test for the variuos steps of project update with programme

dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/CSVParserTest.java

@@ -1,43 +1,41 @@
+
 package eu.dnetlib.dhp.actionmanager.project;
 
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.List;
+
 import org.apache.commons.io.IOUtils;
 import org.junit.jupiter.api.BeforeAll;
 import org.junit.jupiter.api.Test;
 
-import java.io.IOException;
+import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVParser;
-import java.nio.file.Files;
-import java.nio.file.Path;
 
-public class ReadCSVTest {
+public class CSVParserTest {
 
-    private static Path workingDir;
+	private static Path workingDir;
 
-    @BeforeAll
+	@BeforeAll
-    public static void beforeAll() throws IOException {
+	public static void beforeAll() throws IOException {
-        workingDir = Files.createTempDirectory(eu.dnetlib.dhp.actionmanager.project.ReadCSVTest.class.getSimpleName());
+		workingDir = Files.createTempDirectory(CSVParserTest.class.getSimpleName());
 
+	}
 
-    }
+	@Test
-        @Test
+	public void readProgrammeTest() throws Exception {
-    public  void readProgrammeTest() throws Exception {
 
-        String programmecsv = IOUtils.toString(getClass()
+		String programmecsv = IOUtils
-                .getClassLoader().getResourceAsStream("eu/dnetlib/dhp/actionmanager/project/programme.csv"));
+			.toString(
-        ReadCSV
+				getClass()
-                .main(
+					.getClassLoader()
-                        new String[] {
+					.getResourceAsStream("eu/dnetlib/dhp/actionmanager/project/programme.csv"));
-                                "-fileURL",
-                                "http://cordis.europa.eu/data/reference/cordisref-H2020programmes.csv",
-                                "-outputPath",
-                                workingDir.toString() + "/project",
-                                "-hdfsPath",
-                                getClass().getResource("/eu/dnetlib/dhp/blacklist/blacklist").getPath(),
-                                "-mergesPath",
-                                getClass().getResource("/eu/dnetlib/dhp/blacklist/mergesRelOneMerge").getPath(),
-                        });
 
+		CSVParser csvParser = new CSVParser();
 
+		List<Object> pl = csvParser.parse(programmecsv, "eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme");
 
+		System.out.println(pl.size());
 
-    }
+	}
 }

dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/PrepareProgrammeTest.java

@@ -1,4 +1,94 @@
+
 package eu.dnetlib.dhp.actionmanager.project;
 
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import org.apache.commons.io.FileUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaRDD;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SparkSession;
+import org.junit.jupiter.api.AfterAll;
+import org.junit.jupiter.api.Assertions;
+import org.junit.jupiter.api.BeforeAll;
+import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+
+import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme;
+
 public class PrepareProgrammeTest {
+
+	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+	private static final ClassLoader cl = eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class
+		.getClassLoader();
+
+	private static SparkSession spark;
+
+	private static Path workingDir;
+	private static final Logger log = LoggerFactory
+		.getLogger(eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class);
+
+	@BeforeAll
+	public static void beforeAll() throws IOException {
+		workingDir = Files
+			.createTempDirectory(eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class.getSimpleName());
+		log.info("using work dir {}", workingDir);
+
+		SparkConf conf = new SparkConf();
+		conf.setAppName(eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class.getSimpleName());
+
+		conf.setMaster("local[*]");
+		conf.set("spark.driver.host", "localhost");
+		conf.set("hive.metastore.local", "true");
+		conf.set("spark.ui.enabled", "false");
+		conf.set("spark.sql.warehouse.dir", workingDir.toString());
+		conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
+
+		spark = SparkSession
+			.builder()
+			.appName(PrepareProgrammeTest.class.getSimpleName())
+			.config(conf)
+			.getOrCreate();
+	}
+
+	@AfterAll
+	public static void afterAll() throws IOException {
+		FileUtils.deleteDirectory(workingDir.toFile());
+		spark.stop();
+	}
+
+	@Test
+	public void numberDistinctProgrammeTest() throws Exception {
+		PrepareProgramme
+			.main(
+				new String[] {
+					"-isSparkSessionManaged",
+					Boolean.FALSE.toString(),
+					"-programmePath",
+					getClass().getResource("/eu/dnetlib/dhp/actionmanager/whole_programme.json").getPath(),
+					"-outputPath",
+					workingDir.toString() + "/preparedProgramme"
+				});
+
+		final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
+
+		JavaRDD<CSVProgramme> tmp = sc
+			.textFile(workingDir.toString() + "/preparedProgramme")
+			.map(item -> OBJECT_MAPPER.readValue(item, CSVProgramme.class));
+
+		Assertions.assertEquals(277, tmp.count());
+
+		Dataset<CSVProgramme> verificationDataset = spark.createDataset(tmp.rdd(), Encoders.bean(CSVProgramme.class));
+
+		Assertions.assertEquals(0, verificationDataset.filter("shortTitle =''").count());
+	}
+
 }

dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/SparkUpdateProjectTest.java

@@ -1,4 +1,94 @@
+
 package eu.dnetlib.dhp.actionmanager.project;
 
-public class SparkUpdateProjectSet {
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import org.apache.commons.io.FileUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaRDD;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SparkSession;
+import org.junit.jupiter.api.AfterAll;
+import org.junit.jupiter.api.Assertions;
+import org.junit.jupiter.api.BeforeAll;
+import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+
+import eu.dnetlib.dhp.schema.oaf.Project;
+
+public class SparkUpdateProjectTest {
+	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+	private static final ClassLoader cl = eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class
+		.getClassLoader();
+
+	private static SparkSession spark;
+
+	private static Path workingDir;
+	private static final Logger log = LoggerFactory
+		.getLogger(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class);
+
+	@BeforeAll
+	public static void beforeAll() throws IOException {
+		workingDir = Files
+			.createTempDirectory(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class.getSimpleName());
+		log.info("using work dir {}", workingDir);
+
+		SparkConf conf = new SparkConf();
+		conf.setAppName(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class.getSimpleName());
+
+		conf.setMaster("local[*]");
+		conf.set("spark.driver.host", "localhost");
+		conf.set("hive.metastore.local", "true");
+		conf.set("spark.ui.enabled", "false");
+		conf.set("spark.sql.warehouse.dir", workingDir.toString());
+		conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
+
+		spark = SparkSession
+			.builder()
+			.appName(SparkUpdateProjectTest.class.getSimpleName())
+			.config(conf)
+			.getOrCreate();
+	}
+
+	@AfterAll
+	public static void afterAll() throws IOException {
+		FileUtils.deleteDirectory(workingDir.toFile());
+		spark.stop();
+	}
+
+	@Test
+	public void numberDistinctProgrammeTest() throws Exception {
+		SparkAtomicActionJob
+			.main(
+				new String[] {
+					"-isSparkSessionManaged",
+					Boolean.FALSE.toString(),
+					"-programmePath",
+					getClass().getResource("/eu/dnetlib/dhp/actionmanager/preparedProgramme_whole.json").getPath(),
+					"-projectPath",
+					getClass().getResource("/eu/dnetlib/dhp/actionmanager/projects_subset.json").getPath(),
+					"-outputPath",
+					workingDir.toString() + "/actionSet"
+				});
+
+		final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
+
+		JavaRDD<Project> tmp = sc
+			.textFile(workingDir.toString() + "/actionSet")
+			.map(item -> OBJECT_MAPPER.readValue(item, Project.class));
+
+		Assertions.assertEquals(14, tmp.count());
+
+//        Dataset<CSVProgramme> verificationDataset = spark.createDataset(tmp.rdd(), Encoders.bean(CSVProgramme.class));
+//
+//        Assertions.assertEquals(0, verificationDataset.filter("shortTitle =''").count());
+	}
 }

dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/httpconnector/HttpConnectorTest.java

@@ -1,4 +1,39 @@
+
 package eu.dnetlib.dhp.actionmanager.project.httpconnector;
 
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.apache.http.conn.ssl.SSLConnectionSocketFactory;
+import org.apache.http.ssl.SSLContextBuilder;
+import org.junit.jupiter.api.BeforeAll;
+import org.junit.jupiter.api.Test;
+
 public class HttpConnectorTest {
+
+	private static final Log log = LogFactory.getLog(HttpConnectorTest.class);
+	private static HttpConnector connector;
+
+	private static final String URL = "http://cordis.europa.eu/data/reference/cordisref-H2020programmes.csv";
+	private static final String URL_MISCONFIGURED_SERVER = "https://www.alexandria.unisg.ch/cgi/oai2?verb=Identify";
+	private static final String URL_GOODSNI_SERVER = "https://air.unimi.it/oai/openaire?verb=Identify";
+
+	private static final SSLContextBuilder sslContextBuilder = new SSLContextBuilder();
+	private static SSLConnectionSocketFactory sslSocketFactory;
+
+	@BeforeAll
+	public static void setUp() {
+		connector = new HttpConnector();
+	}
+
+	@Test
+
+	public void testGetInputSource() throws CollectorServiceException {
+		System.out.println(connector.getInputSource(URL));
+	}
+
+	@Test
+	public void testGoodServers() throws CollectorServiceException {
+		System.out.println(connector.getInputSource(URL_GOODSNI_SERVER));
+	}
+
 }