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finished first implementation of wf

This commit is contained in:
Antonis Lempesis 2020-12-02 15:57:17 +02:00
parent 0948536614
commit 413afcfed5
24 changed files with 224 additions and 1156 deletions
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0
dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step18.sql → dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/computeProductionStats.sql
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dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step1.sql
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--------------------------------------------------------------
--------------------------------------------------------------
-- Stats database creation
--------------------------------------------------------------
--------------------------------------------------------------
DROP database IF EXISTS ${stats_db_name} CASCADE;
CREATE database ${stats_db_name};

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dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql
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------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
-- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture)
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS SELECT * FROM ${external_stats_db_name}.fundref;
CREATE OR REPLACE VIEW ${stats_db_name}.country AS SELECT * FROM ${external_stats_db_name}.country;
CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS SELECT * FROM ${external_stats_db_name}.countrygdp;
CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS SELECT * FROM ${external_stats_db_name}.roarmap;
CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS SELECT * FROM ${external_stats_db_name}.rndexpediture;
CREATE OR REPLACE VIEW ${stats_db_name}.context AS SELECT * FROM ${external_stats_db_name}.context;
CREATE OR REPLACE VIEW ${stats_db_name}.category AS SELECT * FROM ${external_stats_db_name}.category;
CREATE OR REPLACE VIEW ${stats_db_name}.concept AS SELECT * FROM ${external_stats_db_name}.concept;
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
-- Creation date of the database
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
create table ${stats_db_name}.creation_date as select date_format(current_date(), 'dd-MM-yyyy') as date;

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dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step11.sql
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----------------------------------------------------------------
----------------------------------------------------------------
-- Post processing - Updates on main tables
----------------------------------------------------------------
----------------------------------------------------------------
--Datasource temporary table updates
UPDATE ${stats_db_name}.datasource_tmp SET harvested='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${stats_db_name}.datasource_tmp d, ${stats_db_name}.result_datasources rd WHERE d.id=rd.datasource);
-- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
UPDATE ${stats_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${stats_db_name}.project_results pr, ${stats_db_name}.result r WHERE pr.result=r.id AND r.type='publication');
DROP TABLE IF EXISTS ${stats_db_name}.project;
CREATE TABLE ${stats_db_name}.project stored as parquet as
SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration,
CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs,
CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
p.callidentifier, p.code
FROM ${stats_db_name}.project_tmp p
LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
FROM ${stats_db_name}.project_results pr INNER JOIN ${stats_db_name}.result r ON pr.result=r.id
WHERE r.type='publication'
GROUP BY pr.id) AS prr1 on prr1.id = p.id
LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) AS daysForlastPub , count(distinct r.id) AS dp
FROM ${stats_db_name}.project_tmp pp, ${stats_db_name}.project_results pr, ${stats_db_name}.result r
WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
GROUP BY pp.id) AS prr2
ON prr2.id = p.id;
-- Publication temporary table updates
UPDATE ${stats_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
-- Dataset temporary table updates
UPDATE ${stats_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
-- Software temporary table updates
UPDATE ${stats_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
-- Oherresearchproduct temporary table updates
UPDATE ${stats_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend AS daysfromend FROM ${stats_db_name}.result_projects, ${stats_db_name}.result, ${stats_db_name}.project WHERE result_projects.id=result.id AND result.type='publication' AND project.id=result_projects.project;

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dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12.sql
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------------------------------------------------------------------------------------------------------
-- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables
------------------------------------------------------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.datasource;
CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS SELECT * FROM ${stats_db_name}.datasource_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.publication;
CREATE TABLE ${stats_db_name}.publication stored AS parquet AS SELECT * FROM ${stats_db_name}.publication_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.dataset;
CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS SELECT * FROM ${stats_db_name}.dataset_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.software;
CREATE TABLE ${stats_db_name}.software stored AS parquet AS SELECT * FROM ${stats_db_name}.software_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct;
CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS SELECT * FROM ${stats_db_name}.otherresearchproduct_tmp;
DROP TABLE ${stats_db_name}.project_tmp;
DROP TABLE ${stats_db_name}.datasource_tmp;
DROP TABLE ${stats_db_name}.publication_tmp;
DROP TABLE ${stats_db_name}.dataset_tmp;
DROP TABLE ${stats_db_name}.software_tmp;
DROP TABLE ${stats_db_name}.otherresearchproduct_tmp;
----------------------------------------------
-- Re-creating views from final parquet tables
---------------------------------------------
-- Result
CREATE OR REPLACE VIEW ${stats_db_name}.result AS SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.software UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.dataset UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct;
-------------------------------------------------------------------------------
-- To see with Antonis if the following is needed and where it should be placed
-------------------------------------------------------------------------------
CREATE TABLE ${stats_db_name}.numbers_country AS SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications FROM ${stats_db_name}.result r, ${stats_db_name}.result_datasources rd, ${stats_db_name}.datasource d, ${stats_db_name}.datasource_organizations dor, ${stats_db_name}.organization org WHERE r.id=rd.id AND rd.datasource=d.id AND d.id=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' GROUP BY org.country;

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------------------------------------------------------
------------------------------------------------------
-- Additional relations
--
-- Sources related tables/views
------------------------------------------------------
------------------------------------------------------
CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_sources as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.publication p lateral view explode(p.collectedfrom.key) c as datasource) p
LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_sources as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.dataset p lateral view explode(p.collectedfrom.key) c as datasource) p
LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_sources as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.software p lateral view explode(p.collectedfrom.key) c as datasource) p
LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_sources as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.collectedfrom.key) c as datasource) p
LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_sources AS
SELECT * FROM ${stats_db_name}.publication_sources
UNION ALL
SELECT * FROM ${stats_db_name}.dataset_sources
UNION ALL
SELECT * FROM ${stats_db_name}.software_sources
UNION ALL
SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;

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------------------------------------------------------
------------------------------------------------------
-- Additional relations
--
-- Licences related tables/views
------------------------------------------------------
------------------------------------------------------
CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_licenses AS
SELECT substr(p.id, 4) as id, licenses.value as type
from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.license) instances as licenses
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_licenses AS
SELECT substr(p.id, 4) as id, licenses.value as type
from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.license) instances as licenses
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_licenses AS
SELECT substr(p.id, 4) as id, licenses.value as type
from ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.license) instances as licenses
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_licenses AS
SELECT substr(p.id, 4) as id, licenses.value as type
from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.license) instances as licenses
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_licenses AS
SELECT * FROM ${stats_db_name}.publication_licenses
UNION ALL
SELECT * FROM ${stats_db_name}.dataset_licenses
UNION ALL
SELECT * FROM ${stats_db_name}.software_licenses
UNION ALL
SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization_pids AS
select substr(o.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid
from ${openaire_db_name}.organization o lateral view explode(o.pid) pids as ppid;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization_sources as
SELECT o.id, case when d.id is null then 'other' else o.datasource end as datasource
FROM (
SELECT substr(o.id, 4) as id, substr(instances.instance.key, 4) as datasource
from ${openaire_db_name}.organization o lateral view explode(o.collectedfrom) instances as instance) o
LEFT OUTER JOIN (
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on o.datasource = d.id;

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------------------------------------------------------
------------------------------------------------------
-- Additional relations
--
-- Refereed related tables/views
------------------------------------------------------
------------------------------------------------------
CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_refereed as
select substr(r.id, 4) as id, inst.refereed.classname as refereed
from ${openaire_db_name}.publication r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_refereed as
select substr(r.id, 4) as id, inst.refereed.classname as refereed
from ${openaire_db_name}.dataset r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_refereed as
select substr(r.id, 4) as id, inst.refereed.classname as refereed
from ${openaire_db_name}.software r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_refereed as
select substr(r.id, 4) as id, inst.refereed.classname as refereed
from ${openaire_db_name}.otherresearchproduct r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false;
CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_refereed as
select * from ${stats_db_name}.publication_refereed
union all
select * from ${stats_db_name}.dataset_refereed
union all
select * from ${stats_db_name}.software_refereed
union all
select * from ${stats_db_name}.otherresearchproduct_refereed;

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----------------------------------------------------
-- Shortcuts for various definitions in stats db ---
----------------------------------------------------
-- Peer reviewed:
-- Results that have been collected from Crossref
create table ${stats_db_name}.result_peerreviewed as
with peer_reviewed as (
select distinct r.id as id
from ${stats_db_name}.result r
join ${stats_db_name}.result_sources rs on rs.id=r.id
join ${stats_db_name}.datasource d on d.id=rs.datasource
where d.name='Crossref')
select distinct peer_reviewed.id as id, true as peer_reviewed
from peer_reviewed
union all
select distinct r.id as id, false as peer_reviewed
from ${stats_db_name}.result r
left outer join peer_reviewed pr on pr.id=r.id
where pr.id is null;
-- Green OA:
-- OA results that are hosted by an Institutional repository and have NOT been harvested from a DOAJ journal.
create table ${stats_db_name}.result_greenoa as
with result_green as (
select distinct r.id as id
from ${stats_db_name}.result r
join ${stats_db_name}.result_datasources rd on rd.id=r.id
join ${stats_db_name}.datasource d on d.id=rd.datasource
left outer join (
select rd.id from ${stats_db_name}.result_datasources rd
join ${stats_db_name}.datasource d on rd.datasource=d.id
join ${stats_db_name}.datasource_sources sds on sds.id=d.id
join ${stats_db_name}.datasource sd on sd.id=sds.datasource
where sd.name='DOAJ-ARTICLES'
) as doaj on doaj.id=r.id
where r.bestlicence in ('Open Access', 'Open Source') and d.type='Institutional Repository' and doaj.id is null)
select distinct result_green.id, true as green
from result_green
union all
select distinct r.id as id, false as green
from ${stats_db_name}.result r
left outer join result_green rg on rg.id=r.id
where rg.id is null;
-- GOLD OA:
-- OA results that have been harvested from a DOAJ journal.
create table ${stats_db_name}.result_gold as
with result_gold as (
select distinct r.id as id
from ${stats_db_name}.result r
join ${stats_db_name}.result_datasources rd on rd.id=r.id
join ${stats_db_name}.datasource d on d.id=rd.datasource
join ${stats_db_name}.datasource_sources sds on sds.id=d.id
join ${stats_db_name}.datasource sd on sd.id=sds.datasource
where r.type='publication' and r.bestlicence='Open Access' and sd.name='DOAJ-Articles')
select distinct result_gold.id, true as gold
from result_gold
union all
select distinct r.id, false as gold
from ${stats_db_name}.result r
where r.id not in (select id from result_gold);
-- shortcut result-country through the organization affiliation
create table ${stats_db_name}.result_affiliated_country as
select r.id as id, o.country as country
from ${stats_db_name}.result r
join ${stats_db_name}.result_organization ro on ro.id=r.id
join ${stats_db_name}.organization o on o.id=ro.organization
where o.country is not null and o.country!='';
-- shortcut result-country through datasource of deposition
create table ${stats_db_name}.result_deposited_country as
select r.id as id, o.country as country
from ${stats_db_name}.result r
join ${stats_db_name}.result_datasources rd on rd.id=r.id
join ${stats_db_name}.datasource d on d.id=rd.datasource
join ${stats_db_name}.datasource_organizations dor on dor.id=d.id
join ${stats_db_name}.organization o on o.id=dor.organization
where o.country is not null and o.country!='';

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-- replace the creation of the result view to include the boolean fields from the previous tables (green, gold,
-- peer reviewed)
drop table if exists ${stats_db_name}.result_tmp;
CREATE TABLE ${stats_db_name}.result_tmp (
id STRING,
title STRING,
publisher STRING,
journal STRING,
`date` STRING,
`year` INT,
bestlicence STRING,
access_mode STRING,
embargo_end_date STRING,
delayed BOOLEAN,
authors INT,
source STRING,
abstract BOOLEAN,
type STRING ,
peer_reviewed BOOLEAN,
green BOOLEAN,
gold BOOLEAN)
clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
insert into ${stats_db_name}.result_tmp
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
FROM ${stats_db_name}.publication r
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
insert into ${stats_db_name}.result_tmp
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
FROM ${stats_db_name}.dataset r
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
insert into ${stats_db_name}.result_tmp
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
FROM ${stats_db_name}.software r
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
insert into ${stats_db_name}.result_tmp
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
FROM ${stats_db_name}.otherresearchproduct r
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
drop table if exists ${stats_db_name}.result;
drop view if exists ${stats_db_name}.result;
create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp;
drop table ${stats_db_name}.result_tmp;

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-------------------------------------------
--- Extra tables, mostly used by indicators
create table ${stats_db_name}.result_projectcount as
select r.id, count(distinct p.id) as count
from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_projects rp on rp.id=r.id
left outer join ${stats_db_name}.project p on p.id=rp.project
group by r.id;
create table ${stats_db_name}.result_fundercount as
select r.id, count(distinct p.funder) as count
from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_projects rp on rp.id=r.id
left outer join ${stats_db_name}.project p on p.id=rp.project
group by r.id;
create table ${stats_db_name}.project_resultcount as
with rcount as (
select p.id as pid, count(distinct r.id) as `count`, r.type as type
from ${stats_db_name}.project p
left outer join ${stats_db_name}.result_projects rp on rp.project=p.id
left outer join ${stats_db_name}.result r on r.id=rp.id
group by r.type, p.id )
select rcount.pid, sum(case when rcount.type='publication' then rcount.count else 0 end) as publications,
sum(case when rcount.type='dataset' then rcount.count else 0 end) as datasets,
sum(case when rcount.type='software' then rcount.count else 0 end) as software,
sum(case when rcount.type='other' then rcount.count else 0 end) as other
from rcount
group by rcount.pid;
create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture

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------------------------------------------------------
------------------------------------------------------
-- Shadow schema table exchange
------------------------------------------------------
------------------------------------------------------
-- Dropping old views
DROP VIEW IF EXISTS ${stats_db_shadow_name}.category;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.concept;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.context;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.countrygdp;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.creation_date;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_organizations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_results;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.funder;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.fundref;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.numbers_country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_projects;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_organizations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_resultcount;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results_publication;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_affiliated_country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_deposited_country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_fundercount;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_gold;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_greenoa;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_organization;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_peerreviewed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projectcount;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projects;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.rndexpediture;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.roarmap;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_topics;
-- Creating the shadow database, in case it doesn't exist
CREATE database IF NOT EXISTS ${stats_db_shadow_name};
-- Creating new views
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.category AS SELECT * FROM ${stats_db_name}.category;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.concept AS SELECT * FROM ${stats_db_name}.concept;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.context AS SELECT * FROM ${stats_db_name}.context;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.country AS SELECT * FROM ${stats_db_name}.country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.countrygdp AS SELECT * FROM ${stats_db_name}.countrygdp;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.creation_date AS SELECT * FROM ${stats_db_name}.creation_date;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset AS SELECT * FROM ${stats_db_name}.dataset;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_citations AS SELECT * FROM ${stats_db_name}.dataset_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_classifications AS SELECT * FROM ${stats_db_name}.dataset_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_concepts AS SELECT * FROM ${stats_db_name}.dataset_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_datasources AS SELECT * FROM ${stats_db_name}.dataset_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_languages AS SELECT * FROM ${stats_db_name}.dataset_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_licenses AS SELECT * FROM ${stats_db_name}.dataset_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_oids AS SELECT * FROM ${stats_db_name}.dataset_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_pids AS SELECT * FROM ${stats_db_name}.dataset_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_refereed AS SELECT * FROM ${stats_db_name}.dataset_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_sources AS SELECT * FROM ${stats_db_name}.dataset_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_topics AS SELECT * FROM ${stats_db_name}.dataset_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource AS SELECT * FROM ${stats_db_name}.datasource;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_languages AS SELECT * FROM ${stats_db_name}.datasource_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_oids AS SELECT * FROM ${stats_db_name}.datasource_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_organizations AS SELECT * FROM ${stats_db_name}.datasource_organizations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_results AS SELECT * FROM ${stats_db_name}.datasource_results;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_sources AS SELECT * FROM ${stats_db_name}.datasource_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.funder AS SELECT * FROM ${stats_db_name}.funder;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.fundref AS SELECT * FROM ${stats_db_name}.fundref;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.numbers_country AS SELECT * FROM ${stats_db_name}.numbers_country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization AS SELECT * FROM ${stats_db_name}.organization;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_datasources AS SELECT * FROM ${stats_db_name}.organization_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_pids AS SELECT * FROM ${stats_db_name}.organization_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_projects AS SELECT * FROM ${stats_db_name}.organization_projects;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_sources AS SELECT * FROM ${stats_db_name}.organization_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct AS SELECT * FROM ${stats_db_name}.otherresearchproduct;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations AS SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications AS SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts AS SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages AS SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses AS SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed AS SELECT * FROM ${stats_db_name}.otherresearchproduct_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics AS SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project AS SELECT * FROM ${stats_db_name}.project;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_oids AS SELECT * FROM ${stats_db_name}.project_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_organizations AS SELECT * FROM ${stats_db_name}.project_organizations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results AS SELECT * FROM ${stats_db_name}.project_results;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_resultcount AS SELECT * FROM ${stats_db_name}.project_resultcount;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results_publication AS SELECT * FROM ${stats_db_name}.project_results_publication;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication AS SELECT * FROM ${stats_db_name}.publication;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_citations AS SELECT * FROM ${stats_db_name}.publication_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_languages AS SELECT * FROM ${stats_db_name}.publication_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_licenses AS SELECT * FROM ${stats_db_name}.publication_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_oids AS SELECT * FROM ${stats_db_name}.publication_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_pids AS SELECT * FROM ${stats_db_name}.publication_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_refereed AS SELECT * FROM ${stats_db_name}.publication_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_sources AS SELECT * FROM ${stats_db_name}.publication_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_topics AS SELECT * FROM ${stats_db_name}.publication_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result AS SELECT * FROM ${stats_db_name}.result;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_affiliated_country AS SELECT * FROM ${stats_db_name}.result_affiliated_country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_citations AS SELECT * FROM ${stats_db_name}.result_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_classifications AS SELECT * FROM ${stats_db_name}.result_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_concepts AS SELECT * FROM ${stats_db_name}.result_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_datasources AS SELECT * FROM ${stats_db_name}.result_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_deposited_country AS SELECT * FROM ${stats_db_name}.result_deposited_country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_fundercount AS SELECT * FROM ${stats_db_name}.result_fundercount;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_gold AS SELECT * FROM ${stats_db_name}.result_gold;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_greenoa AS SELECT * FROM ${stats_db_name}.result_greenoa;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_languages AS SELECT * FROM ${stats_db_name}.result_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_licenses AS SELECT * FROM ${stats_db_name}.result_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_oids AS SELECT * FROM ${stats_db_name}.result_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_organization AS SELECT * FROM ${stats_db_name}.result_organization;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_peerreviewed AS SELECT * FROM ${stats_db_name}.result_peerreviewed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_pids AS SELECT * FROM ${stats_db_name}.result_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projectcount AS SELECT * FROM ${stats_db_name}.result_projectcount;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projects AS SELECT * FROM ${stats_db_name}.result_projects;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_refereed AS SELECT * FROM ${stats_db_name}.result_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_sources AS SELECT * FROM ${stats_db_name}.result_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_topics AS SELECT * FROM ${stats_db_name}.result_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.rndexpediture AS SELECT * FROM ${stats_db_name}.rndexpediture;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.roarmap AS SELECT * FROM ${stats_db_name}.roarmap;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software AS SELECT * FROM ${stats_db_name}.software;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_citations AS SELECT * FROM ${stats_db_name}.software_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_classifications AS SELECT * FROM ${stats_db_name}.software_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_concepts AS SELECT * FROM ${stats_db_name}.software_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_datasources AS SELECT * FROM ${stats_db_name}.software_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_languages AS SELECT * FROM ${stats_db_name}.software_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_licenses AS SELECT * FROM ${stats_db_name}.software_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_oids AS SELECT * FROM ${stats_db_name}.software_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_pids AS SELECT * FROM ${stats_db_name}.software_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_refereed AS SELECT * FROM ${stats_db_name}.software_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_sources AS SELECT * FROM ${stats_db_name}.software_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_topics AS SELECT * FROM ${stats_db_name}.software_topics;

8
dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step19.sql
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@ -1,8 +0,0 @@
------------------------------------------------------
------------------------------------------------------
-- Impala table statistics - Needed to make the tables
-- visible for impala
------------------------------------------------------
------------------------------------------------------
INVALIDATE METADATA ${stats_db_name};

44
dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql
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@ -1,44 +0,0 @@
--------------------------------------------------------------
--------------------------------------------------------------
-- Publication table/view and Publication related tables/views
--------------------------------------------------------------
--------------------------------------------------------------
-- Publication temporary table
DROP TABLE IF EXISTS ${stats_db_name}.publication_tmp;
CREATE TABLE ${stats_db_name}.publication_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal ,
p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence,
p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source,
case when size(p.description) > 0 then true else false end as abstract,
'publication' as type
from ${openaire_db_name}.publication p
where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.publication p LATERAL VIEW explode(p.context) contexts as context where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_datasources as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance
where p.datainfo.deletedbyinference=false ) p
LEFT OUTER JOIN (
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false ) d on p.datasource = d.id;
CREATE TABLE ${stats_db_name}.publication_languages AS select substr(p.id, 4) as id, p.language.classname as language FROM ${openaire_db_name}.publication p where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_topics as select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
-- Publication_citations
CREATE TABLE ${stats_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and p.datainfo.deletedbyinference=false;

36
dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step3.sql
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@ -1,36 +0,0 @@
------------------------------------------------------
------------------------------------------------------
-- Dataset table/view and Dataset related tables/views
------------------------------------------------------
------------------------------------------------------
-- Dataset temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp;
CREATE TABLE ${stats_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored AS orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.dataset_tmp SELECT substr(d.id, 4) AS id, d.title[0].value AS title, d.publisher.value AS publisher, cast(null AS string) AS journal,
d.dateofacceptance.value as date, date_format(d.dateofacceptance.value,'yyyy') AS year, d.bestaccessright.classname AS bestlicence,
d.embargoenddate.value AS embargo_end_date, false AS delayed, size(d.author) AS authors , concat_ws('\u003B',d.source.value) AS source,
CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract,
'dataset' AS type
FROM ${openaire_db_name}.dataset d
WHERE d.datainfo.deletedbyinference=FALSE;
-- Dataset_citations
CREATE TABLE ${stats_db_name}.dataset_citations AS SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.dataset d LATERAL VIEW explode(d.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and d.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_datasources AS SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance) instances AS instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
CREATE TABLE ${stats_db_name}.dataset_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.dataset p where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;

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@ -1,36 +0,0 @@
--------------------------------------------------------
--------------------------------------------------------
-- Software table/view and Software related tables/views
--------------------------------------------------------
--------------------------------------------------------
-- Software temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.software_tmp;
CREATE TABLE ${stats_db_name}.software_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.software_tmp SELECT substr(s.id, 4) as id, s.title[0].value AS title, s.publisher.value AS publisher, CAST(NULL AS string) AS journal,
s.dateofacceptance.value AS DATE, date_format(s.dateofacceptance.value,'yyyy') AS YEAR, s.bestaccessright.classname AS bestlicence,
s.embargoenddate.value AS embargo_end_date, FALSE AS delayed, SIZE(s.author) AS authors , concat_ws('\u003B',s.source.value) AS source,
CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'software' as type
from ${openaire_db_name}.software s
where s.datainfo.deletedbyinference=false;
-- Software_citations
CREATE TABLE ${stats_db_name}.software_citations AS SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.software s LATERAL VIEW explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and s.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.context) contexts AS context where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance) instances AS instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
CREATE TABLE ${stats_db_name}.software_languages AS select substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.software p where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;

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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-- Otherresearchproduct table/view and Otherresearchproduct related tables/views
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-- Otherresearchproduct temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp;
CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp ( id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.otherresearchproduct_tmp SELECT substr(o.id, 4) AS id, o.title[0].value AS title, o.publisher.value AS publisher, CAST(NULL AS string) AS journal,
o.dateofacceptance.value AS DATE, date_format(o.dateofacceptance.value,'yyyy') AS year, o.bestaccessright.classname AS bestlicence,
o.embargoenddate.value as embargo_end_date, FALSE AS delayed, SIZE(o.author) AS authors , concat_ws('\u003B',o.source.value) AS source,
CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'other' AS type
FROM ${openaire_db_name}.otherresearchproduct o
WHERE o.datainfo.deletedbyinference=FALSE;
-- Otherresearchproduct_citations
CREATE TABLE ${stats_db_name}.otherresearchproduct_citations AS SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.otherresearchproduct o LATERAL VIEW explode(o.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and o.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.otherresearchproduct p where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;

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@ -1,30 +0,0 @@
-- noinspection SqlNoDataSourceInspectionForFile
------------------------------------------------------
------------------------------------------------------
-- Project table/view and Project related tables/views
------------------------------------------------------
------------------------------------------------------
-- Project_oids Table
DROP TABLE IF EXISTS ${stats_db_name}.project_oids;
CREATE TABLE ${stats_db_name}.project_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids;
-- Project_organizations Table
DROP TABLE IF EXISTS ${stats_db_name}.project_organizations;
CREATE TABLE ${stats_db_name}.project_organizations AS SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization from ${openaire_db_name}.relation r WHERE r.reltype='projectOrganization';
-- Project_results Table
DROP TABLE IF EXISTS ${stats_db_name}.project_results;
CREATE TABLE ${stats_db_name}.project_results AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result FROM ${openaire_db_name}.relation r WHERE r.reltype='resultProject' and r.datainfo.deletedbyinference=false;
-- Project table
----------------
-- Creating and populating temporary Project table
DROP TABLE IF EXISTS ${stats_db_name}.project_tmp;
CREATE TABLE ${stats_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year INT, end_year INT, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.project_tmp SELECT substr(p.id, 4) AS id, p.acronym.value AS acronym, p.title.value AS title, xpath_string(p.fundingtree[0].value, '//funder/name') AS funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2, p.ecsc39.value AS ec39, p.contracttype.classname AS type, p.startdate.value AS startdate, p.enddate.value AS enddate, year(p.startdate.value) AS start_year, year(p.enddate.value) AS end_year, CAST(MONTHS_BETWEEN(p.enddate.value, p.startdate.value) AS INT) AS duration, 'no' AS haspubs, 0 AS numpubs, 0 AS daysforlastpub, 0 AS delayedpubs, p.callidentifier.value AS callidentifier, p.code.value AS code FROM ${openaire_db_name}.project p WHERE p.datainfo.deletedbyinference=false;
create table ${stats_db_name}.funder as
select distinct xpath_string(fund, '//funder/id') as id, xpath_string(fund, '//funder/name') as name, xpath_string(fund, '//funder/shortname') as shortname
from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund

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@ -1,31 +0,0 @@
----------------------------------------------------
----------------------------------------------------
-- Result table/view and Result related tables/views
----------------------------------------------------
----------------------------------------------------
-- Views on temporary tables that should be re-created in the end
CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.software_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct_tmp;
-- Views on final tables
CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources UNION ALL SELECT * FROM ${stats_db_name}.software_datasources UNION ALL SELECT * FROM ${stats_db_name}.dataset_datasources UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS SELECT * FROM ${stats_db_name}.publication_citations UNION ALL SELECT * FROM ${stats_db_name}.software_citations UNION ALL SELECT * FROM ${stats_db_name}.dataset_citations UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications UNION ALL SELECT * FROM ${stats_db_name}.software_classifications UNION ALL SELECT * FROM ${stats_db_name}.dataset_classifications UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts UNION ALL SELECT * FROM ${stats_db_name}.software_concepts UNION ALL SELECT * FROM ${stats_db_name}.dataset_concepts UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS SELECT * FROM ${stats_db_name}.publication_languages UNION ALL SELECT * FROM ${stats_db_name}.software_languages UNION ALL SELECT * FROM ${stats_db_name}.dataset_languages UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS SELECT * FROM ${stats_db_name}.publication_oids UNION ALL SELECT * FROM ${stats_db_name}.software_oids UNION ALL SELECT * FROM ${stats_db_name}.dataset_oids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS SELECT * FROM ${stats_db_name}.publication_pids UNION ALL SELECT * FROM ${stats_db_name}.software_pids UNION ALL SELECT * FROM ${stats_db_name}.dataset_pids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS SELECT * FROM ${stats_db_name}.publication_topics UNION ALL SELECT * FROM ${stats_db_name}.software_topics UNION ALL SELECT * FROM ${stats_db_name}.dataset_topics UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
DROP TABLE IF EXISTS ${stats_db_name}.result_organization;
CREATE TABLE ${stats_db_name}.result_organization AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='resultOrganization';
DROP TABLE IF EXISTS ${stats_db_name}.result_projects;
CREATE TABLE ${stats_db_name}.result_projects AS select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend FROM ${stats_db_name}.result r JOIN ${stats_db_name}.project_results pr ON r.id=pr.result JOIN ${stats_db_name}.project_tmp p ON p.id=pr.id;

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@ -1,58 +0,0 @@
-- noinspection SqlNoDataSourceInspectionForFile
------------------------------------------------------------
------------------------------------------------------------
-- Datasource table/view and Datasource related tables/views
------------------------------------------------------------
------------------------------------------------------------
-- Datasource table creation & update
-------------------------------------
-- Creating and populating temporary datasource table
DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp;
CREATE TABLE ${stats_db_name}.datasource_tmp(`id` string, `name` STRING, `type` STRING, `dateofvalidation` STRING, `yearofvalidation` string, `harvested` BOOLEAN, `piwik_id` INT, `latitude` STRING, `longitude`STRING, `websiteurl` STRING, `compatibility` STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
-- Insert statement that takes into account the piwik_id of the openAIRE graph
INSERT INTO ${stats_db_name}.datasource_tmp
SELECT substr(d1.id, 4) AS id, officialname.value AS name,
datasourcetype.classname AS type, dateofvalidation.value AS dateofvalidation, date_format(d1.dateofvalidation.value,'yyyy') AS yearofvalidation,
FALSE AS harvested,
CASE WHEN d2.piwik_id IS NULL THEN 0 ELSE d2.piwik_id END AS piwik_id,
d1.latitude.value AS latitude, d1.longitude.value AS longitude,
d1.websiteurl.value AS websiteurl, d1.openairecompatibility.classid AS compatibility
FROM ${openaire_db_name}.datasource d1
LEFT OUTER JOIN
(SELECT id, split(originalidd, '\\:')[1] as piwik_id
FROM ${openaire_db_name}.datasource
LATERAL VIEW EXPLODE(originalid) temp AS originalidd
WHERE originalidd like "piwik:%") AS d2
ON d1.id = d2.id
WHERE d1.datainfo.deletedbyinference=FALSE;
-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table.
-- Creating a temporary dual table that will be removed after the following insert
CREATE TABLE ${stats_db_name}.dual(dummy CHAR(1));
INSERT INTO ${stats_db_name}.dual VALUES('X');
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${stats_db_name}.dual WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name='Unknown Repository');
DROP TABLE ${stats_db_name}.dual;
UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name='Unknown Repository';
UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1';
DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages;
CREATE TABLE ${stats_db_name}.datasource_languages AS SELECT substr(d.id, 4) AS id, langs.languages AS language FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids;
CREATE TABLE ${stats_db_name}.datasource_oids AS SELECT substr(d.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations;
CREATE TABLE ${stats_db_name}.datasource_organizations AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='datasourceOrganization';
-- datasource sources:
-- where the datasource info have been collected from.
create table if not exists ${stats_db_name}.datasource_sources AS select substr(d.id,4) as id, substr(cf.key, 4) as datasource from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf where d.datainfo.deletedbyinference=false;
CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${stats_db_name}.result_datasources;

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@ -1,12 +0,0 @@
----------------------------------------------------------------
----------------------------------------------------------------
-- Organization table/view and Organization related tables/views
----------------------------------------------------------------
----------------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.organization;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.legalshortname.value as legalshortname, o.country.classid as country
FROM ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=FALSE;
CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations;
CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${stats_db_name}.project_organizations;

207
dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/updateProductionViews.sql Normal file
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@ -0,0 +1,207 @@
------------------------------------------------------
------------------------------------------------------
-- Shadow schema table exchange
------------------------------------------------------
------------------------------------------------------
-- Dropping old views
DROP VIEW IF EXISTS ${stats_db_production_name}.category;
DROP VIEW IF EXISTS ${stats_db_production_name}.concept;
DROP VIEW IF EXISTS ${stats_db_production_name}.context;
DROP VIEW IF EXISTS ${stats_db_production_name}.country;
DROP VIEW IF EXISTS ${stats_db_production_name}.countrygdp;
DROP VIEW IF EXISTS ${stats_db_production_name}.creation_date;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_citations;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_classifications;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_concepts;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_datasources;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_languages;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_licenses;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_oids;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_pids;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_refereed;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_sources;
DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_topics;
DROP VIEW IF EXISTS ${stats_db_production_name}.datasource;
DROP VIEW IF EXISTS ${stats_db_production_name}.datasource_languages;
DROP VIEW IF EXISTS ${stats_db_production_name}.datasource_oids;
DROP VIEW IF EXISTS ${stats_db_production_name}.datasource_organizations;
DROP VIEW IF EXISTS ${stats_db_production_name}.datasource_results;
DROP VIEW IF EXISTS ${stats_db_production_name}.datasource_sources;
DROP VIEW IF EXISTS ${stats_db_production_name}.funder;
DROP VIEW IF EXISTS ${stats_db_production_name}.fundref;
DROP VIEW IF EXISTS ${stats_db_production_name}.numbers_country;
DROP VIEW IF EXISTS ${stats_db_production_name}.organization;
DROP VIEW IF EXISTS ${stats_db_production_name}.organization_datasources;
DROP VIEW IF EXISTS ${stats_db_production_name}.organization_pids;
DROP VIEW IF EXISTS ${stats_db_production_name}.organization_projects;
DROP VIEW IF EXISTS ${stats_db_production_name}.organization_sources;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_citations;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_classifications;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_concepts;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_datasources;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_languages;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_licenses;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_oids;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_pids;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_refereed;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_sources;
DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_topics;
DROP VIEW IF EXISTS ${stats_db_production_name}.project;
DROP VIEW IF EXISTS ${stats_db_production_name}.project_oids;
DROP VIEW IF EXISTS ${stats_db_production_name}.project_organizations;
DROP VIEW IF EXISTS ${stats_db_production_name}.project_results;
DROP VIEW IF EXISTS ${stats_db_production_name}.project_resultcount;
DROP VIEW IF EXISTS ${stats_db_production_name}.project_results_publication;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_citations;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_classifications;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_concepts;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_datasources;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_languages;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_licenses;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_oids;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_pids;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_refereed;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_sources;
DROP VIEW IF EXISTS ${stats_db_production_name}.publication_topics;
DROP VIEW IF EXISTS ${stats_db_production_name}.result;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_affiliated_country;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_citations;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_classifications;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_concepts;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_datasources;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_deposited_country;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_fundercount;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_gold;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_greenoa;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_languages;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_licenses;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_oids;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_organization;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_peerreviewed;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_pids;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_projectcount;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_projects;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_refereed;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_sources;
DROP VIEW IF EXISTS ${stats_db_production_name}.result_topics;
DROP VIEW IF EXISTS ${stats_db_production_name}.rndexpediture;
DROP VIEW IF EXISTS ${stats_db_production_name}.roarmap;
DROP VIEW IF EXISTS ${stats_db_production_name}.software;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_citations;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_classifications;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_concepts;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_datasources;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_languages;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_licenses;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_oids;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_pids;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_refereed;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_sources;
DROP VIEW IF EXISTS ${stats_db_production_name}.software_topics;
-- Creating the shadow database, in case it doesn't exist
CREATE database IF NOT EXISTS ${stats_db_production_name};
-- Creating new views
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.category AS SELECT * FROM ${stats_db_name}.category;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.concept AS SELECT * FROM ${stats_db_name}.concept;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.context AS SELECT * FROM ${stats_db_name}.context;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.country AS SELECT * FROM ${stats_db_name}.country;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.countrygdp AS SELECT * FROM ${stats_db_name}.countrygdp;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.creation_date AS SELECT * FROM ${stats_db_name}.creation_date;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset AS SELECT * FROM ${stats_db_name}.dataset;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_citations AS SELECT * FROM ${stats_db_name}.dataset_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_classifications AS SELECT * FROM ${stats_db_name}.dataset_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_concepts AS SELECT * FROM ${stats_db_name}.dataset_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_datasources AS SELECT * FROM ${stats_db_name}.dataset_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_languages AS SELECT * FROM ${stats_db_name}.dataset_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_licenses AS SELECT * FROM ${stats_db_name}.dataset_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_oids AS SELECT * FROM ${stats_db_name}.dataset_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_pids AS SELECT * FROM ${stats_db_name}.dataset_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_refereed AS SELECT * FROM ${stats_db_name}.dataset_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_sources AS SELECT * FROM ${stats_db_name}.dataset_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_topics AS SELECT * FROM ${stats_db_name}.dataset_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource AS SELECT * FROM ${stats_db_name}.datasource;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource_languages AS SELECT * FROM ${stats_db_name}.datasource_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource_oids AS SELECT * FROM ${stats_db_name}.datasource_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource_organizations AS SELECT * FROM ${stats_db_name}.datasource_organizations;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource_results AS SELECT * FROM ${stats_db_name}.datasource_results;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource_sources AS SELECT * FROM ${stats_db_name}.datasource_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.funder AS SELECT * FROM ${stats_db_name}.funder;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.fundref AS SELECT * FROM ${stats_db_name}.fundref;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.numbers_country AS SELECT * FROM ${stats_db_name}.numbers_country;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.organization AS SELECT * FROM ${stats_db_name}.organization;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.organization_datasources AS SELECT * FROM ${stats_db_name}.organization_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.organization_pids AS SELECT * FROM ${stats_db_name}.organization_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.organization_projects AS SELECT * FROM ${stats_db_name}.organization_projects;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.organization_sources AS SELECT * FROM ${stats_db_name}.organization_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct AS SELECT * FROM ${stats_db_name}.otherresearchproduct;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_citations AS SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_classifications AS SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_concepts AS SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_datasources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_languages AS SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_licenses AS SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_oids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_pids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_refereed AS SELECT * FROM ${stats_db_name}.otherresearchproduct_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_sources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_topics AS SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project AS SELECT * FROM ${stats_db_name}.project;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project_oids AS SELECT * FROM ${stats_db_name}.project_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project_organizations AS SELECT * FROM ${stats_db_name}.project_organizations;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project_results AS SELECT * FROM ${stats_db_name}.project_results;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project_resultcount AS SELECT * FROM ${stats_db_name}.project_resultcount;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project_results_publication AS SELECT * FROM ${stats_db_name}.project_results_publication;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication AS SELECT * FROM ${stats_db_name}.publication;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_citations AS SELECT * FROM ${stats_db_name}.publication_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_languages AS SELECT * FROM ${stats_db_name}.publication_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_licenses AS SELECT * FROM ${stats_db_name}.publication_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_oids AS SELECT * FROM ${stats_db_name}.publication_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_pids AS SELECT * FROM ${stats_db_name}.publication_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_refereed AS SELECT * FROM ${stats_db_name}.publication_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_sources AS SELECT * FROM ${stats_db_name}.publication_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_topics AS SELECT * FROM ${stats_db_name}.publication_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result AS SELECT * FROM ${stats_db_name}.result;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_affiliated_country AS SELECT * FROM ${stats_db_name}.result_affiliated_country;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_citations AS SELECT * FROM ${stats_db_name}.result_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_classifications AS SELECT * FROM ${stats_db_name}.result_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_concepts AS SELECT * FROM ${stats_db_name}.result_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_datasources AS SELECT * FROM ${stats_db_name}.result_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_deposited_country AS SELECT * FROM ${stats_db_name}.result_deposited_country;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_fundercount AS SELECT * FROM ${stats_db_name}.result_fundercount;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_gold AS SELECT * FROM ${stats_db_name}.result_gold;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_greenoa AS SELECT * FROM ${stats_db_name}.result_greenoa;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_languages AS SELECT * FROM ${stats_db_name}.result_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_licenses AS SELECT * FROM ${stats_db_name}.result_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_oids AS SELECT * FROM ${stats_db_name}.result_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_organization AS SELECT * FROM ${stats_db_name}.result_organization;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_peerreviewed AS SELECT * FROM ${stats_db_name}.result_peerreviewed;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_pids AS SELECT * FROM ${stats_db_name}.result_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_projectcount AS SELECT * FROM ${stats_db_name}.result_projectcount;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_projects AS SELECT * FROM ${stats_db_name}.result_projects;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_refereed AS SELECT * FROM ${stats_db_name}.result_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_sources AS SELECT * FROM ${stats_db_name}.result_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_topics AS SELECT * FROM ${stats_db_name}.result_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.rndexpediture AS SELECT * FROM ${stats_db_name}.rndexpediture;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.roarmap AS SELECT * FROM ${stats_db_name}.roarmap;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software AS SELECT * FROM ${stats_db_name}.software;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_citations AS SELECT * FROM ${stats_db_name}.software_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_classifications AS SELECT * FROM ${stats_db_name}.software_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_concepts AS SELECT * FROM ${stats_db_name}.software_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_datasources AS SELECT * FROM ${stats_db_name}.software_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_languages AS SELECT * FROM ${stats_db_name}.software_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_licenses AS SELECT * FROM ${stats_db_name}.software_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_oids AS SELECT * FROM ${stats_db_name}.software_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_pids AS SELECT * FROM ${stats_db_name}.software_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_refereed AS SELECT * FROM ${stats_db_name}.software_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_sources AS SELECT * FROM ${stats_db_name}.software_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_topics AS SELECT * FROM ${stats_db_name}.software_topics;

245
dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml
View File

@ -4,10 +4,6 @@
<name>stats_db_name</name> <name>stats_db_name</name>
<description>the target stats database name</description> <description>the target stats database name</description>
</property> </property>
<property>
<name>stats_db_shadow_name</name>
<description>the name of the shadow schema</description>
</property>
<property> <property>
<name>stats_db_production_name</name> <name>stats_db_production_name</name>
<description>the name of the production schema</description> <description>the name of the production schema</description>
@ -41,262 +37,47 @@
</configuration> </configuration>
</global> </global>
<start to="Step1"/> <start to="updateProductionViews"/>
<kill name="Kill"> <kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message> <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill> </kill>
<action name="Step1"> <action name="updateProductionViews">
<hive2 xmlns="uri:oozie:hive2-action:0.1"> <hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url> <jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step1.sql</script> <script>scripts/updateProductionViews.sql</script>
<param>stats_db_name=${stats_db_name}</param> <param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param> <param>stats_db_production_name=${stats_db_production_name}</param>
</hive2> </hive2>
<ok to="Step2"/> <ok to="computeProductionStats"/>
<error to="Kill"/> <error to="Kill"/>
</action> </action>
<action name="Step2"> <action name="computeProductionStats">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step2.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step3"/>
<error to="Kill"/>
</action>
<action name="Step3">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step3.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step4"/>
<error to="Kill"/>
</action>
<action name="Step4">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step4.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step5"/>
<error to="Kill"/>
</action>
<action name="Step5">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step5.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step6"/>
<error to="Kill"/>
</action>
<action name="Step6">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step6.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step7"/>
<error to="Kill"/>
</action>
<action name="Step7">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step7.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step8"/>
<error to="Kill"/>
</action>
<action name="Step8">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step8.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step9"/>
<error to="Kill"/>
</action>
<action name="Step9">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step9.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step10"/>
<error to="Kill"/>
</action>
<action name="Step10">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step10.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
<param>external_stats_db_name=${external_stats_db_name}</param>
</hive2>
<ok to="Step11"/>
<error to="Kill"/>
</action>
<action name="Step11">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step11.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
<param>external_stats_db_name=${external_stats_db_name}</param>
</hive2>
<ok to="Step12"/>
<error to="Kill"/>
</action>
<action name="Step12">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step12.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step13"/>
<error to="Kill"/>
</action>
<action name="Step13">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step13.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step14"/>
<error to="Kill"/>
</action>
<action name="Step14">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step14.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step15"/>
<error to="Kill"/>
</action>
<action name="Step15">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step15.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step16"/>
<error to="Kill"/>
</action>
<action name="Step16">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step16.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step16_5"/>
<error to="Kill"/>
</action>
<action name="Step16_5">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step16_5.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step16_6"/>
<error to="Kill"/>
</action>
<action name="Step16_6">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step16_6.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step17"/>
<error to="Kill"/>
</action>
<action name="Step17">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step17.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>stats_db_shadow_name=${stats_db_shadow_name}</param>
</hive2>
<ok to="Step18"/>
<error to="Kill"/>
</action>
<action name="Step18">
<shell xmlns="uri:oozie:shell-action:0.1"> <shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker> <job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node> <name-node>${nameNode}</name-node>
<exec>impala-shell.sh</exec> <exec>impala-shell.sh</exec>
<argument>${stats_db_name}</argument> <argument>${stats_db_production_name}</argument>
<argument>step18.sql</argument> <argument>computeProductionStats.sql</argument>
<argument>${wf:appPath()}/scripts/step18.sql</argument> <argument>${wf:appPath()}/scripts/computeProductionStats.sql</argument>
<file>impala-shell.sh</file> <file>impala-shell.sh</file>
</shell> </shell>
<ok to="Step19"/> <ok to="promoteCache"/>
<error to="Kill"/> <error to="Kill"/>
</action> </action>
<action name="Step19"> <action name="promoteCache">
<shell xmlns="uri:oozie:shell-action:0.1"> <shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker> <job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node> <name-node>${nameNode}</name-node>
<exec>impala-shell.sh</exec> <exec>promoteCache.sh</exec>
<argument>${stats_db_shadow_name}</argument>
<argument>step19.sql</argument>
<argument>${wf:appPath()}/scripts/step19.sql</argument>
<file>impala-shell.sh</file>
</shell>
<ok to="Step20"/>
<error to="Kill"/>
</action>
<action name="Step20">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>updateCache.sh</exec>
<argument>${stats_tool_api_url}</argument> <argument>${stats_tool_api_url}</argument>
<file>updateCache.sh</file> <file>promoteCache.sh</file>
</shell> </shell>
<ok to="End"/> <ok to="End"/>
<error to="Kill"/> <error to="Kill"/>
</action> </action>
<end name="End"/> <end name="End"/>
</workflow-app> </workflow-app>

6
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml
View File

@ -255,7 +255,7 @@
<action name="Step17"> <action name="Step17">
<hive2 xmlns="uri:oozie:hive2-action:0.1"> <hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url> <jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step17.sql</script> <script>scripts/updateProductionViews.sql</script>
<param>stats_db_name=${stats_db_name}</param> <param>stats_db_name=${stats_db_name}</param>
<param>stats_db_shadow_name=${stats_db_shadow_name}</param> <param>stats_db_shadow_name=${stats_db_shadow_name}</param>
</hive2> </hive2>
@ -283,8 +283,8 @@
<name-node>${nameNode}</name-node> <name-node>${nameNode}</name-node>
<exec>impala-shell.sh</exec> <exec>impala-shell.sh</exec>
<argument>${stats_db_shadow_name}</argument> <argument>${stats_db_shadow_name}</argument>
<argument>step19.sql</argument> <argument>computeProductionStats.sql</argument>
<argument>${wf:appPath()}/scripts/step19.sql</argument> <argument>${wf:appPath()}/scripts/computeProductionStats.sql</argument>
<file>impala-shell.sh</file> <file>impala-shell.sh</file>
</shell> </shell>
<ok to="Step20"/> <ok to="Step20"/>