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changed the parameter from production to baseURL. Fixed issue in tagging configuration

This commit is contained in:
Miriam Baglioni 2023-11-27 15:10:27 +01:00
parent eaf0a702de
commit 48e0427a23
7 changed files with 112 additions and 111 deletions
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10
dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/api/QueryCommunityAPI.java
View File

@ -34,32 +34,32 @@ public class QueryCommunityAPI {
public static String communities(String baseURL) throws IOException { public static String communities(String baseURL) throws IOException {
return get(baseURL + "community/communities"); return get(baseURL + "communities");
} }
public static String community(String id, String baseURL ) throws IOException { public static String community(String id, String baseURL ) throws IOException {
return get(baseURL + "community/" + id); return get(baseURL + id);
} }
public static String communityDatasource(String id, String baseURL ) throws IOException { public static String communityDatasource(String id, String baseURL ) throws IOException {
return get(baseURL + "community/" + id + "/contentproviders"); return get(baseURL + id + "/contentproviders");
} }
public static String communityPropagationOrganization(String id, String baseURL ) throws IOException { public static String communityPropagationOrganization(String id, String baseURL ) throws IOException {
return get(baseURL + "community/" + id + "/propagationOrganizations"); return get(baseURL + id + "/propagationOrganizations");
} }
public static String communityProjects(String id, String page, String size, String baseURL ) throws IOException { public static String communityProjects(String id, String page, String size, String baseURL ) throws IOException {
return get(baseURL + "community/" + id + "/projects/" + page + "/" + size); return get(baseURL + id + "/projects/" + page + "/" + size);
} }

1
dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/SparkBulkTagJob.java
View File

@ -80,6 +80,7 @@ public class SparkBulkTagJob {
cc = CommunityConfigurationFactory.newInstance(taggingConf); cc = CommunityConfigurationFactory.newInstance(taggingConf);
} else { } else {
cc = Utils.getCommunityConfiguration(baseURL); cc = Utils.getCommunityConfiguration(baseURL);
log.info(OBJECT_MAPPER.writeValueAsString(cc));
} }
runWithSparkSession( runWithSparkSession(

8
dhp-workflows/dhp-enrichment/src/main/resources/eu/dnetlib/dhp/bulktag/input_bulkTag_parameters.json
View File

@ -34,10 +34,10 @@
}, },
{ {
"paramName": "p", "paramName": "bu",
"paramLongName": "production", "paramLongName": "baseURL",
"paramDescription": "this parameter is intended for testing purposes only. It is a possible tagging configuration obtained via the XQUERY. Intended to be removed", "paramDescription": "this parameter is to specify the api to be queried (beta or production)",
"paramRequired": true "paramRequired": false
} }
] ]

8
dhp-workflows/dhp-enrichment/src/main/resources/eu/dnetlib/dhp/resulttocommunityfromorganization/input_preparecommunitytoresult_parameters.json
View File

@ -24,10 +24,10 @@
"paramRequired": true "paramRequired": true
}, },
{ {
"paramName": "p", "paramName": "bu",
"paramLongName": "production", "paramLongName": "baseURL",
"paramDescription": "the path used to store temporary output files", "paramDescription": "the base URL to the community API to use",
"paramRequired": true "paramRequired": false
} }
] ]

6
dhp-workflows/dhp-enrichment/src/main/resources/eu/dnetlib/dhp/resulttocommunityfromproject/input_preparecommunitytoresult_parameters.json
View File

@ -19,10 +19,10 @@
"paramRequired": true "paramRequired": true
}, },
{ {
"paramName": "p", "paramName": "bu",
"paramLongName": "production", "paramLongName": "baseURL",
"paramDescription": "the path used to store temporary output files", "paramDescription": "the path used to store temporary output files",
"paramRequired": true "paramRequired": false
} }
] ]

8
dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java
View File

@ -533,6 +533,7 @@ public class BulkTagJobTest {
+ "where MyD.inferenceprovenance = 'bulktagging'"; + "where MyD.inferenceprovenance = 'bulktagging'";
org.apache.spark.sql.Dataset<Row> idExplodeCommunity = spark.sql(query); org.apache.spark.sql.Dataset<Row> idExplodeCommunity = spark.sql(query);
Assertions.assertEquals(7, idExplodeCommunity.count()); Assertions.assertEquals(7, idExplodeCommunity.count());
Assertions Assertions
@ -1572,11 +1573,10 @@ public class BulkTagJobTest {
"-isSparkSessionManaged", Boolean.FALSE.toString(), "-isSparkSessionManaged", Boolean.FALSE.toString(),
"-sourcePath", "-sourcePath",
getClass().getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/no_updates/").getPath(), getClass().getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/no_updates/").getPath(),
"-taggingConf", taggingConf,
"-outputPath", workingDir.toString() + "/", "-outputPath", workingDir.toString() + "/",
"-production", Boolean.TRUE.toString(), // "-baseURL", "https://services.openaire.eu/openaire/community/",
"-pathMap", pathMap "-pathMap", pathMap,
"-taggingConf", taggingConf
}); });
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());

182
dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/bulktag/communityconfiguration/tagging_conf_remove.xml
View File

@ -26,7 +26,7 @@
<subjects/> <subjects/>
<datasources> <datasources>
<datasource> <datasource>
<openaireId>re3data_____::a507cdacc5bbcc08761c92185dee5cab</openaireId> <openaireId>10|re3data_____::a507cdacc5bbcc08761c92185dee5cab</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
</datasources> </datasources>
@ -140,39 +140,39 @@
</subjects> </subjects>
<datasources> <datasources>
<datasource> <datasource>
<openaireId>re3data_____::9ebe127e5f3a0bf401875690f3bb6b81</openaireId> <openaireId>10|re3data_____::9ebe127e5f3a0bf401875690f3bb6b81</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::c6cd4b532e12868c1d760a8d7cda6815</openaireId> <openaireId>10|doajarticles::c6cd4b532e12868c1d760a8d7cda6815</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::a6de4499bb87bf3c01add0a9e2c9ed0b</openaireId> <openaireId>10|doajarticles::a6de4499bb87bf3c01add0a9e2c9ed0b</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::6eb31d13b12bc06bbac06aef63cf33c9</openaireId> <openaireId>10|doajarticles::6eb31d13b12bc06bbac06aef63cf33c9</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::0da84e9dfdc8419576169e027baa8028</openaireId> <openaireId>10|doajarticles::0da84e9dfdc8419576169e027baa8028</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>re3data_____::84e123776089ce3c7a33db98d9cd15a8</openaireId> <openaireId>10|re3data_____::84e123776089ce3c7a33db98d9cd15a8</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>openaire____::c5502a43e76feab55dd00cf50f519125</openaireId> <openaireId>10|openaire____::c5502a43e76feab55dd00cf50f519125</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>re3data_____::a48f09c562b247a9919acfe195549b47</openaireId> <openaireId>10|re3data_____::a48f09c562b247a9919acfe195549b47</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>opendoar____::97275a23ca44226c9964043c8462be96</openaireId> <openaireId>10|opendoar____::97275a23ca44226c9964043c8462be96</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
</datasources> </datasources>
@ -287,55 +287,55 @@
</subjects> </subjects>
<datasources> <datasources>
<datasource> <datasource>
<openaireId>doajarticles::8cec81178926caaca531afbd8eb5d64c</openaireId> <openaireId>10|doajarticles::8cec81178926caaca531afbd8eb5d64c</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::0f7a7f30b5400615cae1829f3e743982</openaireId> <openaireId>10|doajarticles::0f7a7f30b5400615cae1829f3e743982</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::9740f7f5af3e506d2ad2c215cdccd51a</openaireId> <openaireId>10|doajarticles::9740f7f5af3e506d2ad2c215cdccd51a</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::9f3fbaae044fa33cb7069b72935a3254</openaireId> <openaireId>10|doajarticles::9f3fbaae044fa33cb7069b72935a3254</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::cb67f33eb9819f5c624ce0313957f6b3</openaireId> <openaireId>10|doajarticles::cb67f33eb9819f5c624ce0313957f6b3</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::e21c97cbb7a209afc75703681c462906</openaireId> <openaireId>10|doajarticles::e21c97cbb7a209afc75703681c462906</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::554cde3be9e5c4588b4c4f9f503120cb</openaireId> <openaireId>10|doajarticles::554cde3be9e5c4588b4c4f9f503120cb</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>tubitakulakb::11e22f49e65b9fd11d5b144b93861a1b</openaireId> <openaireId>10|tubitakulakb::11e22f49e65b9fd11d5b144b93861a1b</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::57c5d3837da943e93b28ec4db82ec7a5</openaireId> <openaireId>10|doajarticles::57c5d3837da943e93b28ec4db82ec7a5</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::a186f5ddb8e8c7ecc992ef51cf3315b1</openaireId> <openaireId>10|doajarticles::a186f5ddb8e8c7ecc992ef51cf3315b1</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::e21c97cbb7a209afc75703681c462906</openaireId> <openaireId>10|doajarticles::e21c97cbb7a209afc75703681c462906</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::dca64612dfe0963fffc119098a319957</openaireId> <openaireId>10|doajarticles::dca64612dfe0963fffc119098a319957</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::dd70e44479f0ade25aa106aef3e87a0a</openaireId> <openaireId>10|doajarticles::dd70e44479f0ade25aa106aef3e87a0a</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
</datasources> </datasources>
@ -406,27 +406,27 @@
</subjects> </subjects>
<datasources> <datasources>
<datasource> <datasource>
<openaireId>re3data_____::5b9bf9171d92df854cf3c520692e9122</openaireId> <openaireId>10|re3data_____::5b9bf9171d92df854cf3c520692e9122</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::c7d3de67dc77af72f6747157441252ec</openaireId> <openaireId>10|doajarticles::c7d3de67dc77af72f6747157441252ec</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>re3data_____::8515794670370f49c1d176c399c714f5</openaireId> <openaireId>10|re3data_____::8515794670370f49c1d176c399c714f5</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::d640648c84b10d425f96f11c3de468f3</openaireId> <openaireId>10|doajarticles::d640648c84b10d425f96f11c3de468f3</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::0c0e74daa5d95504eade9c81ebbd5b8a</openaireId> <openaireId>10|doajarticles::0c0e74daa5d95504eade9c81ebbd5b8a</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>rest________::fb1a3d4523c95e63496e3bc7ba36244b</openaireId> <openaireId>10|rest________::fb1a3d4523c95e63496e3bc7ba36244b</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
</datasources> </datasources>
@ -743,27 +743,27 @@
</subjects> </subjects>
<datasources> <datasources>
<datasource> <datasource>
<openaireId>opendoar____::1a551829d50f1400b0dab21fdd969c04</openaireId> <openaireId>10|opendoar____::1a551829d50f1400b0dab21fdd969c04</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>opendoar____::49af6c4e558a7569d80eee2e035e2bd7</openaireId> <openaireId>10|opendoar____::49af6c4e558a7569d80eee2e035e2bd7</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>opendoar____::0266e33d3f546cb5436a10798e657d97</openaireId> <openaireId>10|opendoar____::0266e33d3f546cb5436a10798e657d97</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>opendoar____::fd4c2dc64ccb8496e6f1f94c85f30d06</openaireId> <openaireId>10|opendoar____::fd4c2dc64ccb8496e6f1f94c85f30d06</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>opendoar____::41bfd20a38bb1b0bec75acf0845530a7</openaireId> <openaireId>10|opendoar____::41bfd20a38bb1b0bec75acf0845530a7</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>opendoar____::87ae6fb631f7c8a627e8e28785d9992d</openaireId> <openaireId>10|opendoar____::87ae6fb631f7c8a627e8e28785d9992d</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
</datasources> </datasources>
@ -983,11 +983,11 @@
<subjects/> <subjects/>
<datasources> <datasources>
<datasource> <datasource>
<openaireId>opendoar____::7e7757b1e12abcb736ab9a754ffb617a</openaireId> <openaireId>10|opendoar____::7e7757b1e12abcb736ab9a754ffb617a</openaireId>
<selcriteria>{"criteria":[{"constraint":[{"verb":"contains","field":"contributor","value":"DARIAH"}]}]}</selcriteria> <selcriteria>{"criteria":[{"constraint":[{"verb":"contains","field":"contributor","value":"DARIAH"}]}]}</selcriteria>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>opendoar____::96da2f590cd7246bbde0051047b0d6f7</openaireId> <openaireId>10|opendoar____::96da2f590cd7246bbde0051047b0d6f7</openaireId>
<selcriteria>{"criteria":[{"constraint":[{"verb":"contains","field":"contributor","value":"DARIAH"}]}]}</selcriteria> <selcriteria>{"criteria":[{"constraint":[{"verb":"contains","field":"contributor","value":"DARIAH"}]}]}</selcriteria>
</datasource> </datasource>
</datasources> </datasources>
@ -1166,87 +1166,87 @@
</subjects> </subjects>
<datasources> <datasources>
<datasource> <datasource>
<openaireId>doajarticles::1c5bdf8fca58937894ad1441cca99b76</openaireId> <openaireId>10|doajarticles::1c5bdf8fca58937894ad1441cca99b76</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::b37a634324a45c821687e6e80e6f53b4</openaireId> <openaireId>10|doajarticles::b37a634324a45c821687e6e80e6f53b4</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::4bf64f2a104040e4e055cd9594b2d77c</openaireId> <openaireId>10|doajarticles::4bf64f2a104040e4e055cd9594b2d77c</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::479ca537c12755d1868bbf02938a900c</openaireId> <openaireId>10|doajarticles::479ca537c12755d1868bbf02938a900c</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::55f31df96a60e2309f45b7c265fcf7a2</openaireId> <openaireId>10|doajarticles::55f31df96a60e2309f45b7c265fcf7a2</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::c52a09891a5301f9986ebbfe3761810c</openaireId> <openaireId>10|doajarticles::c52a09891a5301f9986ebbfe3761810c</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::379807bc7f6c71a227ef1651462c414c</openaireId> <openaireId>10|doajarticles::379807bc7f6c71a227ef1651462c414c</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::36069db531a00b85a2e8fb301f4bdc19</openaireId> <openaireId>10|doajarticles::36069db531a00b85a2e8fb301f4bdc19</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::b6a898da311ded96fabf49c520b80d5d</openaireId> <openaireId>10|doajarticles::b6a898da311ded96fabf49c520b80d5d</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::d0753d9180b35a271d8b4a31f449749f</openaireId> <openaireId>10|doajarticles::d0753d9180b35a271d8b4a31f449749f</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::172050a92511838393a3fe237ae47e31</openaireId> <openaireId>10|doajarticles::172050a92511838393a3fe237ae47e31</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::301ed96c62abb160a3e29796efe5c95c</openaireId> <openaireId>10|doajarticles::301ed96c62abb160a3e29796efe5c95c</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::0f4f805b3d842f2c7f1b077c3426fa59</openaireId> <openaireId>10|doajarticles::0f4f805b3d842f2c7f1b077c3426fa59</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::ba73728b84437b8d48ae287b867c7215</openaireId> <openaireId>10|doajarticles::ba73728b84437b8d48ae287b867c7215</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::86faef424d804309ccf45f692523aa48</openaireId> <openaireId>10|doajarticles::86faef424d804309ccf45f692523aa48</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::73bd758fa41671de70964c3ecba013af</openaireId> <openaireId>10|doajarticles::73bd758fa41671de70964c3ecba013af</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::e661fc0bdb24af42b740a08f0ddc6cf4</openaireId> <openaireId>10|doajarticles::e661fc0bdb24af42b740a08f0ddc6cf4</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::a6d3052047d5dbfbd43d95b4afb0f3d7</openaireId> <openaireId>10|doajarticles::a6d3052047d5dbfbd43d95b4afb0f3d7</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::ca61df07089acc53a1569bde6673d82a</openaireId> <openaireId>10|doajarticles::ca61df07089acc53a1569bde6673d82a</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::237dd6f1606600459d0297abd8ed9976</openaireId> <openaireId>10|doajarticles::237dd6f1606600459d0297abd8ed9976</openaireId>
<selcriteria/> <selcriteria/>
</datasource> </datasource>
<datasource> <datasource>
<openaireId>doajarticles::fba6191177ede7c51ea1cdf58eae7f8b</openaireId> <openaireId>10|doajarticles::fba6191177ede7c51ea1cdf58eae7f8b</openaireId>
<selcriteria/> <selcriteria/>
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