forked from D-Net/dnet-hadoop
test unit for result to project propagation
This commit is contained in:
parent
8f12292daa
commit
4b01dc60e6
|
|
@ -0,0 +1,194 @@
|
|||
package eu.dnetlib.dhp.projecttoresult;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import eu.dnetlib.dhp.countrypropagation.CountryPropagationJobTest;
|
||||
import eu.dnetlib.dhp.countrypropagation.SparkCountryPropagationJob2;
|
||||
import eu.dnetlib.dhp.schema.oaf.Country;
|
||||
import eu.dnetlib.dhp.schema.oaf.Relation;
|
||||
import eu.dnetlib.dhp.schema.oaf.Software;
|
||||
import org.apache.commons.io.FileUtils;
|
||||
import org.apache.neethi.Assertion;
|
||||
import org.apache.spark.SparkConf;
|
||||
import org.apache.spark.api.java.JavaRDD;
|
||||
import org.apache.spark.api.java.JavaSparkContext;
|
||||
import org.apache.spark.sql.Dataset;
|
||||
import org.apache.spark.sql.Encoders;
|
||||
import org.apache.spark.sql.SparkSession;
|
||||
import org.junit.jupiter.api.AfterAll;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.BeforeAll;
|
||||
import org.junit.jupiter.api.Test;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import scala.Tuple2;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.nio.file.Files;
|
||||
import java.nio.file.Path;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
public class ProjectPropagationJobTest {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(ProjectPropagationJobTest.class);
|
||||
|
||||
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
|
||||
|
||||
private static final ClassLoader cl = ProjectPropagationJobTest.class.getClassLoader();
|
||||
|
||||
private static SparkSession spark;
|
||||
|
||||
private static Path workingDir;
|
||||
|
||||
|
||||
@BeforeAll
|
||||
public static void beforeAll() throws IOException {
|
||||
workingDir = Files.createTempDirectory(ProjectPropagationJobTest.class.getSimpleName());
|
||||
log.info("using work dir {}", workingDir);
|
||||
|
||||
SparkConf conf = new SparkConf();
|
||||
conf.setAppName(ProjectPropagationJobTest.class.getSimpleName());
|
||||
|
||||
conf.setMaster("local[*]");
|
||||
conf.set("spark.driver.host", "localhost");
|
||||
conf.set("hive.metastore.local", "true");
|
||||
conf.set("spark.ui.enabled", "false");
|
||||
conf.set("spark.sql.warehouse.dir", workingDir.toString());
|
||||
conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
|
||||
|
||||
|
||||
spark = SparkSession
|
||||
.builder()
|
||||
.appName(ProjectPropagationJobTest.class.getSimpleName())
|
||||
.config(conf)
|
||||
.getOrCreate();
|
||||
|
||||
}
|
||||
|
||||
@AfterAll
|
||||
public static void afterAll() throws IOException {
|
||||
FileUtils.deleteDirectory(workingDir.toFile());
|
||||
spark.stop();
|
||||
}
|
||||
|
||||
/**
|
||||
* There are no new relations to be added. All the possible relations have already been linked with the project in the graph
|
||||
* @throws Exception
|
||||
*/
|
||||
@Test
|
||||
public void NoUpdateTest() throws Exception {
|
||||
|
||||
SparkResultToProjectThroughSemRelJob3.main(new String[]{
|
||||
"-isTest", Boolean.TRUE.toString(),
|
||||
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
||||
"-sourcePath", getClass().getResource("/eu/dnetlib/dhp/projecttoresult/sample/relation").getPath(),
|
||||
"-hive_metastore_uris", "",
|
||||
"-writeUpdate", "false",
|
||||
"-saveGraph", "true",
|
||||
"-outputPath", workingDir.toString() + "/relation",
|
||||
"-potentialUpdatePath", getClass().getResource("/eu/dnetlib/dhp/projecttoresult/preparedInfo/noupdates/potentialUpdates").getPath(),
|
||||
"-alreadyLinkedPath",getClass().getResource("/eu/dnetlib/dhp/projecttoresult/preparedInfo/alreadyLinked").getPath(),
|
||||
});
|
||||
|
||||
final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
|
||||
|
||||
JavaRDD<Relation> tmp = sc.textFile(workingDir.toString()+"/relation")
|
||||
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
|
||||
|
||||
Assertions.assertEquals(0, tmp.count());
|
||||
|
||||
|
||||
}
|
||||
|
||||
/**
|
||||
* All the possible updates will produce a new relation. No relations are already linked in the grpha
|
||||
* @throws Exception
|
||||
*/
|
||||
@Test
|
||||
public void UpdateTenTest() throws Exception{
|
||||
SparkResultToProjectThroughSemRelJob3.main(new String[]{
|
||||
"-isTest", Boolean.TRUE.toString(),
|
||||
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
||||
"-sourcePath", getClass().getResource("/eu/dnetlib/dhp/projecttoresult/sample/relation").getPath(),
|
||||
"-hive_metastore_uris", "",
|
||||
"-writeUpdate", "false",
|
||||
"-saveGraph", "true",
|
||||
"-outputPath", workingDir.toString() + "/relation",
|
||||
"-potentialUpdatePath", getClass().getResource("/eu/dnetlib/dhp/projecttoresult/preparedInfo/tenupdates/potentialUpdates").getPath(),
|
||||
"-alreadyLinkedPath",getClass().getResource("/eu/dnetlib/dhp/projecttoresult/preparedInfo/alreadyLinked").getPath(),
|
||||
});
|
||||
|
||||
final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
|
||||
|
||||
JavaRDD<Relation> tmp = sc.textFile(workingDir.toString()+"/relation")
|
||||
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
|
||||
|
||||
//got 20 new relations because "produces" and "isProducedBy" are added
|
||||
Assertions.assertEquals(20, tmp.count());
|
||||
|
||||
Dataset<Relation> verificationDs = spark.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
|
||||
|
||||
Assertions.assertEquals(10, verificationDs.filter("relClass = 'produces'").count());
|
||||
Assertions.assertEquals(10, verificationDs.filter("relClass = 'isProducedBy'").count());
|
||||
|
||||
Assertions.assertEquals(10, verificationDs.filter(r -> r.getSource().substring(0, 2). equals("50") &&
|
||||
r.getTarget().substring(0,2).equals("40") &&
|
||||
r.getRelClass().equals("isProducedBy")).count());
|
||||
Assertions.assertEquals(10, verificationDs.filter(r -> r.getSource().substring(0, 2). equals("40") &&
|
||||
r.getTarget().substring(0,2).equals("50") &&
|
||||
r.getRelClass().equals("produces")).count());
|
||||
|
||||
verificationDs.createOrReplaceTempView("temporary");
|
||||
|
||||
Assertions.assertEquals(20, spark.sql("Select * from temporary where datainfo.inferenceprovenance = 'propagation'").count());
|
||||
}
|
||||
|
||||
/**
|
||||
* One of the relations in the possible updates is already linked to the project in the graph.
|
||||
* All the others are not. There will be 9 new associations leading to 18 new relations
|
||||
* @throws Exception
|
||||
*/
|
||||
@Test
|
||||
public void UpdateMixTest() throws Exception{
|
||||
SparkResultToProjectThroughSemRelJob3.main(new String[]{
|
||||
"-isTest", Boolean.TRUE.toString(),
|
||||
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
||||
"-sourcePath", getClass().getResource("/eu/dnetlib/dhp/projecttoresult/sample/relation").getPath(),
|
||||
"-hive_metastore_uris", "",
|
||||
"-writeUpdate", "false",
|
||||
"-saveGraph", "true",
|
||||
"-outputPath", workingDir.toString() + "/relation",
|
||||
"-potentialUpdatePath", getClass().getResource("/eu/dnetlib/dhp/projecttoresult/preparedInfo/updatesmixed/potentialUpdates").getPath(),
|
||||
"-alreadyLinkedPath",getClass().getResource("/eu/dnetlib/dhp/projecttoresult/preparedInfo/alreadyLinked").getPath(),
|
||||
});
|
||||
|
||||
final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
|
||||
|
||||
JavaRDD<Relation> tmp = sc.textFile(workingDir.toString()+"/relation")
|
||||
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
|
||||
|
||||
// JavaRDD<Relation> tmp = sc.textFile("/tmp/relation")
|
||||
// .map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
|
||||
|
||||
|
||||
//got 20 new relations because "produces" and "isProducedBy" are added
|
||||
Assertions.assertEquals(18, tmp.count());
|
||||
|
||||
Dataset<Relation> verificationDs = spark.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
|
||||
|
||||
Assertions.assertEquals(9, verificationDs.filter("relClass = 'produces'").count());
|
||||
Assertions.assertEquals(9, verificationDs.filter("relClass = 'isProducedBy'").count());
|
||||
|
||||
Assertions.assertEquals(9, verificationDs.filter(r -> r.getSource().substring(0, 2). equals("50") &&
|
||||
r.getTarget().substring(0,2).equals("40") &&
|
||||
r.getRelClass().equals("isProducedBy")).count());
|
||||
Assertions.assertEquals(9, verificationDs.filter(r -> r.getSource().substring(0, 2). equals("40") &&
|
||||
r.getTarget().substring(0,2).equals("50") &&
|
||||
r.getRelClass().equals("produces")).count());
|
||||
|
||||
verificationDs.createOrReplaceTempView("temporary");
|
||||
|
||||
Assertions.assertEquals(18, spark.sql("Select * from temporary where datainfo.inferenceprovenance = 'propagation'").count());
|
||||
|
||||
}
|
||||
}
|
||||
Binary file not shown.
Loading…
Reference in New Issue