\u003B', datast.source.value) as source,
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case when size(datast.description) > 0 then true else false end as abstract,
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'dataset' as type
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from ${openaire_db_name}.dataset datast
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left outer join datast_delayed on datast.id=datast_delayed.datast_id
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where datast.datainfo.deletedbyinference = false and datast.datainfo.invisible = false; /*EOS*/
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INSERT INTO ${stats_db_name}.dataset_tmp
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SELECT substr(d.id, 4) AS id,
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d.title[0].value AS title,
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d.publisher.value AS publisher,
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||||
cast(null AS string) AS journal,
|
||||
d.dateofacceptance.value as date,
|
||||
date_format(d.dateofacceptance.value, 'yyyy') AS year,
|
||||
d.bestaccessright.classname AS bestlicence,
|
||||
d.embargoenddate.value AS embargo_end_date,
|
||||
false AS delayed,
|
||||
size(d.author) AS authors,
|
||||
concat_ws('\u003B', d.source.value) AS source,
|
||||
CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract,
|
||||
'dataset' AS type
|
||||
FROM ${openaire_db_name}.dataset d
|
||||
WHERE d.datainfo.deletedbyinference = FALSE and d.datainfo.invisible=false; /*EOS*/
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.dataset_citations purge; /*EOS*/
|
||||
|
||||
|
|
|
|||
|
|
@ -5,41 +5,41 @@
|
|||
--------------------------------------------------------
|
||||
|
||||
-- Software temporary table supporting updates
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.software_tmp purge; /*EOS*/
|
||||
CREATE TABLE ${stats_db_name}.software_tmp
|
||||
(
|
||||
id STRING,
|
||||
title STRING,
|
||||
publisher STRING,
|
||||
journal STRING,
|
||||
date STRING,
|
||||
year STRING,
|
||||
bestlicence STRING,
|
||||
embargo_end_date STRING,
|
||||
delayed BOOLEAN,
|
||||
authors INT,
|
||||
source STRING,
|
||||
abstract BOOLEAN,
|
||||
type STRING
|
||||
)
|
||||
clustered by (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true'); /*EOS*/
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.software purge; /*EOS*/
|
||||
|
||||
INSERT INTO ${stats_db_name}.software_tmp
|
||||
SELECT substr(s.id, 4) as id,
|
||||
s.title[0].value AS title,
|
||||
s.publisher.value AS publisher,
|
||||
CAST(NULL AS string) AS journal,
|
||||
s.dateofacceptance.value AS DATE,
|
||||
date_format(s.dateofacceptance.value, 'yyyy') AS YEAR,
|
||||
s.bestaccessright.classname AS bestlicence,
|
||||
s.embargoenddate.value AS embargo_end_date,
|
||||
FALSE AS delayed,
|
||||
SIZE(s.author) AS authors,
|
||||
concat_ws('\u003B', s.source.value) AS source,
|
||||
CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
|
||||
CREATE TABLE ${stats_db_name}.software stored as parquet as
|
||||
with soft_pr as (
|
||||
select soft.id as soft_id, case when (to_date(soft.dateofacceptance.value) > to_date( pj.enddate.value)) then true else false end as delayed
|
||||
from ${openaire_db_name}.software soft
|
||||
join ${openaire_db_name}.relation rel
|
||||
on reltype = 'resultProject' and relclass = 'isProducedBy' and rel.source=soft.id
|
||||
and rel.datainfo.deletedbyinference = false and rel.datainfo.invisible = false
|
||||
join ${openaire_db_name}.project pj on pj.id=rel.target and pj.datainfo.deletedbyinference = false and pj.datainfo.invisible = false
|
||||
where soft.datainfo.deletedbyinference = false and soft.datainfo.invisible = false
|
||||
),
|
||||
soft_delayed as (
|
||||
select soft_id, max(delayed) as delayed
|
||||
from soft_pr
|
||||
group by soft_id
|
||||
)
|
||||
select /*+ COALESCE(100) */
|
||||
substr(soft.id, 4) as id,
|
||||
soft.title[0].value as title,
|
||||
soft.publisher.value as publisher,
|
||||
cast(null as string) as journal,
|
||||
soft.dateofacceptance.value as date,
|
||||
date_format(soft.dateofacceptance.value, 'yyyy') as year,
|
||||
soft.bestaccessright.classname as bestlicence,
|
||||
soft.embargoenddate.value as embargo_end_date,
|
||||
coalesce(soft_delayed.delayed, false) as delayed, -- It's delayed, when the software was published after the end of the project.
|
||||
size(soft.author) as authors,
|
||||
concat_ws('\u003B', soft.source.value) as source,
|
||||
case when size(soft.description) > 0 then true else false end as abstract,
|
||||
'software' as type
|
||||
from ${openaire_db_name}.software s
|
||||
where s.datainfo.deletedbyinference = false and s.datainfo.invisible=false; /*EOS*/
|
||||
from ${openaire_db_name}.software soft
|
||||
left outer join soft_delayed on soft.id=soft_delayed.soft_id
|
||||
where soft.datainfo.deletedbyinference = false and soft.datainfo.invisible = false; /*EOS*/
|
||||
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.software_citations purge; /*EOS*/
|
||||
|
||||
|
|
|
|||
|
|
@ -5,41 +5,41 @@
|
|||
--------------------------------------------------------------------------------
|
||||
|
||||
-- Otherresearchproduct temporary table supporting updates
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp purge; /*EOS*/
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct purge; /*EOS*/
|
||||
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp
|
||||
(
|
||||
id STRING,
|
||||
title STRING,
|
||||
publisher STRING,
|
||||
journal STRING,
|
||||
date STRING,
|
||||
year STRING,
|
||||
bestlicence STRING,
|
||||
embargo_end_date STRING,
|
||||
delayed BOOLEAN,
|
||||
authors INT,
|
||||
source STRING,
|
||||
abstract BOOLEAN,
|
||||
type STRING
|
||||
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true'); /*EOS*/
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct stored as parquet as
|
||||
with other_pr as (
|
||||
select other.id as other_id, case when (to_date(other.dateofacceptance.value) > to_date( pj.enddate.value)) then true else false end as delayed
|
||||
from ${openaire_db_name}.otherresearchproduct other
|
||||
join ${openaire_db_name}.relation rel
|
||||
on reltype = 'resultProject' and relclass = 'isProducedBy' and rel.source=other.id
|
||||
and rel.datainfo.deletedbyinference = false and rel.datainfo.invisible = false
|
||||
join ${openaire_db_name}.project pj on pj.id=rel.target and pj.datainfo.deletedbyinference = false and pj.datainfo.invisible = false
|
||||
where other.datainfo.deletedbyinference = false and other.datainfo.invisible = false
|
||||
),
|
||||
other_delayed as (
|
||||
select other_id, max(delayed) as delayed
|
||||
from other_pr
|
||||
group by other_id
|
||||
)
|
||||
select /*+ COALESCE(100) */
|
||||
substr(other.id, 4) as id,
|
||||
other.title[0].value as title,
|
||||
other.publisher.value as publisher,
|
||||
cast(null as string) as journal,
|
||||
other.dateofacceptance.value as date,
|
||||
date_format(other.dateofacceptance.value, 'yyyy') as year,
|
||||
other.bestaccessright.classname as bestlicence,
|
||||
other.embargoenddate.value as embargo_end_date,
|
||||
false as delayed,
|
||||
size(other.author) as authors,
|
||||
concat_ws('\u003B', other.source.value) as source,
|
||||
case when size(other.description) > 0 then true else false end as abstract,
|
||||
'other' as type
|
||||
from ${openaire_db_name}.otherresearchproduct other
|
||||
left outer join other_delayed on other.id=other_delayed.other_id
|
||||
where other.datainfo.deletedbyinference = false and other.datainfo.invisible = false; /*EOS*/
|
||||
|
||||
INSERT INTO ${stats_db_name}.otherresearchproduct_tmp
|
||||
SELECT substr(o.id, 4) AS id,
|
||||
o.title[0].value AS title,
|
||||
o.publisher.value AS publisher,
|
||||
CAST(NULL AS string) AS journal,
|
||||
o.dateofacceptance.value AS DATE,
|
||||
date_format(o.dateofacceptance.value, 'yyyy') AS year,
|
||||
o.bestaccessright.classname AS bestlicence,
|
||||
o.embargoenddate.value as embargo_end_date,
|
||||
FALSE AS delayed,
|
||||
SIZE(o.author) AS authors,
|
||||
concat_ws('\u003B', o.source.value) AS source,
|
||||
CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
|
||||
'other' AS type
|
||||
FROM ${openaire_db_name}.otherresearchproduct o
|
||||
WHERE o.datainfo.deletedbyinference = FALSE and o.datainfo.invisible=false; /*EOS*/
|
||||
|
||||
-- Otherresearchproduct_citations
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_citations purge; /*EOS*/
|
||||
|
|
|
|||
|
|
@ -34,61 +34,69 @@ from ${openaire_db_name}.project p
|
|||
lateral view explode(p.h2020classification) classifs as class
|
||||
where p.datainfo.deletedbyinference=false and p.datainfo.invisible=false and class.h2020programme is not null; /*EOS*/
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.project_tmp purge; /*EOS*/
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.project purge; /*EOS*/
|
||||
|
||||
CREATE TABLE ${stats_db_name}.project_tmp
|
||||
(
|
||||
id STRING,
|
||||
acronym STRING,
|
||||
title STRING,
|
||||
funder STRING,
|
||||
funding_lvl0 STRING,
|
||||
funding_lvl1 STRING,
|
||||
funding_lvl2 STRING,
|
||||
ec39 STRING,
|
||||
type STRING,
|
||||
startdate STRING,
|
||||
enddate STRING,
|
||||
start_year INT,
|
||||
end_year INT,
|
||||
duration INT,
|
||||
haspubs STRING,
|
||||
numpubs INT,
|
||||
daysforlastpub INT,
|
||||
delayedpubs INT,
|
||||
callidentifier STRING,
|
||||
code STRING,
|
||||
totalcost FLOAT,
|
||||
fundedamount FLOAT,
|
||||
currency STRING
|
||||
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true'); /*EOS*/
|
||||
CREATE TABLE ${stats_db_name}.project stored as parquet as
|
||||
with pr_pub as (
|
||||
select pr.id as pr_id, pub.id as pub_id,
|
||||
(case when datediff(pub.dt_dateofacceptance, pr.dt_enddate) > 0 then true else false end) as delayed,
|
||||
max(datediff(pub.dt_dateofacceptance, pr.dt_enddate)) as daysForlastPub
|
||||
from (select id, to_date(dateofacceptance.value) as dt_dateofacceptance from ${openaire_db_name}.publication
|
||||
where datainfo.deletedbyinference = false and datainfo.invisible = false) pub
|
||||
join ${openaire_db_name}.relation rel
|
||||
on rel.reltype = 'resultProject' and rel.relclass = 'isProducedBy' and rel.source=pub.id
|
||||
and rel.datainfo.deletedbyinference = false and rel.datainfo.invisible = false
|
||||
join (select id, to_date(enddate.value) as dt_enddate from ${openaire_db_name}.project
|
||||
where datainfo.deletedbyinference = false and datainfo.invisible = false) pr
|
||||
on pr.id=rel.target
|
||||
group by pr.id, pub.id, pub.dt_dateofacceptance, pr.dt_enddate
|
||||
),
|
||||
num_pubs_pr as (
|
||||
select pr_id, count( distinct pub_id) as num_pubs
|
||||
from pr_pub
|
||||
group by pr_id
|
||||
),
|
||||
pub_delayed as (
|
||||
select pr_id, pub_id, max(delayed) as delayed
|
||||
from pr_pub
|
||||
group by pr_id, pub_id
|
||||
),
|
||||
num_pub_delayed as (
|
||||
select pr_id, count(distinct pub_id) as num_delayed
|
||||
from pub_delayed
|
||||
where delayed
|
||||
group by pr_id
|
||||
)
|
||||
select /*+ COALESCE(100) */
|
||||
substr(p.id, 4) as id,
|
||||
p.acronym.value as acronym,
|
||||
p.title.value as title,
|
||||
xpath_string(p.fundingtree[0].value, '//funder/name') as funder,
|
||||
xpath_string(p.fundingtree[0].value, '//funding_level_0/name') as funding_lvl0,
|
||||
xpath_string(p.fundingtree[0].value, '//funding_level_1/name') as funding_lvl1,
|
||||
xpath_string(p.fundingtree[0].value, '//funding_level_2/name') as funding_lvl2,
|
||||
p.ecsc39.value as ec39,
|
||||
p.contracttype.classname as type,
|
||||
p.startdate.value as startdate,
|
||||
p.enddate.value as enddate,
|
||||
year(p.startdate.value) as start_year,
|
||||
year(p.enddate.value) as end_year,
|
||||
cast(months_between(p.enddate.value, p.startdate.value) as int) as duration,
|
||||
case when pr_pub.pub_id is null then 'no' else 'yes' end as haspubs,
|
||||
num_pubs_pr.num_pubs as numpubs,
|
||||
pr_pub.daysForlastPub as daysForlastPub,
|
||||
npd.num_delayed as delayedpubs,
|
||||
p.callidentifier.value as callidentifier,
|
||||
p.code.value as code,
|
||||
p.totalcost as totalcost,
|
||||
p.fundedamount as fundedamount,
|
||||
p.currency.value as currency
|
||||
from ${openaire_db_name}.project p
|
||||
left outer join pr_pub on pr_pub.pr_id = p.id
|
||||
left outer join num_pubs_pr on num_pubs_pr.pr_id = p.id
|
||||
left outer join num_pub_delayed npd on npd.pr_id=p.id
|
||||
where p.datainfo.deletedbyinference = false and p.datainfo.invisible = false; /*EOS*/
|
||||
|
||||
INSERT INTO ${stats_db_name}.project_tmp
|
||||
SELECT substr(p.id, 4) AS id,
|
||||
p.acronym.value AS acronym,
|
||||
p.title.value AS title,
|
||||
xpath_string(p.fundingtree[0].value, '//funder/name') AS funder,
|
||||
xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0,
|
||||
xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1,
|
||||
xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2,
|
||||
p.ecsc39.value AS ec39,
|
||||
p.contracttype.classname AS type,
|
||||
p.startdate.value AS startdate,
|
||||
p.enddate.value AS enddate,
|
||||
year(p.startdate.value) AS start_year,
|
||||
year(p.enddate.value) AS end_year,
|
||||
CAST(MONTHS_BETWEEN(p.enddate.value, p.startdate.value) AS INT) AS duration,
|
||||
'no' AS haspubs,
|
||||
0 AS numpubs,
|
||||
0 AS daysforlastpub,
|
||||
0 AS delayedpubs,
|
||||
p.callidentifier.value AS callidentifier,
|
||||
p.code.value AS code,
|
||||
p.totalcost AS totalcost,
|
||||
p.fundedamount AS fundedamount,
|
||||
p.currency.value AS currency
|
||||
FROM ${openaire_db_name}.project p
|
||||
WHERE p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.funder purge; /*EOS*/
|
||||
|
||||
|
|
|
|||
|
|
@ -7,16 +7,16 @@
|
|||
-- Views on temporary tables that should be re-created in the end
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result as
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.publication_tmp
|
||||
FROM ${stats_db_name}.publication
|
||||
UNION ALL
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.software_tmp
|
||||
FROM ${stats_db_name}.software
|
||||
UNION ALL
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.dataset_tmp
|
||||
FROM ${stats_db_name}.dataset
|
||||
UNION ALL
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.otherresearchproduct_tmp; /*EOS*/
|
||||
FROM ${stats_db_name}.otherresearchproduct; /*EOS*/
|
||||
|
||||
-- Views on final tables
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS
|
||||
|
|
@ -153,4 +153,4 @@ CREATE TABLE ${stats_db_name}.result_projects STORED AS PARQUET AS
|
|||
select /*+ COALESCE(100) */ pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend, pr.provenance as provenance
|
||||
FROM ${stats_db_name}.result r
|
||||
JOIN ${stats_db_name}.project_results pr ON r.id = pr.result
|
||||
JOIN ${stats_db_name}.project_tmp p ON p.id = pr.id; /*EOS*/
|
||||
JOIN ${stats_db_name}.project p ON p.id = pr.id; /*EOS*/
|
||||
|
|
|
|||
|
|
@ -5,81 +5,36 @@
|
|||
-- Datasource table/view and Datasource related tables/views
|
||||
------------------------------------------------------------
|
||||
------------------------------------------------------------
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp purge; -- /*EOS*/
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.datasource purge; /*EOS*/
|
||||
|
||||
CREATE TABLE ${stats_db_name}.datasource_tmp
|
||||
(
|
||||
`id` string,
|
||||
`name` STRING,
|
||||
`type` STRING,
|
||||
`dateofvalidation` STRING,
|
||||
`yearofvalidation` string,
|
||||
`harvested` BOOLEAN,
|
||||
`piwik_id` INT,
|
||||
`latitude` STRING,
|
||||
`longitude` STRING,
|
||||
`websiteurl` STRING,
|
||||
`compatibility` STRING,
|
||||
issn_printed STRING,
|
||||
issn_online STRING
|
||||
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true'); -- /*EOS*/
|
||||
CREATE TABLE ${stats_db_name}.datasource stored as parquet as
|
||||
with piwik_datasource as (
|
||||
select id, split(originalidd, '\\:')[1] as piwik_id
|
||||
from ${openaire_db_name}.datasource
|
||||
lateral view explode(originalid) temp as originalidd
|
||||
where originalidd like "piwik:%"
|
||||
)
|
||||
select /*+ COALESCE(100) */
|
||||
substr(dtrce.id, 4) as id,
|
||||
case when dtrce.officialname.value='Unknown Repository' then 'Other' else dtrce.officialname.value end as name,
|
||||
dtrce.datasourcetype.classname as type,
|
||||
dtrce.dateofvalidation.value as dateofvalidation,
|
||||
case when dtrce.dateofvalidation.value='-1' then null else date_format(dtrce.dateofvalidation.value, 'yyyy') end as yearofvalidation,
|
||||
case when res.d_id is null then false else true end as harvested,
|
||||
case when piwik_d.piwik_id is null then 0 else piwik_d.piwik_id end as piwik_id,
|
||||
dtrce.latitude.value as latitude,
|
||||
dtrce.longitude.value as longitude,
|
||||
dtrce.websiteurl.value as websiteurl,
|
||||
dtrce.openairecompatibility.classid as compatibility,
|
||||
dtrce.journal.issnprinted as issn_printed,
|
||||
dtrce.journal.issnonline as issn_online
|
||||
from ${openaire_db_name}.datasource dtrce
|
||||
left outer join (select inst.hostedby.key as d_id from ${openaire_db_name}.result lateral view outer explode (instance) insts as inst) res on res.d_id=dtrce.id
|
||||
left outer join piwik_datasource piwik_d on piwik_d.id=dtrce.id
|
||||
where dtrce.datainfo.deletedbyinference = false and dtrce.datainfo.invisible = false; /*EOS*/
|
||||
|
||||
-- Insert statement that takes into account the piwik_id of the openAIRE graph
|
||||
INSERT INTO ${stats_db_name}.datasource_tmp
|
||||
SELECT substr(d1.id, 4) AS id,
|
||||
officialname.value AS name,
|
||||
datasourcetype.classname AS type,
|
||||
dateofvalidation.value AS dateofvalidation,
|
||||
date_format(d1.dateofvalidation.value, 'yyyy') AS yearofvalidation,
|
||||
FALSE AS harvested,
|
||||
CASE WHEN d2.piwik_id IS NULL THEN 0 ELSE d2.piwik_id END AS piwik_id,
|
||||
d1.latitude.value AS latitude,
|
||||
d1.longitude.value AS longitude,
|
||||
d1.websiteurl.value AS websiteurl,
|
||||
d1.openairecompatibility.classid AS compatibility,
|
||||
d1.journal.issnprinted AS issn_printed,
|
||||
d1.journal.issnonline AS issn_online
|
||||
FROM ${openaire_db_name}.datasource d1
|
||||
LEFT OUTER JOIN
|
||||
(SELECT id, split(originalidd, '\\:')[1] as piwik_id
|
||||
FROM ${openaire_db_name}.datasource
|
||||
LATERAL VIEW EXPLODE(originalid) temp AS originalidd
|
||||
WHERE originalidd like "piwik:%") AS d2
|
||||
ON d1.id = d2.id
|
||||
WHERE d1.datainfo.deletedbyinference = FALSE and d1.datainfo.invisible=false; -- /*EOS*/
|
||||
|
||||
-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table.
|
||||
-- Creating a temporary dual table that will be removed after the following insert
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.dual purge; -- /*EOS*/
|
||||
|
||||
CREATE TABLE ${stats_db_name}.dual ( dummy CHAR(1)); -- /*EOS*/
|
||||
|
||||
INSERT INTO ${stats_db_name}.dual VALUES ('X'); -- /*EOS*/
|
||||
|
||||
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`,
|
||||
`piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`, `issn_printed`, `issn_online`)
|
||||
SELECT 'other',
|
||||
'Other',
|
||||
'Repository',
|
||||
NULL,
|
||||
NULL,
|
||||
false,
|
||||
0,
|
||||
NULL,
|
||||
NULL,
|
||||
NULL,
|
||||
'unknown',
|
||||
null,
|
||||
null
|
||||
FROM ${stats_db_name}.dual
|
||||
WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name = 'Unknown Repository'); -- /*EOS*/
|
||||
DROP TABLE ${stats_db_name}.dual; -- /*EOS*/
|
||||
|
||||
UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name = 'Unknown Repository'; -- /*EOS*/
|
||||
UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation = '-1'; -- /*EOS*/
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages purge; -- /*EOS*/
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages purge; /*EOS*/
|
||||
|
||||
CREATE TABLE ${stats_db_name}.datasource_languages STORED AS PARQUET AS
|
||||
SELECT substr(d.id, 4) AS id, langs.languages AS language
|
||||
|
|
|
|||
Loading…
Reference in New Issue