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Merge pull request 'Latest institutions in monitor dbs' (#472) from antonis.lempesis/dnet-hadoop:beta into beta 

Reviewed-on: D-Net/dnet-hadoop#472
This commit is contained in:
Claudio Atzori 2024-09-26 09:49:01 +02:00
parent 599e56dbc6 619aa34a15
commit 3fcafc7ed6
33 changed files with 1119 additions and 1069 deletions
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8
dhp-common/src/main/java/eu/dnetlib/dhp/oozie/RunSQLSparkJob.java
View File

@ -65,7 +65,13 @@ public class RunSQLSparkJob {
for (String statement : sql.split(";\\s*/\\*\\s*EOS\\s*\\*/\\s*")) {
log.info("executing: {}", statement);
long startTime = System.currentTimeMillis();
spark.sql(statement).show();
try {
spark.sql(statement).show();
} catch (Exception e) {
log.error("Error executing statement: {}", statement, e);
System.err.println("Error executing statement: " + statement + "\n" + e);
throw e;
}
log
.info(
"executed in {}",

76
dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDB.sql
View File

@ -1,79 +1,3 @@
--drop database if exists TARGET cascade;
--create database if not exists TARGET;
--
--create view if not exists TARGET.category as select * from SOURCE.category;
--create view if not exists TARGET.concept as select * from SOURCE.concept;
--create view if not exists TARGET.context as select * from SOURCE.context;
--create view if not exists TARGET.country as select * from SOURCE.country;
--create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
--create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
--create view if not exists TARGET.funder as select * from SOURCE.funder;
--create view if not exists TARGET.fundref as select * from SOURCE.fundref;
--create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
--create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure;
--create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents;
--create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
--create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
--create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
--
--create table TARGET.result stored as parquet as
-- select distinct * from (
-- select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on rp.project=p.id where rp.id=r.id)
-- union all
-- select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id)
-- union all
-- select * from SOURCE.result r where exists (select 1 from SOURCE.result_organization ro where ro.id=r.id and ro.organization in (
-- 'openorgs____::b84450f9864182c67b8611b5593f4250', --"Athena Research and Innovation Center In Information Communication & Knowledge Technologies', --ARC"
-- 'openorgs____::d41cf6bd4ab1b1362a44397e0b95c975', --National Research Council
-- 'openorgs____::d2a09b9d5eabb10c95f9470e172d05d2', --??? Not exists ??
-- 'openorgs____::d169c7407dd417152596908d48c11460', --Masaryk University
-- 'openorgs____::1ec924b1759bb16d0a02f2dad8689b21', --University of Belgrade
-- 'openorgs____::0ae431b820e4c33db8967fbb2b919150', --University of Helsinki
-- 'openorgs____::759d59f05d77188faee99b7493b46805', --University of Minho
-- 'openorgs____::cad284878801b9465fa51a95b1d779db', --Universidad Politécnica de Madrid
-- 'openorgs____::eadc8da90a546e98c03f896661a2e4d4', --University of Göttingen
-- 'openorgs____::c0286313e36479eff8676dba9b724b40', --National and Kapodistrian University of Athens
-- -- 'openorgs____::c80a8243a5e5c620d7931c88d93bf17a', --Université Paris Diderot
-- 'openorgs____::c08634f0a6b0081c3dc6e6c93a4314f3', --Bielefeld University
-- 'openorgs____::6fc85e4a8f7ecaf4b0c738d010e967ea', --University of Southern Denmark
-- 'openorgs____::3d6122f87f9a97a99d8f6e3d73313720', --Humboldt-Universität zu Berlin
-- 'openorgs____::16720ada63d0fa8ca41601feae7d1aa5', --TU Darmstadt
-- 'openorgs____::ccc0a066b56d2cfaf90c2ae369df16f5', --KU Leuven
-- 'openorgs____::4c6f119632adf789746f0a057ed73e90', --University of the Western Cape
-- 'openorgs____::ec3665affa01aeafa28b7852c4176dbd', --Rudjer Boskovic Institute
-- 'openorgs____::5f31346d444a7f06a28c880fb170b0f6', --Ghent University
-- 'openorgs____::2dbe47117fd5409f9c61620813456632', --University of Luxembourg
-- 'openorgs____::6445d7758d3a40c4d997953b6632a368', --National Institute of Informatics (NII)
-- 'openorgs____::b77c01aa15de3675da34277d48de2ec1', -- Valencia Catholic University Saint Vincent Martyr
-- 'openorgs____::7fe2f66cdc43983c6b24816bfe9cf6a0', -- Unviersity of Warsaw
-- 'openorgs____::15e7921fc50d9aa1229a82a84429419e', -- University Of Thessaly
-- 'openorgs____::11f7919dadc8f8a7251af54bba60c956', -- Technical University of Crete
-- 'openorgs____::84f0c5f5dbb6daf42748485924efde4b', -- University of Piraeus
-- 'openorgs____::4ac562f0376fce3539504567649cb373', -- University of Patras
-- 'openorgs____::3e8d1f8c3f6cd7f418b09f1f58b4873b', -- Aristotle University of Thessaloniki
-- 'openorgs____::3fcef6e1c469c10f2a84b281372c9814', -- World Bank
-- 'openorgs____::1698a2eb1885ef8adb5a4a969e745ad3', -- École des Ponts ParisTech
-- 'openorgs____::e15adb13c4dadd49de4d35c39b5da93a', -- Nanyang Technological University
-- 'openorgs____::4b34103bde246228fcd837f5f1bf4212', -- Autonomous University of Barcelona
-- 'openorgs____::72ec75fcfc4e0df1a76dc4c49007fceb', -- McMaster University
-- 'openorgs____::51c7fc556e46381734a25a6fbc3fd398', -- University of Modena and Reggio Emilia
-- 'openorgs____::235d7f9ad18ecd7e6dc62ea4990cb9db', -- Bilkent University
-- 'openorgs____::31f2fa9e05b49d4cf40a19c3fed8eb06', -- Saints Cyril and Methodius University of Skopje
-- 'openorgs____::db7686f30f22cbe73a4fde872ce812a6', -- University of Milan
-- 'openorgs____::b8b8ca674452579f3f593d9f5e557483', -- University College Cork
-- 'openorgs____::38d7097854736583dde879d12dacafca' -- Brown University
-- 'openorgs____::57784c9e047e826fefdb1ef816120d92', --Arts et Métiers ParisTech
-- 'openorgs____::2530baca8a15936ba2e3297f2bce2e7e', -- University of Cape Town
-- 'openorgs____::d11f981828c485cd23d93f7f24f24db1', -- Technological University Dublin
-- 'openorgs____::5e6bf8962665cdd040341171e5c631d8', -- Delft University of Technology
-- 'openorgs____::846cb428d3f52a445f7275561a7beb5d', -- University of Manitoba
-- 'openorgs____::eb391317ed0dc684aa81ac16265de041', -- Universitat Rovira i Virgili
-- 'openorgs____::66aa9fc2fceb271423dfabcc38752dc0', -- Lund University
-- 'openorgs____::3cff625a4370d51e08624cc586138b2f' -- IMT Atlantique
-- ) )) foo;
--
--ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
create view if not exists TARGET.category as select * from SOURCE.category;
create view if not exists TARGET.concept as select * from SOURCE.concept;
create view if not exists TARGET.context as select * from SOURCE.context;

12
dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDBAll.sql
View File

@ -81,7 +81,17 @@ create table TARGET.result stored as parquet as
'openorgs____::8839b55dae0c84d56fd533f52d5d483a', -- Leibniz Institute of Ecological Urban and Regional Development
'openorgs____::526468206bca24c1c90da6a312295cf4', -- Cyprus University of Technology
'openorgs____::b5ca9d4340e26454e367e2908ef3872f', -- Alma Mater Studiorum University of Bologna
'openorgs____::a6340e6ecf60f6bba163659df985b0f2' -- TU Dresden
'openorgs____::a6340e6ecf60f6bba163659df985b0f2', -- TU Dresden
'openorgs____::64badd35233ba2cd4946368ef2f4cf57', -- University of Vienna
'openorgs____::7501d66d2297a963ebfb075c43fff88e', -- Royal Institute of Technology
'openorgs____::d5eb679abdd31f70fcd4c8ba711148bf', -- Sorbonne University
'openorgs____::b316f25380d106aac402f5ae8653910d', -- Centre for Research on Ecology and Forestry Applications
'openorgs____::45a2076eee3013e0e85625ce61bcd272', -- Institut d'Investigació Sanitària Illes Balears
'openorgs____::00b20b0a743a96169e6cf135e6e2bd7c', -- Universidad Publica De Navarra
'openorgs____::0f398605c2459294d125ff23473a97dc', -- Aalto University
'openorgs____::25b1fa62c7fd8e409d3a83c07e04b2d4', -- WHU-Otto Beisheim School of Management
'openorgs____::d6eec313417f11205db4e736a34c0db6', -- KEMPELENOV INSTITUT INTELIGENTNYCH TECHNOLOGII
'openorgs____::c2dfb90e797a2dc52f0084c549289d0c' -- National Research Institute for Agriculture, Food and Environment
))) foo;
--ANALYZE TABLE TARGET.result COMPUTE STATISTICS;

12
dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDB_institutions.sql
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@ -61,7 +61,17 @@ create table TARGET.result stored as parquet as
'openorgs____::8839b55dae0c84d56fd533f52d5d483a', -- Leibniz Institute of Ecological Urban and Regional Development
'openorgs____::526468206bca24c1c90da6a312295cf4', -- Cyprus University of Technology
'openorgs____::b5ca9d4340e26454e367e2908ef3872f', -- Alma Mater Studiorum University of Bologna
'openorgs____::a6340e6ecf60f6bba163659df985b0f2' -- TU Dresden
'openorgs____::a6340e6ecf60f6bba163659df985b0f2', -- TU Dresden
'openorgs____::64badd35233ba2cd4946368ef2f4cf57', -- University of Vienna
'openorgs____::7501d66d2297a963ebfb075c43fff88e', -- Royal Institute of Technology
'openorgs____::d5eb679abdd31f70fcd4c8ba711148bf', -- Sorbonne University
'openorgs____::b316f25380d106aac402f5ae8653910d', -- Centre for Research on Ecology and Forestry Applications
'openorgs____::45a2076eee3013e0e85625ce61bcd272', -- Institut d'Investigació Sanitària Illes Balears
'openorgs____::00b20b0a743a96169e6cf135e6e2bd7c', -- Universidad Publica De Navarra
'openorgs____::0f398605c2459294d125ff23473a97dc', -- Aalto University
'openorgs____::25b1fa62c7fd8e409d3a83c07e04b2d4', -- WHU-Otto Beisheim School of Management
'openorgs____::d6eec313417f11205db4e736a34c0db6', -- KEMPELENOV INSTITUT INTELIGENTNYCH TECHNOLOGII
'openorgs____::c2dfb90e797a2dc52f0084c549289d0c' -- National Research Institute for Agriculture, Food and Environment
))) foo;
--ANALYZE TABLE TARGET.result COMPUTE STATISTICS;

18
dhp-workflows/dhp-stats-update/installProject.sh Executable file
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@ -0,0 +1,18 @@
# Install the whole "dnet-hadoop" project.
# Delete this module's previous build-files in order to avoid any conflicts.
rm -rf target/ ||
# Go to the root directory of this project.
cd ../../
# Select the build profile.
DEFAULT_PROFILE='' # It's the empty profile.
NEWER_VERSIONS_PROFILE='-Pscala-2.12'
CHOSEN_MAVEN_PROFILE=${DEFAULT_PROFILE}
# Install the project.
mvn clean install -U ${CHOSEN_MAVEN_PROFILE} -Dmaven.test.skip=true
# We skip tests for all modules, since the take a big amount of time and some of them fail.
# Any test added to this module, will be executed in the "runOozieWorkflow.sh" script.

20
dhp-workflows/dhp-stats-update/runOozieWorkfow.sh Executable file
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@ -0,0 +1,20 @@
# This script deploys and runs the oozie workflow on the cluster, defined in the "~/.dhp/application.properties" file.
# Select the build profile.
DEFAULT_PROFILE='' # It's the empty profile.
NEWER_VERSIONS_PROFILE='-Pscala-2.12'
CHOSEN_MAVEN_PROFILE=${DEFAULT_PROFILE}
# Build and deploy this module.
mvn clean package -U ${CHOSEN_MAVEN_PROFILE} -Poozie-package,deploy,run \
-Dworkflow.source.dir=eu/dnetlib/dhp/oa/graph/stats
# Show the Oozie-job-ID.
echo -e "\n\nShowing the contents of \"extract-and-run-on-remote-host.log\":\n"
cat ./target/extract-and-run-on-remote-host.log
# Check oozie workflow status
# oozie job -oozie http://iis-cdh5-test-m3:11000/oozie -info <workflow-ID>
# Get the <job-ID> from the previous output and check the logs:
# yarn logs -applicationId application_<job-ID>

6
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step1.sql
View File

@ -1,8 +1,10 @@
set mapred.job.queue.name=analytics; /*EOS*/
--------------------------------------------------------------
--------------------------------------------------------------
-- Stats database creation
--------------------------------------------------------------
--------------------------------------------------------------
DROP database IF EXISTS ${stats_db_name} CASCADE;
CREATE database ${stats_db_name};
DROP database IF EXISTS ${stats_db_name} CASCADE; /*EOS*/
CREATE database ${stats_db_name}; /*EOS*/

26
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql
View File

@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics; /*EOS*/
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
-- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture)
@ -5,27 +7,27 @@
------------------------------------------------------------------------------------------------
CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS
SELECT *
FROM ${external_stats_db_name}.fundref;
FROM ${external_stats_db_name}.fundref; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.country AS
SELECT *
FROM ${external_stats_db_name}.country;
FROM ${external_stats_db_name}.country; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS
SELECT *
FROM ${external_stats_db_name}.countrygdp;
FROM ${external_stats_db_name}.countrygdp; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS
SELECT *
FROM ${external_stats_db_name}.roarmap;
FROM ${external_stats_db_name}.roarmap; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS
SELECT *
FROM ${external_stats_db_name}.rndexpediture;
FROM ${external_stats_db_name}.rndexpediture; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.licenses_normalized AS
SELECT *
FROM ${external_stats_db_name}.licenses_normalized;
FROM ${external_stats_db_name}.licenses_normalized; /*EOS*/
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
@ -33,23 +35,23 @@ FROM ${external_stats_db_name}.licenses_normalized;
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
create or replace view ${stats_db_name}.usage_stats as
select * from openaire_prod_usage_stats.usage_stats;
select * from openaire_prod_usage_stats.usage_stats; /*EOS*/
create or replace view ${stats_db_name}.downloads_stats as
select * from openaire_prod_usage_stats.downloads_stats;
select * from openaire_prod_usage_stats.downloads_stats; /*EOS*/
create or replace view ${stats_db_name}.pageviews_stats as
select * from openaire_prod_usage_stats.pageviews_stats;
select * from openaire_prod_usage_stats.pageviews_stats; /*EOS*/
create or replace view ${stats_db_name}.views_stats as
select * from openaire_prod_usage_stats.views_stats;
select * from openaire_prod_usage_stats.views_stats; /*EOS*/
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
-- Creation date of the database
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.creation_date purge;
DROP TABLE IF EXISTS ${stats_db_name}.creation_date purge; /*EOS*/
create table ${stats_db_name}.creation_date STORED AS PARQUET as
select date_format(current_date(), 'dd-MM-yyyy') as date;
select date_format(current_date(), 'dd-MM-yyyy') as date; /*EOS*/

105
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step11.sql
View File

@ -1,110 +1,11 @@
set mapred.job.queue.name=analytics; /*EOS*/
----------------------------------------------------------------
----------------------------------------------------------------
-- Post processing - Updates on main tables
----------------------------------------------------------------
----------------------------------------------------------------
--Datasource temporary table updates
UPDATE ${stats_db_name}.datasource_tmp
SET harvested='true'
WHERE datasource_tmp.id IN (SELECT DISTINCT d.id
FROM ${stats_db_name}.datasource_tmp d,
${stats_db_name}.result_datasources rd
WHERE d.id = rd.datasource);
-- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
UPDATE ${stats_db_name}.project_tmp
SET haspubs='yes'
WHERE project_tmp.id IN (SELECT pr.id
FROM ${stats_db_name}.project_results pr,
${stats_db_name}.result r
WHERE pr.result = r.id
AND r.type = 'publication');
DROP TABLE IF EXISTS ${stats_db_name}.stored purge;
CREATE TABLE ${stats_db_name}.project stored as parquet as
SELECT p.id,
p.acronym,
p.title,
p.funder,
p.funding_lvl0,
p.funding_lvl1,
p.funding_lvl2,
p.ec39,
p.type,
p.startdate,
p.enddate,
p.start_year,
p.end_year,
p.duration,
CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs,
CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
p.callidentifier,
p.code,
p.totalcost,
p.fundedamount,
p.currency
FROM ${stats_db_name}.project_tmp p
LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
FROM ${stats_db_name}.project_results pr
INNER JOIN ${stats_db_name}.result r ON pr.result = r.id
WHERE r.type = 'publication'
GROUP BY pr.id) AS prr1 on prr1.id = p.id
LEFT JOIN (SELECT pp.id,
max(datediff(to_date(r.date), to_date(pp.enddate))) AS daysForlastPub,
count(distinct r.id) AS dp
FROM ${stats_db_name}.project_tmp pp,
${stats_db_name}.project_results pr,
${stats_db_name}.result r
WHERE pp.id = pr.id
AND pr.result = r.id
AND r.type = 'publication'
AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
GROUP BY pp.id) AS prr2
ON prr2.id = p.id;
UPDATE ${stats_db_name}.publication_tmp
SET delayed = 'yes'
WHERE publication_tmp.id IN (SELECT distinct r.id
FROM ${stats_db_name}.result r,
${stats_db_name}.project_results pr,
${stats_db_name}.project_tmp p
WHERE r.id = pr.result
AND pr.id = p.id
AND to_date(r.date) - to_date(p.enddate) > 0);
UPDATE ${stats_db_name}.dataset_tmp
SET delayed = 'yes'
WHERE dataset_tmp.id IN (SELECT distinct r.id
FROM ${stats_db_name}.result r,
${stats_db_name}.project_results pr,
${stats_db_name}.project_tmp p
WHERE r.id = pr.result
AND pr.id = p.id
AND to_date(r.date) - to_date(p.enddate) > 0);
UPDATE ${stats_db_name}.software_tmp
SET delayed = 'yes'
WHERE software_tmp.id IN (SELECT distinct r.id
FROM ${stats_db_name}.result r,
${stats_db_name}.project_results pr,
${stats_db_name}.project_tmp p
WHERE r.id = pr.result
AND pr.id = p.id
AND to_date(r.date) - to_date(p.enddate) > 0);
UPDATE ${stats_db_name}.otherresearchproduct_tmp
SET delayed = 'yes'
WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id
FROM ${stats_db_name}.result r,
${stats_db_name}.project_results pr,
${stats_db_name}.project_tmp p
WHERE r.id = pr.result
AND pr.id = p.id
AND to_date(r.date) - to_date(p.enddate) > 0);
CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS
SELECT result_projects.id AS result,
result_projects.project AS project_results,
@ -116,4 +17,4 @@ FROM ${stats_db_name}.result_projects,
${stats_db_name}.project
WHERE result_projects.id = result.id
AND result.type = 'publication'
AND project.id = result_projects.project;
AND project.id = result_projects.project; /*EOS*/

42
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12.sql
View File

@ -1,42 +1,4 @@
------------------------------------------------------------------------------------------------------
-- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables
------------------------------------------------------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.datasource purge;
CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS
SELECT *
FROM ${stats_db_name}.datasource_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.publication purge;
CREATE TABLE ${stats_db_name}.publication stored AS parquet AS
SELECT *
FROM ${stats_db_name}.publication_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.dataset purge;
CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS
SELECT *
FROM ${stats_db_name}.dataset_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.software purge;
CREATE TABLE ${stats_db_name}.software stored AS parquet AS
SELECT *
FROM ${stats_db_name}.software_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct purge;
CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS
SELECT *
FROM ${stats_db_name}.otherresearchproduct_tmp;
DROP TABLE ${stats_db_name}.project_tmp;
DROP TABLE ${stats_db_name}.datasource_tmp;
DROP TABLE ${stats_db_name}.publication_tmp;
DROP TABLE ${stats_db_name}.dataset_tmp;
DROP TABLE ${stats_db_name}.software_tmp;
DROP TABLE ${stats_db_name}.otherresearchproduct_tmp;
set mapred.job.queue.name=analytics; /*EOS*/
----------------------------------------------
-- Re-creating views from final parquet tables
@ -54,4 +16,4 @@ SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.dataset
UNION ALL
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.otherresearchproduct;
FROM ${stats_db_name}.otherresearchproduct; /*EOS*/

52
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql
View File

@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics; /*EOS*/
------------------------------------------------------
------------------------------------------------------
-- Additional relations
@ -5,10 +7,10 @@
-- Sources related tables/views
------------------------------------------------------
------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.publication_sources purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_sources purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_sources STORED AS PARQUET as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
SELECT /*+ COALESCE(100) */ p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.publication p lateral view explode(p.collectedfrom.key) c as datasource) p
@ -16,12 +18,12 @@ LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false and d.datainfo.invisible = FALSE) d on p.datasource = d.id;
WHERE d.datainfo.deletedbyinference=false and d.datainfo.invisible = FALSE) d on p.datasource = d.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.dataset_sources purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_sources purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_sources STORED AS PARQUET as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
SELECT /*+ COALESCE(100) */ p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.dataset p lateral view explode(p.collectedfrom.key) c as datasource) p
@ -29,12 +31,12 @@ LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false and d.datainfo.invisible = FALSE) d on p.datasource = d.id;
WHERE d.datainfo.deletedbyinference=false and d.datainfo.invisible = FALSE) d on p.datasource = d.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.software_sources purge;
DROP TABLE IF EXISTS ${stats_db_name}.software_sources purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_sources STORED AS PARQUET as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
SELECT /*+ COALESCE(100) */ p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.software p lateral view explode(p.collectedfrom.key) c as datasource) p
@ -42,12 +44,12 @@ LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false and d.datainfo.invisible = FALSE) d on p.datasource = d.id;
WHERE d.datainfo.deletedbyinference=false and d.datainfo.invisible = FALSE) d on p.datasource = d.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_sources purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_sources purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_sources STORED AS PARQUET as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
SELECT /*+ COALESCE(100) */ p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.collectedfrom.key) c as datasource) p
@ -55,7 +57,7 @@ LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false and d.datainfo.invisible = FALSE) d on p.datasource = d.id;
WHERE d.datainfo.deletedbyinference=false and d.datainfo.invisible = FALSE) d on p.datasource = d.id; /*EOS*/
CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_sources AS
SELECT * FROM ${stats_db_name}.publication_sources
@ -64,24 +66,24 @@ SELECT * FROM ${stats_db_name}.dataset_sources
UNION ALL
SELECT * FROM ${stats_db_name}.software_sources
UNION ALL
SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
SELECT * FROM ${stats_db_name}.otherresearchproduct_sources; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_orcid purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_orcid purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.result_orcid STORED AS PARQUET as
select distinct res.id, upper(regexp_replace(res.orcid, 'http://orcid.org/' ,'')) as orcid
select /*+ COALESCE(100) */ distinct res.id, upper(regexp_replace(res.orcid, 'http://orcid.org/' ,'')) as orcid
from (
SELECT substr(res.id, 4) as id, auth_pid.value as orcid
FROM ${openaire_db_name}.result res
LATERAL VIEW explode(author) a as auth
LATERAL VIEW explode(auth.pid) ap as auth_pid
LATERAL VIEW explode(auth.pid.qualifier.classid) apt as author_pid_type
WHERE res.datainfo.deletedbyinference = FALSE and res.datainfo.invisible = FALSE and author_pid_type = 'orcid') as res;
WHERE res.datainfo.deletedbyinference = FALSE and res.datainfo.invisible = FALSE and author_pid_type = 'orcid') as res; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_result purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_result purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.result_result stored as parquet as
select substr(rel.source, 4) as source, substr(rel.target, 4) as target, relclass, subreltype
select /*+ COALESCE(100) */ substr(rel.source, 4) as source, substr(rel.target, 4) as target, relclass, subreltype
from ${openaire_db_name}.relation rel
join ${openaire_db_name}.result r1 on rel.source=r1.id
join ${openaire_db_name}.result r2 on r2.id=rel.target
@ -91,12 +93,12 @@ where reltype='resultResult'
and r2.datainfo.deletedbyinference=false and r2.datainfo.invisible = FALSE
and r1.resulttype.classname != 'other'
and r2.resulttype.classname != 'other'
and rel.datainfo.deletedbyinference=false and rel.datainfo.invisible = FALSE;
and rel.datainfo.deletedbyinference=false and rel.datainfo.invisible = FALSE; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_citations_oc purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_citations_oc purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.result_citations_oc stored as parquet as
select substr(target, 4) as id, count(distinct substr(source, 4)) as citations
select /*+ COALESCE(100) */ substr(target, 4) as id, count(distinct substr(source, 4)) as citations
from ${openaire_db_name}.relation rel
join ${openaire_db_name}.result r1 on rel.source=r1.id
join ${openaire_db_name}.result r2 on r2.id=rel.target
@ -108,12 +110,12 @@ where relClass='Cites' and rel.datainfo.provenanceaction.classid = 'sysimport:cr
and r1.resulttype.classname != 'other'
and r2.resulttype.classname != 'other'
and rel.datainfo.deletedbyinference=false and rel.datainfo.invisible = FALSE
group by substr(target, 4);
group by substr(target, 4); /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_references_oc purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_references_oc purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.result_references_oc stored as parquet as
select substr(source, 4) as id, count(distinct substr(target, 4)) as references
select /*+ COALESCE(100) */ substr(source, 4) as id, count(distinct substr(target, 4)) as references
from ${openaire_db_name}.relation rel
join ${openaire_db_name}.result r1 on rel.source=r1.id
join ${openaire_db_name}.result r2 on r2.id=rel.target
@ -125,4 +127,4 @@ where relClass='Cites' and rel.datainfo.provenanceaction.classid = 'sysimport:cr
and r1.resulttype.classname != 'other'
and r2.resulttype.classname != 'other'
and rel.datainfo.deletedbyinference=false and rel.datainfo.invisible = FALSE
group by substr(source, 4);
group by substr(source, 4); /*EOS*/

49
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql
View File

@ -1,4 +1,5 @@
set mapred.job.queue.name=analytics;
set mapred.job.queue.name=analytics; /*EOS*/
------------------------------------------------------
------------------------------------------------------
-- Additional relations
@ -6,33 +7,33 @@ set mapred.job.queue.name=analytics;
-- Licences related tables/views
------------------------------------------------------
------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.publication_licenses purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_licenses purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_licenses STORED AS PARQUET AS
SELECT substr(p.id, 4) as id, licenses.value as type
SELECT /*+ COALESCE(100) */ substr(p.id, 4) as id, licenses.value as type
from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.license) instances as licenses
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false and p.datainfo.invisible = FALSE;
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false and p.datainfo.invisible = FALSE; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.dataset_licenses purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_licenses purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_licenses STORED AS PARQUET AS
SELECT substr(p.id, 4) as id, licenses.value as type
SELECT /*+ COALESCE(100) */ substr(p.id, 4) as id, licenses.value as type
from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.license) instances as licenses
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false and p.datainfo.invisible = FALSE;
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false and p.datainfo.invisible = FALSE; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.software_licenses purge;
DROP TABLE IF EXISTS ${stats_db_name}.software_licenses purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_licenses STORED AS PARQUET AS
SELECT substr(p.id, 4) as id, licenses.value as type
SELECT /*+ COALESCE(100) */ substr(p.id, 4) as id, licenses.value as type
from ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.license) instances as licenses
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false and p.datainfo.invisible = FALSE;
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false and p.datainfo.invisible = FALSE; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_licenses purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_licenses purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_licenses STORED AS PARQUET AS
SELECT substr(p.id, 4) as id, licenses.value as type
SELECT /*+ COALESCE(100) */ substr(p.id, 4) as id, licenses.value as type
from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.license) instances as licenses
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false and p.datainfo.invisible = FALSE;
where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false and p.datainfo.invisible = FALSE; /*EOS*/
CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_licenses AS
SELECT * FROM ${stats_db_name}.publication_licenses
@ -41,29 +42,29 @@ SELECT * FROM ${stats_db_name}.dataset_licenses
UNION ALL
SELECT * FROM ${stats_db_name}.software_licenses
UNION ALL
SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.organization_pids purge;
DROP TABLE IF EXISTS ${stats_db_name}.organization_pids purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization_pids STORED AS PARQUET AS
select substr(o.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid
from ${openaire_db_name}.organization o lateral view explode(o.pid) pids as ppid;
select /*+ COALESCE(100) */ substr(o.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid
from ${openaire_db_name}.organization o lateral view explode(o.pid) pids as ppid; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.organization_sources purge;
DROP TABLE IF EXISTS ${stats_db_name}.organization_sources purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization_sources STORED AS PARQUET as
SELECT o.id, case when d.id is null then 'other' else o.datasource end as datasource
SELECT /*+ COALESCE(100) */ o.id, case when d.id is null then 'other' else o.datasource end as datasource
FROM (
SELECT substr(o.id, 4) as id, substr(instances.instance.key, 4) as datasource
SELECT substr(o.id, 4) as id, substr(instances.instance.key, 4) as datasource
from ${openaire_db_name}.organization o lateral view explode(o.collectedfrom) instances as instance) o
LEFT OUTER JOIN (
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false and d.datainfo.invisible = FALSE) d on o.datasource = d.id;
WHERE d.datainfo.deletedbyinference=false and d.datainfo.invisible = FALSE) d on o.datasource = d.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_accessroute purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_accessroute purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.result_accessroute STORED AS PARQUET as
select distinct substr(id,4) as id, accessroute from ${openaire_db_name}.result
select /*+ COALESCE(100) */ distinct substr(id,4) as id, accessroute from ${openaire_db_name}.result
lateral view explode (instance.accessright.openaccessroute) openaccessroute as accessroute
WHERE datainfo.deletedbyinference=false and datainfo.invisible = FALSE;
WHERE datainfo.deletedbyinference=false and datainfo.invisible = FALSE; /*EOS*/

40
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql
View File

@ -1,4 +1,4 @@
set mapred.job.queue.name=analytics;
set mapred.job.queue.name=analytics; /*EOS*/
------------------------------------------------------
------------------------------------------------------
@ -8,7 +8,7 @@ set mapred.job.queue.name=analytics;
------------------------------------------------------
------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.publication_refereed purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_refereed purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_refereed STORED AS PARQUET as
with peer_reviewed as (
select distinct substr(r.id, 4) as id, inst.refereed.classname as refereed
@ -18,15 +18,15 @@ non_peer_reviewed as (
select distinct substr(r.id, 4) as id, inst.refereed.classname as refereed
from ${openaire_db_name}.publication r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false and r.datainfo.invisible = FALSE and inst.refereed.classname='nonPeerReviewed')
select distinct *
select /*+ COALESCE(100) */ distinct *
from (
select peer_reviewed.* from peer_reviewed
union all
select non_peer_reviewed.* from non_peer_reviewed
left join peer_reviewed on peer_reviewed.id=non_peer_reviewed.id
where peer_reviewed.id is null) pr;
where peer_reviewed.id is null) pr; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.dataset_refereed purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_refereed purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_refereed STORED AS PARQUET as
with peer_reviewed as (
select distinct substr(r.id, 4) as id, inst.refereed.classname as refereed
@ -36,15 +36,15 @@ non_peer_reviewed as (
select distinct substr(r.id, 4) as id, inst.refereed.classname as refereed
from ${openaire_db_name}.dataset r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false and r.datainfo.invisible = FALSE and inst.refereed.classname='nonPeerReviewed')
select distinct *
select /*+ COALESCE(100) */ distinct *
from (
select peer_reviewed.* from peer_reviewed
union all
select non_peer_reviewed.* from non_peer_reviewed
left join peer_reviewed on peer_reviewed.id=non_peer_reviewed.id
where peer_reviewed.id is null) pr;
where peer_reviewed.id is null) pr; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.software_refereed purge;
DROP TABLE IF EXISTS ${stats_db_name}.software_refereed purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_refereed STORED AS PARQUET as
with peer_reviewed as (
select distinct substr(r.id, 4) as id, inst.refereed.classname as refereed
@ -54,15 +54,15 @@ non_peer_reviewed as (
select distinct substr(r.id, 4) as id, inst.refereed.classname as refereed
from ${openaire_db_name}.software r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false and r.datainfo.invisible = FALSE and inst.refereed.classname='nonPeerReviewed')
select distinct *
select /*+ COALESCE(100) */ distinct *
from (
select peer_reviewed.* from peer_reviewed
union all
select non_peer_reviewed.* from non_peer_reviewed
left join peer_reviewed on peer_reviewed.id=non_peer_reviewed.id
where peer_reviewed.id is null) pr;
where peer_reviewed.id is null) pr; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_refereed purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_refereed purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_refereed STORED AS PARQUET as
with peer_reviewed as (
select distinct substr(r.id, 4) as id, inst.refereed.classname as refereed
@ -72,13 +72,13 @@ non_peer_reviewed as (
select distinct substr(r.id, 4) as id, inst.refereed.classname as refereed
from ${openaire_db_name}.otherresearchproduct r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false and r.datainfo.invisible = FALSE and inst.refereed.classname='nonPeerReviewed')
select distinct *
select /*+ COALESCE(100) */ distinct *
from (
select peer_reviewed.* from peer_reviewed
union all
select non_peer_reviewed.* from non_peer_reviewed
left join peer_reviewed on peer_reviewed.id=non_peer_reviewed.id
where peer_reviewed.id is null) pr;
where peer_reviewed.id is null) pr; /*EOS*/
CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_refereed as
select * from ${stats_db_name}.publication_refereed
@ -87,23 +87,23 @@ select * from ${stats_db_name}.dataset_refereed
union all
select * from ${stats_db_name}.software_refereed
union all
select * from ${stats_db_name}.otherresearchproduct_refereed;
select * from ${stats_db_name}.otherresearchproduct_refereed; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.indi_impact_measures purge;
DROP TABLE IF EXISTS ${stats_db_name}.indi_impact_measures purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_impact_measures STORED AS PARQUET as
select substr(id, 4) as id, measures_ids.id impactmetric, cast(measures_ids.unit.value[0] as double) score,
select /*+ COALESCE(100) */ substr(id, 4) as id, measures_ids.id impactmetric, cast(measures_ids.unit.value[0] as double) score,
cast(measures_ids.unit.value[0] as decimal(6,3)) score_dec, measures_ids.unit.value[1] impact_class
from ${openaire_db_name}.result lateral view explode(measures) measures as measures_ids
where measures_ids.id!='views' and measures_ids.id!='downloads';
where measures_ids.id!='views' and measures_ids.id!='downloads'; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_apc_affiliations purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_apc_affiliations purge; /*EOS*/
create table if not exists ${stats_db_name}.result_apc_affiliations STORED AS PARQUET as
select distinct substr(rel.target,4) id, substr(rel.source,4) organization, o.legalname.value name,
select /*+ COALESCE(100) */ distinct substr(rel.target,4) id, substr(rel.source,4) organization, o.legalname.value name,
cast(rel.properties[0].value as double) apc_amount,
rel.properties[1].value apc_currency
from ${openaire_db_name}.relation rel
join ${openaire_db_name}.organization o on o.id=rel.source
join ${openaire_db_name}.result r on r.id=rel.target
where rel.subreltype = 'affiliation' and rel.datainfo.deletedbyinference = false and size(rel.properties)>0;
where rel.subreltype = 'affiliation' and rel.datainfo.deletedbyinference = false and size(rel.properties)>0; /*EOS*/

48
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15_5.sql
View File

@ -1,27 +1,27 @@
set mapred.job.queue.name=analytics;
set mapred.job.queue.name=analytics; /*EOS*/
-------------------------------------------
--- Extra tables, mostly used by indicators
DROP TABLE IF EXISTS ${stats_db_name}.result_projectcount purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_projectcount purge; /*EOS*/
create table if not exists ${stats_db_name}.result_projectcount STORED AS PARQUET as
select r.id, count(distinct p.id) as count
select /*+ COALESCE(100) */ r.id, count(distinct p.id) as count
from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_projects rp on rp.id=r.id
left outer join ${stats_db_name}.project p on p.id=rp.project
group by r.id;
group by r.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_fundercount purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_fundercount purge; /*EOS*/
create table if not exists ${stats_db_name}.result_fundercount STORED AS PARQUET as
select r.id, count(distinct p.funder) as count
select /*+ COALESCE(100) */ r.id, count(distinct p.funder) as count
from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_projects rp on rp.id=r.id
left outer join ${stats_db_name}.project p on p.id=rp.project
group by r.id;
group by r.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.project_resultcount purge;
DROP TABLE IF EXISTS ${stats_db_name}.project_resultcount purge; /*EOS*/
create table if not exists ${stats_db_name}.project_resultcount STORED AS PARQUET as
with rcount as (
@ -30,39 +30,39 @@ with rcount as (
left outer join ${stats_db_name}.result_projects rp on rp.project=p.id
left outer join ${stats_db_name}.result r on r.id=rp.id
group by r.type, p.id )
select rcount.pid, sum(case when rcount.type='publication' then rcount.count else 0 end) as publications,
select /*+ COALESCE(100) */ rcount.pid, sum(case when rcount.type='publication' then rcount.count else 0 end) as publications,
sum(case when rcount.type='dataset' then rcount.count else 0 end) as datasets,
sum(case when rcount.type='software' then rcount.count else 0 end) as software,
sum(case when rcount.type='other' then rcount.count else 0 end) as other
from rcount
group by rcount.pid;
group by rcount.pid; /*EOS*/
create or replace view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture;
create or replace view ${stats_db_name}.rndgdpexpenditure as select * from stats_ext.rndgdpexpenditure;
create or replace view ${stats_db_name}.doctoratestudents as select * from stats_ext.doctoratestudents;
create or replace view ${stats_db_name}.totalresearchers as select * from stats_ext.totalresearchers;
create or replace view ${stats_db_name}.totalresearchersft as select * from stats_ext.totalresearchersft;
create or replace view ${stats_db_name}.hrrst as select * from stats_ext.hrrst;
create or replace view ${stats_db_name}.graduatedoctorates as select * from stats_ext.graduatedoctorates;
create or replace view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture; /*EOS*/
create or replace view ${stats_db_name}.rndgdpexpenditure as select * from stats_ext.rndgdpexpenditure; /*EOS*/
create or replace view ${stats_db_name}.doctoratestudents as select * from stats_ext.doctoratestudents; /*EOS*/
create or replace view ${stats_db_name}.totalresearchers as select * from stats_ext.totalresearchers; /*EOS*/
create or replace view ${stats_db_name}.totalresearchersft as select * from stats_ext.totalresearchersft; /*EOS*/
create or replace view ${stats_db_name}.hrrst as select * from stats_ext.hrrst; /*EOS*/
create or replace view ${stats_db_name}.graduatedoctorates as select * from stats_ext.graduatedoctorates; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_instance purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_instance purge; /*EOS*/
create table if not exists ${stats_db_name}.result_instance stored as parquet as
select distinct r.*
select /*+ COALESCE(100) */ distinct r.*
from (
select substr(r.id, 4) as id, inst.accessright.classname as accessright, inst.accessright.openaccessroute as accessright_uw, substr(inst.collectedfrom.key, 4) as collectedfrom,
substr(inst.hostedby.key, 4) as hostedby, inst.dateofacceptance.value as dateofacceptance, inst.license.value as license, p.qualifier.classname as pidtype, p.value as pid
from ${openaire_db_name}.result r lateral view explode(r.instance) instances as inst lateral view outer explode(inst.pid) pids as p) r
join ${stats_db_name}.result res on res.id=r.id;
join ${stats_db_name}.result res on res.id=r.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_apc purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_apc purge; /*EOS*/
create table if not exists ${stats_db_name}.result_apc STORED AS PARQUET as
select distinct r.id, r.amount, r.currency
select /*+ COALESCE(100) */ distinct r.id, r.amount, r.currency
from (
select substr(r.id, 4) as id, cast(inst.processingchargeamount.value as float) as amount, inst.processingchargecurrency.value as currency
from ${openaire_db_name}.result r lateral view explode(r.instance) instances as inst) r
join ${stats_db_name}.result res on res.id=r.id
where r.amount is not null;
where r.amount is not null; /*EOS*/
create or replace view ${stats_db_name}.issn_gold_oa_dataset as select * from ${external_stats_db_name}.issn_gold_oa_dataset;
create or replace view ${stats_db_name}.issn_gold_oa_dataset as select * from ${external_stats_db_name}.issn_gold_oa_dataset; /*EOS*/

184
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql
View File

@ -1,7 +1,7 @@
-- Sprint 1 ----
drop table if exists ${stats_db_name}.indi_pub_green_oa purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_green_oa stored as parquet as
select distinct p.id, coalesce(green_oa, 0) as green_oa
select /*+ COALESCE(100) */ distinct p.id, coalesce(green_oa, 0) as green_oa
from ${stats_db_name}.publication p
left outer join (
select p.id, 1 as green_oa
@ -12,7 +12,7 @@ left outer join (
drop table if exists ${stats_db_name}.indi_pub_grey_lit purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_grey_lit stored as parquet as
select distinct p.id, coalesce(grey_lit, 0) as grey_lit
select /*+ COALESCE(100) */ distinct p.id, coalesce(grey_lit, 0) as grey_lit
from ${stats_db_name}.publication p
left outer join (
select p.id, 1 as grey_lit
@ -23,7 +23,7 @@ left outer join (
drop table if exists ${stats_db_name}.indi_pub_doi_from_crossref purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_doi_from_crossref stored as parquet as
select distinct p.id, coalesce(doi_from_crossref, 0) as doi_from_crossref
select /*+ COALESCE(100) */ distinct p.id, coalesce(doi_from_crossref, 0) as doi_from_crossref
from ${stats_db_name}.publication p
left outer join (
select ri.id, 1 as doi_from_crossref from ${stats_db_name}.result_instance ri
@ -33,7 +33,7 @@ left outer join (
-- Sprint 2 ----
drop table if exists ${stats_db_name}.indi_result_has_cc_licence purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_result_has_cc_licence stored as parquet as
select distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license
select /*+ COALESCE(100) */ distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license
from ${stats_db_name}.result r
left outer join (
select r.id, license.type as lic from ${stats_db_name}.result r
@ -42,7 +42,7 @@ left outer join (
drop table if exists ${stats_db_name}.indi_result_has_cc_licence_url purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_result_has_cc_licence_url stored as parquet as
select distinct r.id, case when lic_host='' or lic_host is null then 0 else 1 end as has_cc_license_url
select /*+ COALESCE(100) */ distinct r.id, case when lic_host='' or lic_host is null then 0 else 1 end as has_cc_license_url
from ${stats_db_name}.result r
left outer join (
select r.id, lower(parse_url(license.type, "HOST")) as lic_host
@ -52,12 +52,12 @@ left outer join (
drop table if exists ${stats_db_name}.indi_pub_has_abstract purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_has_abstract stored as parquet as
select distinct publication.id, cast(coalesce(abstract, true) as int) has_abstract
select /*+ COALESCE(100) */ distinct publication.id, cast(coalesce(abstract, true) as int) has_abstract
from ${stats_db_name}.publication; /*EOS*/
drop table if exists ${stats_db_name}.indi_result_with_orcid purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_result_with_orcid stored as parquet as
select distinct r.id, coalesce(has_orcid, 0) as has_orcid
select /*+ COALESCE(100) */ distinct r.id, coalesce(has_orcid, 0) as has_orcid
from ${stats_db_name}.result r
left outer join (
select id, 1 as has_orcid from ${stats_db_name}.result_orcid) tmp on r.id= tmp.id; /*EOS*/
@ -66,7 +66,7 @@ left outer join (
---- Sprint 3 ----
drop table if exists ${stats_db_name}.indi_funded_result_with_fundref purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_funded_result_with_fundref stored as parquet as
select distinct r.result as id, coalesce(fundref, 0) as fundref
select /*+ COALESCE(100) */ distinct r.result as id, coalesce(fundref, 0) as fundref
from ${stats_db_name}.project_results r
left outer join (
select distinct result, 1 as fundref from ${stats_db_name}.project_results where provenance='Harvested') tmp on r.result= tmp.result; /*EOS*/
@ -77,7 +77,7 @@ create table if not exists ${stats_db_name}.indi_result_org_collab stored as par
SELECT ro.organization organization, ro.id, o.name
from ${stats_db_name}.result_organization ro
join ${stats_db_name}.organization o on o.id=ro.organization where o.name is not null)
select o1.organization org1, o1.name org1name1, o2.organization org2, o2.name org2name2, count(o1.id) as collaborations
select /*+ COALESCE(100) */ o1.organization org1, o1.name org1name1, o2.organization org2, o2.name org2name2, count(o1.id) as collaborations
from tmp as o1
join tmp as o2 where o1.id=o2.id and o1.organization!=o2.organization and o1.name!=o2.name
group by o1.organization, o2.organization, o1.name, o2.name; /*EOS*/
@ -89,7 +89,7 @@ create table if not exists ${stats_db_name}.indi_result_org_country_collab store
from ${stats_db_name}.result_organization ro
join ${stats_db_name}.organization o on o.id=ro.organization
where country <> 'UNKNOWN' and o.name is not null)
select o1.organization org1,o1.name org1name1, o2.country country2, count(o1.id) as collaborations
select /*+ COALESCE(100) */ o1.organization org1,o1.name org1name1, o2.country country2, count(o1.id) as collaborations
from tmp as o1 join tmp as o2 on o1.id=o2.id
where o1.id=o2.id and o1.country!=o2.country
group by o1.organization, o1.id, o1.name, o2.country; /*EOS*/
@ -100,7 +100,7 @@ create table if not exists ${stats_db_name}.indi_project_collab_org stored as pa
select o.id organization, o.name, ro.project as project
from ${stats_db_name}.organization o
join ${stats_db_name}.organization_projects ro on o.id=ro.id where o.name is not null)
select o1.organization org1,o1.name orgname1, o2.organization org2, o2.name orgname2, count(distinct o1.project) as collaborations
select /*+ COALESCE(100) */ o1.organization org1,o1.name orgname1, o2.organization org2, o2.name orgname2, count(distinct o1.project) as collaborations
from tmp as o1
join tmp as o2 on o1.project=o2.project
where o1.organization<>o2.organization and o1.name<>o2.name
@ -112,7 +112,7 @@ create table if not exists ${stats_db_name}.indi_project_collab_org_country stor
select o.id organization, o.name, o.country , ro.project as project
from ${stats_db_name}.organization o
join ${stats_db_name}.organization_projects ro on o.id=ro.id and o.country <> 'UNKNOWN' and o.name is not null)
select o1.organization org1,o1.name org1name, o2.country country2, count(distinct o1.project) as collaborations
select /*+ COALESCE(100) */ o1.organization org1,o1.name org1name, o2.country country2, count(distinct o1.project) as collaborations
from tmp as o1
join tmp as o2 on o1.project=o2.project
where o1.organization<>o2.organization and o1.country<>o2.country
@ -124,7 +124,7 @@ create table if not exists ${stats_db_name}.indi_funder_country_collab stored as
join ${stats_db_name}.organization o on o.id=op.id
join ${stats_db_name}.project p on p.id=op.project
where country <> 'UNKNOWN')
select f1.funder, f1.country as country1, f2.country as country2, count(distinct f1.project) as collaborations
select /*+ COALESCE(100) */ f1.funder, f1.country as country1, f2.country as country2, count(distinct f1.project) as collaborations
from tmp as f1
join tmp as f2 on f1.project=f2.project
where f1.country<>f2.country
@ -136,7 +136,7 @@ create table if not exists ${stats_db_name}.indi_result_country_collab stored as
select distinct country, ro.id as result from ${stats_db_name}.organization o
join ${stats_db_name}.result_organization ro on o.id=ro.organization
where country <> 'UNKNOWN' and o.name is not null)
select o1.country country1, o2.country country2, count(o1.result) as collaborations
select /*+ COALESCE(100) */ o1.country country1, o2.country country2, count(o1.result) as collaborations
from tmp as o1
join tmp as o2 on o1.result=o2.result
where o1.country<>o2.country
@ -146,7 +146,7 @@ create table if not exists ${stats_db_name}.indi_result_country_collab stored as
---- Sprint 4 ----
drop table if exists ${stats_db_name}.indi_pub_diamond purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_diamond stored as parquet as
select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal
select /*+ COALESCE(100) */ distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal
from ${stats_db_name}.publication_datasources pd
left outer join (
select pd.id, 1 as in_diamond_journal
@ -157,7 +157,7 @@ create table if not exists ${stats_db_name}.indi_pub_diamond stored as parquet a
drop table if exists ${stats_db_name}.indi_pub_in_transformative purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_in_transformative stored as parquet as
select distinct pd.id, coalesce(is_transformative, 0) as is_transformative
select /*+ COALESCE(100) */ distinct pd.id, coalesce(is_transformative, 0) as is_transformative
from ${stats_db_name}.publication pd
left outer join (
select pd.id, 1 as is_transformative
@ -168,7 +168,7 @@ create table if not exists ${stats_db_name}.indi_pub_in_transformative stored as
drop table if exists ${stats_db_name}.indi_pub_closed_other_open purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_closed_other_open stored as parquet as
select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open
select /*+ COALESCE(100) */ distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open
from ${stats_db_name}.result_instance ri
left outer join (
select ri.id, 1 as pub_closed_other_open
@ -182,14 +182,14 @@ create table if not exists ${stats_db_name}.indi_pub_closed_other_open stored as
---- Sprint 5 ----
drop table if exists ${stats_db_name}.indi_result_no_of_copies purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_result_no_of_copies stored as parquet as
select id, count(id) as number_of_copies
select /*+ COALESCE(100) */ id, count(id) as number_of_copies
from ${stats_db_name}.result_instance
group by id; /*EOS*/
---- Sprint 6 ----
drop table if exists ${stats_db_name}.indi_pub_downloads purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_downloads stored as parquet as
SELECT result_id, sum(downloads) no_downloads
SELECT /*+ COALESCE(100) */ result_id, sum(downloads) no_downloads
from openaire_prod_usage_stats.usage_stats
join ${stats_db_name}.publication on result_id=id
where downloads>0
@ -197,7 +197,7 @@ create table if not exists ${stats_db_name}.indi_pub_downloads stored as parquet
drop table if exists ${stats_db_name}.indi_pub_downloads_datasource purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_downloads_datasource stored as parquet as
SELECT result_id, repository_id, sum(downloads) no_downloads
SELECT /*+ COALESCE(100) */ result_id, repository_id, sum(downloads) no_downloads
from openaire_prod_usage_stats.usage_stats
join ${stats_db_name}.publication on result_id=id
where downloads>0
@ -205,14 +205,14 @@ create table if not exists ${stats_db_name}.indi_pub_downloads_datasource stored
drop table if exists ${stats_db_name}.indi_pub_downloads_year purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_downloads_year stored as parquet as
SELECT result_id, cast(substring(us.`date`, 1,4) as int) as `year`, sum(downloads) no_downloads
SELECT /*+ COALESCE(100) */ result_id, cast(substring(us.`date`, 1,4) as int) as `year`, sum(downloads) no_downloads
from openaire_prod_usage_stats.usage_stats us
join ${stats_db_name}.publication on result_id=id where downloads>0
GROUP BY result_id, substring(us.`date`, 1,4); /*EOS*/
drop table if exists ${stats_db_name}.indi_pub_downloads_datasource_year purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_downloads_datasource_year stored as parquet as
SELECT result_id, cast(substring(us.`date`, 1,4) as int) as `year`, repository_id, sum(downloads) no_downloads
SELECT /*+ COALESCE(100) */ result_id, cast(substring(us.`date`, 1,4) as int) as `year`, repository_id, sum(downloads) no_downloads
from openaire_prod_usage_stats.usage_stats us
join ${stats_db_name}.publication on result_id=id
where downloads>0
@ -241,7 +241,7 @@ create table if not exists ${stats_db_name}.indi_pub_gold_oa stored as parquet a
UNION ALL
select id, issn_online as issn from ${stats_db_name}.datasource d left semi join gold_oa on gold_oa.issn=d.issn_online) foo
)
SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
SELECT /*+ COALESCE(100) */ DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
FROM ${stats_db_name}.publication pd
left outer join (
select pd.id, 1 as is_gold
@ -272,7 +272,7 @@ create table if not exists ${stats_db_name}.indi_pub_hybrid_oa_with_cc stored as
FROM ${stats_db_name}.datasource
WHERE issn_online IS NOT NULL ) as issn
WHERE LENGTH(issn) > 7)
SELECT DISTINCT pd.id, coalesce(is_hybrid_oa, 0) as is_hybrid_oa
SELECT /*+ COALESCE(100) */ DISTINCT pd.id, coalesce(is_hybrid_oa, 0) as is_hybrid_oa
FROM ${stats_db_name}.publication_datasources pd
LEFT OUTER JOIN (
SELECT pd.id, 1 as is_hybrid_oa from ${stats_db_name}.publication_datasources pd
@ -284,7 +284,7 @@ create table if not exists ${stats_db_name}.indi_pub_hybrid_oa_with_cc stored as
drop table if exists ${stats_db_name}.indi_pub_hybrid purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_hybrid stored as parquet as
select distinct p.id, coalesce(is_hybrid, 0) is_hybrid
select /*+ COALESCE(100) */ distinct p.id, coalesce(is_hybrid, 0) is_hybrid
from ${stats_db_name}.publication p
left outer join (
select p.id, 1 as is_hybrid
@ -313,7 +313,7 @@ create table if not exists ${stats_db_name}.indi_org_fairness stored as parquet
where cast(year as int)>2003
group by ro.organization)
--return results_fair/all_results
select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
select /*+ COALESCE(100) */ allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
from allresults
join result_fair on result_fair.organization=allresults.organization; /*EOS*/
@ -336,7 +336,7 @@ select ro.organization, count(distinct ro.id) no_allresults from ${stats_db_name
drop table if exists ${stats_db_name}.indi_org_fairness_pub_pr purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_org_fairness_pub_pr stored as parquet as
select ar.organization, rf.no_result_fair/ar.no_allresults org_fairness
select /*+ COALESCE(100) */ ar.organization, rf.no_result_fair/ar.no_allresults org_fairness
from allresults ar
join result_fair rf on rf.organization=ar.organization; /*EOS*/
@ -357,7 +357,7 @@ CREATE TEMPORARY VIEW allresults as select year, ro.organization, count(distinct
drop table if exists ${stats_db_name}.indi_org_fairness_pub_year purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_org_fairness_pub_year stored as parquet as
select cast(allresults.year as int) year, allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
select /*+ COALESCE(100) */ cast(allresults.year as int) year, allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
from allresults
join result_fair on result_fair.organization=allresults.organization and result_fair.year=allresults.year; /*EOS*/
@ -381,7 +381,7 @@ CREATE TEMPORARY VIEW allresults as
drop table if exists ${stats_db_name}.indi_org_fairness_pub purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_org_fairness_pub stored as parquet as
select ar.organization, rf.no_result_fair/ar.no_allresults org_fairness
select /*+ COALESCE(100) */ ar.organization, rf.no_result_fair/ar.no_allresults org_fairness
from allresults ar join result_fair rf
on rf.organization=ar.organization; /*EOS*/
@ -404,7 +404,7 @@ CREATE TEMPORARY VIEW allresults as
drop table if exists ${stats_db_name}.indi_org_fairness_year purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_org_fairness_year stored as parquet as
select cast(allresults.year as int) year, allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
select /*+ COALESCE(100) */ cast(allresults.year as int) year, allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
from allresults
join result_fair on result_fair.organization=allresults.organization and cast(result_fair.year as int)=cast(allresults.year as int); /*EOS*/
@ -427,7 +427,7 @@ CREATE TEMPORARY VIEW allresults as
drop table if exists ${stats_db_name}.indi_org_findable_year purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_org_findable_year stored as parquet as
select cast(allresults.year as int) year, allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults org_findable
select /*+ COALESCE(100) */ cast(allresults.year as int) year, allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults org_findable
from allresults
join result_with_pid on result_with_pid.organization=allresults.organization and cast(result_with_pid.year as int)=cast(allresults.year as int); /*EOS*/
@ -450,7 +450,7 @@ select ro.organization, count(distinct ro.id) no_allresults from ${stats_db_name
drop table if exists ${stats_db_name}.indi_org_findable purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_org_findable stored as parquet as
select allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults org_findable
select /*+ COALESCE(100) */ allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults org_findable
from allresults
join result_with_pid on result_with_pid.organization=allresults.organization; /*EOS*/
@ -516,7 +516,7 @@ select software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsof
drop table if exists ${stats_db_name}.indi_org_openess purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_org_openess stored as parquet as
select allpubsshare.organization,
select /*+ COALESCE(100) */ allpubsshare.organization,
(p+if(isnull(s),0,s)+if(isnull(d),0,d))/(1+(case when s is null then 0 else 1 end)
+(case when d is null then 0 else 1 end))
org_openess FROM allpubsshare
@ -593,7 +593,7 @@ select allsoftware.year, software_oa.organization, software_oa.no_oasoftware/all
drop table if exists ${stats_db_name}.indi_org_openess_year purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_org_openess_year stored as parquet as
select cast(allpubsshare.year as int) year, allpubsshare.organization,
select /*+ COALESCE(100) */ cast(allpubsshare.year as int) year, allpubsshare.organization,
(p+if(isnull(s),0,s)+if(isnull(d),0,d))/(1+(case when s is null then 0 else 1 end)
+(case when d is null then 0 else 1 end))
org_openess FROM allpubsshare
@ -617,7 +617,7 @@ DROP VIEW allsoftwaresshare; /*EOS*/
drop table if exists ${stats_db_name}.indi_pub_has_preprint purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_has_preprint stored as parquet as
select distinct p.id, coalesce(has_preprint, 0) as has_preprint
select /*+ COALESCE(100) */ distinct p.id, coalesce(has_preprint, 0) as has_preprint
from ${stats_db_name}.publication_classifications p
left outer join (
select p.id, 1 as has_preprint
@ -627,7 +627,7 @@ from ${stats_db_name}.publication_classifications p
drop table if exists ${stats_db_name}.indi_pub_in_subscribed purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_in_subscribed stored as parquet as
select distinct p.id, coalesce(is_subscription, 0) as is_subscription
select /*+ COALESCE(100) */ distinct p.id, coalesce(is_subscription, 0) as is_subscription
from ${stats_db_name}.publication p
left outer join(
select p.id, 1 as is_subscription from ${stats_db_name}.publication p
@ -640,7 +640,7 @@ from ${stats_db_name}.publication p
drop table if exists ${stats_db_name}.indi_result_with_pid purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_result_with_pid stored as parquet as
select distinct p.id, coalesce(result_with_pid, 0) as result_with_pid
select /*+ COALESCE(100) */ distinct p.id, coalesce(result_with_pid, 0) as result_with_pid
from ${stats_db_name}.result p
left outer join (
select p.id, 1 as result_with_pid
@ -654,7 +654,7 @@ group by rf.id; /*EOS*/
drop table if exists ${stats_db_name}.indi_pub_interdisciplinarity purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_interdisciplinarity stored as parquet as
select distinct p.id as id, coalesce(is_interdisciplinary, 0)
select /*+ COALESCE(100) */ distinct p.id as id, coalesce(is_interdisciplinary, 0)
as is_interdisciplinary
from pub_fos_totals p
left outer join (
@ -666,7 +666,7 @@ drop view pub_fos_totals; /*EOS*/
drop table if exists ${stats_db_name}.indi_pub_bronze_oa purge; /*EOS*/
create table ${stats_db_name}.indi_pub_bronze_oa stored as parquet as
select distinct p.id,coalesce(is_bronze_oa,0) is_bronze_oa
select /*+ COALESCE(100) */ distinct p.id,coalesce(is_bronze_oa,0) is_bronze_oa
from ${stats_db_name}.publication p
left outer join (
select p.id, 1 as is_bronze_oa
@ -689,7 +689,7 @@ where p.end_year is NOT NULL and r.year is not null; /*EOS*/
drop table if exists ${stats_db_name}.indi_is_project_result_after purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_is_project_result_after stored as parquet as
select pry.project_id, pry.acronym, pry.result_id,
select /*+ COALESCE(100) */ pry.project_id, pry.acronym, pry.result_id,
coalesce(is_project_result_after, 0) as is_project_result_after
from project_year_result_year pry
left outer join (select pry.project_id, pry.acronym, pry.result_id, 1 as is_project_result_after
@ -701,7 +701,7 @@ drop view project_year_result_year; /*EOS*/
drop table if exists ${stats_db_name}.indi_is_funder_plan_s purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_is_funder_plan_s stored as parquet as
select distinct f.id, f.name, coalesce(is_funder_plan_s, 0) as is_funder_plan_s
select /*+ COALESCE(100) */ distinct f.id, f.name, coalesce(is_funder_plan_s, 0) as is_funder_plan_s
from ${stats_db_name}.funder f
left outer join (select id, name, 1 as is_funder_plan_s from ${stats_db_name}.funder
join stats_ext.plan_s_short on c_o_alition_s_organisation_funder=name) tmp
@ -722,7 +722,7 @@ create table if not exists ${stats_db_name}.indi_funder_fairness stored as parqu
join ${stats_db_name}.project p on p.id=rp.project
where cast(year as int)>2003
group by p.funder)
select allresults.funder, result_fair.no_result_fair/allresults.no_allresults funder_fairness
select /*+ COALESCE(100) */ allresults.funder, result_fair.no_result_fair/allresults.no_allresults funder_fairness
from allresults
join result_fair on result_fair.funder=allresults.funder; /*EOS*/
@ -745,7 +745,7 @@ allresults as
join ${stats_db_name}.result r on r.id=rc.id
where cast(year as int)>2003
group by rc.ri_initiative)
select allresults.ri_initiative, result_fair.no_result_fair/allresults.no_allresults ris_fairness
select /*+ COALESCE(100) */ allresults.ri_initiative, result_fair.no_result_fair/allresults.no_allresults ris_fairness
from allresults
join result_fair on result_fair.ri_initiative=allresults.ri_initiative; /*EOS*/
@ -817,16 +817,14 @@ select software_oa.funder, software_oa.no_oasoftware/allsoftware.no_allsoftware
drop table if exists ${stats_db_name}.indi_funder_openess purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_funder_openess stored as parquet as
select allpubsshare.funder,
(p+if(isnull(s),0,s)+if(isnull(d),0,d))/(1+(case when s is null then 0 else 1 end)
+(case when d is null then 0 else 1 end))
funder_openess FROM allpubsshare
left outer join (select funder,d from
alldatasetssshare) tmp1
on tmp1.funder=allpubsshare.funder
left outer join (select funder,s from
allsoftwaresshare) tmp2
on tmp2.funder=allpubsshare.funder; /*EOS*/
select /*+ COALESCE(100) */ allpubsshare.funder,
(p+if(isnull(s),0,s)+if(isnull(d),0,d))/(1+(case when s is null then 0 else 1 end)
+(case when d is null then 0 else 1 end)) funder_openess
FROM allpubsshare
left outer join (select funder,d from alldatasetssshare) tmp1
on tmp1.funder=allpubsshare.funder
left outer join (select funder,s from allsoftwaresshare) tmp2
on tmp2.funder=allpubsshare.funder; /*EOS*/
DROP VIEW pubs_oa; /*EOS*/
DROP VIEW datasets_oa; /*EOS*/
@ -905,7 +903,7 @@ select software_oa.ri_initiative, software_oa.no_oasoftware/allsoftware.no_allso
drop table if exists ${stats_db_name}.indi_ris_openess purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_ris_openess stored as parquet as
select allpubsshare.ri_initiative,
select /*+ COALESCE(100) */ allpubsshare.ri_initiative,
(p+if(isnull(s),0,s)+if(isnull(d),0,d))/(1+(case when s is null then 0 else 1 end)
+(case when d is null then 0 else 1 end))
ris_openess FROM allpubsshare
@ -943,7 +941,7 @@ with result_findable as
join ${stats_db_name}.project p on p.id=rp.project
where cast(year as int)>2003
group by p.funder)
select allresults.funder, result_findable.no_result_findable/allresults.no_allresults funder_findable
select /*+ COALESCE(100) */ allresults.funder, result_findable.no_result_findable/allresults.no_allresults funder_findable
from allresults
join result_findable on result_findable.funder=allresults.funder; /*EOS*/
@ -952,41 +950,43 @@ drop table if exists ${stats_db_name}.indi_ris_findable purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_ris_findable stored as parquet as
with result_contexts as
(select distinct rc.id, context.name ri_initiative from ${stats_db_name}.result_concepts rc
join ${stats_db_name}.concept on concept.id=rc.concept
join ${stats_db_name}.category on category.id=concept.category
join ${stats_db_name}.context on context.id=category.context),
result_findable as
(select rc.ri_initiative ri_initiative, count(distinct rc.id) no_result_findable from result_contexts rc
join ${stats_db_name}.result r on r.id=rc.id
join ${stats_db_name}.result_pids rp on rp.id=r.id
where cast(r.year as int)>2003
group by rc.ri_initiative),
allresults as
(select rc.ri_initiative ri_initiative, count(distinct rc.id) no_allresults from result_contexts rc
join ${stats_db_name}.result r on r.id=rc.id
where cast(r.year as int)>2003
group by rc.ri_initiative)
select allresults.ri_initiative, result_findable.no_result_findable/allresults.no_allresults ris_findable
(select distinct rc.id, context.name ri_initiative from ${stats_db_name}.result_concepts rc
join ${stats_db_name}.concept on concept.id=rc.concept
join ${stats_db_name}.category on category.id=concept.category
join ${stats_db_name}.context on context.id=category.context),
result_findable as
(select rc.ri_initiative ri_initiative, count(distinct rc.id) no_result_findable from result_contexts rc
join ${stats_db_name}.result r on r.id=rc.id
join ${stats_db_name}.result_pids rp on rp.id=r.id
where cast(r.year as int)>2003
group by rc.ri_initiative),
allresults as
(select rc.ri_initiative ri_initiative, count(distinct rc.id) no_allresults from result_contexts rc
join ${stats_db_name}.result r on r.id=rc.id
where cast(r.year as int)>2003
group by rc.ri_initiative)
select /*+ COALESCE(100) */ allresults.ri_initiative, result_findable.no_result_findable/allresults.no_allresults ris_findable
from allresults
join result_findable on result_findable.ri_initiative=allresults.ri_initiative; /*EOS*/
drop table if exists ${stats_db_name}.indi_pub_publicly_funded purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_publicly_funded stored as parquet as
with org_names_pids as
(select org.id,name, pid from ${stats_db_name}.organization org
join ${stats_db_name}.organization_pids op on org.id=op.id),
publicly_funded_orgs as
(select distinct name from
(select pf.name from stats_ext.insitutions_for_publicly_funded pf
join ${stats_db_name}.fundref f on f.name=pf.name where f.type='government'
union all
select pf.name from stats_ext.insitutions_for_publicly_funded pf
join ${stats_db_name}.project p on p.funder=pf.name
union all
select op.name from stats_ext.insitutions_for_publicly_funded pf
join org_names_pids op on (op.name=pf.name or op.pid=pf.ror)
and pf.publicly_funded='yes') foo)
select distinct p.id, coalesce(publicly_funded, 0) as publicly_funded
(select org.id,name, pid from ${stats_db_name}.organization org
join ${stats_db_name}.organization_pids op on org.id=op.id),
publicly_funded_orgs as
(select distinct name from
(select pf.name from stats_ext.insitutions_for_publicly_funded pf
join ${stats_db_name}.fundref f on f.name=pf.name where f.type='government'
union all
select pf.name from stats_ext.insitutions_for_publicly_funded pf
join ${stats_db_name}.project p on p.funder=pf.name
union all
select op.name from stats_ext.insitutions_for_publicly_funded pf
join org_names_pids op on (op.name=pf.name or op.pid=pf.ror)
and pf.publicly_funded='yes') foo)
select /*+ COALESCE(100) */ distinct p.id, coalesce(publicly_funded, 0) as publicly_funded
from ${stats_db_name}.publication p
left outer join (
select distinct ro.id, 1 as publicly_funded from ${stats_db_name}.result_organization ro
@ -995,7 +995,7 @@ join publicly_funded_orgs pfo on o.name=pfo.name) tmp on p.id=tmp.id; /*EOS*/
drop table if exists ${stats_db_name}.indi_pub_green_with_license purge; /*EOS*/
create table ${stats_db_name}.indi_pub_green_with_license stored as parquet as
select distinct p.id, coalesce(green_with_license, 0) as green_with_license
select /*+ COALESCE(100) */ distinct p.id, coalesce(green_with_license, 0) as green_with_license
from ${stats_db_name}.publication p
left outer join (
select distinct p.id, 1 as green_with_license from ${stats_db_name}.publication p
@ -1006,7 +1006,7 @@ left outer join (
drop table if exists ${stats_db_name}.result_country purge; /*EOS*/
create table ${stats_db_name}.result_country stored as parquet as
select distinct id, country
select /*+ COALESCE(100) */ distinct id, country
from (
select ro.id, o.country
from ${stats_db_name}.result_organization ro
@ -1021,7 +1021,7 @@ where rc.country is not null; /*EOS*/
drop table if exists ${stats_db_name}.indi_result_oa_with_license purge; /*EOS*/
create table ${stats_db_name}.indi_result_oa_with_license stored as parquet as
select distinct r.id, coalesce(oa_with_license,0) as oa_with_license
select /*+ COALESCE(100) */ distinct r.id, coalesce(oa_with_license,0) as oa_with_license
from ${stats_db_name}.result r
left outer join (select distinct r.id, 1 as oa_with_license from ${stats_db_name}.result r
join ${stats_db_name}.result_licenses rl on rl.id=r.id where r.bestlicence='Open Access') tmp on r.id=tmp.id; /*EOS*/
@ -1029,9 +1029,9 @@ join ${stats_db_name}.result_licenses rl on rl.id=r.id where r.bestlicence='Open
drop table if exists ${stats_db_name}.indi_result_oa_without_license purge; /*EOS*/
create table ${stats_db_name}.indi_result_oa_without_license stored as parquet as
with without_license as
(select distinct id from ${stats_db_name}.indi_result_oa_with_license
where oa_with_license=0)
select distinct r.id, coalesce(oa_without_license,0) as oa_without_license
(select distinct id from ${stats_db_name}.indi_result_oa_with_license
where oa_with_license=0)
select /*+ COALESCE(100) */ distinct r.id, coalesce(oa_without_license,0) as oa_without_license
from ${stats_db_name}.result r
left outer join (select distinct r.id, 1 as oa_without_license
from ${stats_db_name}.result r
@ -1042,7 +1042,7 @@ drop table if exists ${stats_db_name}.indi_result_under_transformative purge; /*
create table ${stats_db_name}.indi_result_under_transformative stored as parquet as
with transformative_dois as (
select distinct doi from stats_ext.transformative_facts)
select distinct r.id, coalesce(under_transformative,0) as under_transformative
select /*+ COALESCE(100) */ distinct r.id, coalesce(under_transformative,0) as under_transformative
from ${stats_db_name}.result r
left outer join (
select distinct rp.id, 1 as under_transformative

20
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_1-definitions.sql
View File

@ -1,30 +1,30 @@
set mapred.job.queue.name=analytics;
set mapred.job.queue.name=analytics; /*EOS*/
----------------------------------------------------
-- Shortcuts for various definitions in stats db ---
----------------------------------------------------
-- Peer reviewed:
drop table if exists ${stats_db_name}.result_peerreviewed purge;
drop table if exists ${stats_db_name}.result_peerreviewed purge; /*EOS*/
create table IF NOT EXISTS ${stats_db_name}.result_peerreviewed STORED AS PARQUET as
select r.id as id, case when doi.doi_from_crossref=1 and grey.grey_lit=0 then true else false end as peer_reviewed
select /*+ COALESCE(100) */ r.id as id, case when doi.doi_from_crossref=1 and grey.grey_lit=0 then true else false end as peer_reviewed
from ${stats_db_name}.result r
left outer join ${stats_db_name}.indi_pub_doi_from_crossref doi on doi.id=r.id
left outer join ${stats_db_name}.indi_pub_grey_lit grey on grey.id=r.id;
left outer join ${stats_db_name}.indi_pub_grey_lit grey on grey.id=r.id; /*EOS*/
-- Green OA:
drop table if exists ${stats_db_name}.result_greenoa purge;
drop table if exists ${stats_db_name}.result_greenoa purge; /*EOS*/
create table IF NOT EXISTS ${stats_db_name}.result_greenoa STORED AS PARQUET as
select r.id, case when green.green_oa=1 then true else false end as green
select /*+ COALESCE(100) */ r.id, case when green.green_oa=1 then true else false end as green
from ${stats_db_name}.result r
left outer join ${stats_db_name}.indi_pub_green_oa green on green.id=r.id;
left outer join ${stats_db_name}.indi_pub_green_oa green on green.id=r.id; /*EOS*/
-- GOLD OA:
drop table if exists ${stats_db_name}.result_gold purge;
drop table if exists ${stats_db_name}.result_gold purge; /*EOS*/
create table IF NOT EXISTS ${stats_db_name}.result_gold STORED AS PARQUET as
select r.id, case when gold.is_gold=1 then true else false end as gold
select /*+ COALESCE(100) */ r.id, case when gold.is_gold=1 then true else false end as gold
from ${stats_db_name}.result r
left outer join ${stats_db_name}.indi_pub_gold_oa gold on gold.id=r.id;
left outer join ${stats_db_name}.indi_pub_gold_oa gold on gold.id=r.id; /*EOS*/

72
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_5.sql
View File

@ -1,58 +1,26 @@
set mapred.job.queue.name=analytics;
set mapred.job.queue.name=analytics; /*EOS*/
-- replace the creation of the result view to include the boolean fields from the previous tables (green, gold,
-- replace the creation of the result view with a table, which will include the boolean fields from the previous tables (green, gold,
-- peer reviewed)
drop table if exists ${stats_db_name}.result_tmp;
CREATE TABLE ${stats_db_name}.result_tmp (
id STRING,
title STRING,
publisher STRING,
journal STRING,
`date` STRING,
`year` INT,
bestlicence STRING,
access_mode STRING,
embargo_end_date STRING,
delayed BOOLEAN,
authors INT,
source STRING,
abstract BOOLEAN,
type STRING ,
peer_reviewed BOOLEAN,
green BOOLEAN,
gold BOOLEAN)
clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
drop view if exists ${stats_db_name}.result; /*EOS*/
drop table if exists ${stats_db_name}.result; /*EOS*/
insert into ${stats_db_name}.result_tmp
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
FROM ${stats_db_name}.publication r
CREATE TABLE ${stats_db_name}.result stored as parquet as
SELECT /*+ COALESCE(100) */ r.id, r.title, r.publisher, r.journal, r.`date`, DATE_FORMAT(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
FROM (
(SELECT id, title, p.publisher, journal, `date`, DATE_FORMAT(`date`, 'yyyy'), bestlicence, bestlicence, embargo_end_date, delayed, authors, source, abstract, type
FROM ${stats_db_name}.publication)
UNION ALL
(SELECT id, title, p.publisher, journal, `date`, DATE_FORMAT(`date`, 'yyyy'), bestlicence, bestlicence, embargo_end_date, delayed, authors, source, abstract, type
FROM ${stats_db_name}.dataset)
UNION ALL
(select id, title, p.publisher, journal, `date`, DATE_FORMAT(`date`, 'yyyy'), bestlicence, bestlicence, embargo_end_date, delayed, authors, source, abstract, type
FROM ${stats_db_name}.software)
UNION ALL
(select id, title, p.publisher, journal, `date`, DATE_FORMAT(`date`, 'yyyy'), bestlicence, bestlicence, embargo_end_date, delayed, authors, source, abstract, type
FROM ${stats_db_name}.otherresearchproduct)
) r
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
insert into ${stats_db_name}.result_tmp
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
FROM ${stats_db_name}.dataset r
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
insert into ${stats_db_name}.result_tmp
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
FROM ${stats_db_name}.software r
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
insert into ${stats_db_name}.result_tmp
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
FROM ${stats_db_name}.otherresearchproduct r
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
drop table if exists ${stats_db_name}.result;
drop view if exists ${stats_db_name}.result;
create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp;
drop table ${stats_db_name}.result_tmp;
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id; /*EOS*/

118
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql
View File

@ -1,4 +1,4 @@
set mapred.job.queue.name=analytics;
set mapred.job.queue.name=analytics; /*EOS*/
--------------------------------------------------------------
--------------------------------------------------------------
@ -7,65 +7,65 @@ set mapred.job.queue.name=analytics;
--------------------------------------------------------------
-- Publication temporary table
DROP TABLE IF EXISTS ${stats_db_name}.publication_tmp purge;
CREATE TABLE ${stats_db_name}.publication_tmp
(
id STRING,
title STRING,
publisher STRING,
journal STRING,
date STRING,
year STRING,
bestlicence STRING,
embargo_end_date STRING,
delayed BOOLEAN,
authors INT,
source STRING,
abstract BOOLEAN,
type STRING
)
clustered by (id) into 100 buckets stored as orc tblproperties ('transactional' = 'true');
DROP TABLE IF EXISTS ${stats_db_name}.publication purge; /*EOS*/
INSERT INTO ${stats_db_name}.publication_tmp
SELECT substr(p.id, 4) as id,
p.title[0].value as title,
p.publisher.value as publisher,
p.journal.name as journal,
p.dateofacceptance.value as date,
date_format(p.dateofacceptance.value, 'yyyy') as year,
p.bestaccessright.classname as bestlicence,
p.embargoenddate.value as embargo_end_date,
false as delayed,
size(p.author) as authors,
concat_ws('\u003B', p.source.value) as source,
case when size(p.description) > 0 then true else false end as abstract,
'publication' as type
from ${openaire_db_name}.publication p
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
CREATE TABLE ${stats_db_name}.publication stored as parquet as
with pub_pr as (
select pub.id as pub_id, case when (to_date(pub.dateofacceptance.value) > to_date( pj.enddate.value)) then true else false end as delayed
from ${openaire_db_name}.publication pub
join ${openaire_db_name}.relation rel
on reltype = 'resultProject' and relclass = 'isProducedBy' and rel.source=pub.id
and rel.datainfo.deletedbyinference = false and rel.datainfo.invisible = false
join ${openaire_db_name}.project pj on pj.id=rel.target and pj.datainfo.deletedbyinference = false and pj.datainfo.invisible = false
where pub.datainfo.deletedbyinference = false and pub.datainfo.invisible = false
),
pub_delayed as (
select pub_id, max(delayed) as delayed
from pub_pr
group by pub_id
)
select /*+ COALESCE(100) */
substr(pub.id, 4) as id,
pub.title[0].value as title,
pub.publisher.value as publisher,
pub.journal.name as journal,
pub.dateofacceptance.value as date,
date_format(pub.dateofacceptance.value, 'yyyy') as year,
pub.bestaccessright.classname as bestlicence,
pub.embargoenddate.value as embargo_end_date,
coalesce(pub_delayed.delayed, false) as delayed, -- It's delayed, when the publication was published after the end of at least one of its projects.
size(pub.author) as authors,
concat_ws('\u003B', pub.source.value) as source,
case when size(pub.description) > 0 then true else false end as abstract,
'publication' as type
from ${openaire_db_name}.publication pub
left outer join pub_delayed on pub.id=pub_delayed.pub_id
where pub.datainfo.deletedbyinference = false and pub.datainfo.invisible = false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.publication_classifications purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_classifications purge; /*EOS*/
CREATE TABLE ${stats_db_name}.publication_classifications STORED AS PARQUET AS
SELECT substr(p.id, 4) as id, instancetype.classname as type
SELECT /*+ COALESCE(100) */ substr(p.id, 4) as id, instancetype.classname as type
from ${openaire_db_name}.publication p
LATERAL VIEW explode(p.instance.instancetype) instances as instancetype
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.publication_concepts purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_concepts purge; /*EOS*/
CREATE TABLE ${stats_db_name}.publication_concepts STORED AS PARQUET AS
SELECT substr(p.id, 4) as id, case
SELECT /*+ COALESCE(100) */ substr(p.id, 4) as id, case
when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
from ${openaire_db_name}.publication p
LATERAL VIEW explode(p.context) contexts as context
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.publication_datasources purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_datasources purge; /*EOS*/
CREATE TABLE ${stats_db_name}.publication_datasources STORED AS PARQUET as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
SELECT /*+ COALESCE(100) */ p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance
@ -73,44 +73,44 @@ FROM (
LEFT OUTER JOIN (
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference = false and d.datainfo.invisible=false) d on p.datasource = d.id;
WHERE d.datainfo.deletedbyinference = false and d.datainfo.invisible=false) d on p.datasource = d.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.publication_languages purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_languages purge; /*EOS*/
CREATE TABLE ${stats_db_name}.publication_languages STORED AS PARQUET AS
select substr(p.id, 4) as id, p.language.classname as language
select /*+ COALESCE(100) */ substr(p.id, 4) as id, p.language.classname as language
FROM ${openaire_db_name}.publication p
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.publication_oids purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_oids purge; /*EOS*/
CREATE TABLE ${stats_db_name}.publication_oids STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, oids.ids AS oid
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.publication p
LATERAL VIEW explode(p.originalid) oids AS ids
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.publication_pids purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_pids purge; /*EOS*/
CREATE TABLE ${stats_db_name}.publication_pids STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid
FROM ${openaire_db_name}.publication p
LATERAL VIEW explode(p.pid) pids AS ppid
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.publication_topics purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_topics purge; /*EOS*/
CREATE TABLE ${stats_db_name}.publication_topics STORED AS PARQUET as
select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic
select /*+ COALESCE(100) */ substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic
FROM ${openaire_db_name}.publication p
LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.publication_citations purge;
DROP TABLE IF EXISTS ${stats_db_name}.publication_citations purge; /*EOS*/
CREATE TABLE ${stats_db_name}.publication_citations STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS cites
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS cites
FROM ${openaire_db_name}.publication p
lateral view explode(p.extrainfo) citations AS citation
WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
and p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
and p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/

2
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql
View File

@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics; /*EOS*/
create view if not exists TARGET.category as select * from SOURCE.category;
create view if not exists TARGET.concept as select * from SOURCE.concept;
create view if not exists TARGET.context as select * from SOURCE.context;

17
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDBAll.sql
View File

@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics; /*EOS*/
drop database if exists TARGET cascade;
create database if not exists TARGET;
@ -81,11 +83,17 @@ create table TARGET.result stored as parquet as
'openorgs____::8839b55dae0c84d56fd533f52d5d483a', -- Leibniz Institute of Ecological Urban and Regional Development
'openorgs____::526468206bca24c1c90da6a312295cf4', -- Cyprus University of Technology
'openorgs____::b5ca9d4340e26454e367e2908ef3872f', -- Alma Mater Studiorum University of Bologna
'openorgs____::a6340e6ecf60f6bba163659df985b0f2', -- TU Dresden
'openorgs____::64badd35233ba2cd4946368ef2f4cf57', -- University of Vienna
'openorgs____::a6340e6ecf60f6bba163659df985b0f2', -- TU Dresden
'openorgs____::64badd35233ba2cd4946368ef2f4cf57', -- University of Vienna
'openorgs____::7501d66d2297a963ebfb075c43fff88e', -- Royal Institute of Technology
'openorgs____::d5eb679abdd31f70fcd4c8ba711148bf', -- Sorbonne University
'openorgs____::b316f25380d106aac402f5ae8653910d' -- Centre for Research on Ecology and Forestry Applications
'openorgs____::d5eb679abdd31f70fcd4c8ba711148bf', -- Sorbonne University
'openorgs____::b316f25380d106aac402f5ae8653910d', -- Centre for Research on Ecology and Forestry Applications
'openorgs____::45a2076eee3013e0e85625ce61bcd272', -- Institut d'Investigació Sanitària Illes Balears
'openorgs____::00b20b0a743a96169e6cf135e6e2bd7c', -- Universidad Publica De Navarra
'openorgs____::0f398605c2459294d125ff23473a97dc', -- Aalto University
'openorgs____::25b1fa62c7fd8e409d3a83c07e04b2d4', -- WHU-Otto Beisheim School of Management
'openorgs____::d6eec313417f11205db4e736a34c0db6', -- KEMPELENOV INSTITUT INTELIGENTNYCH TECHNOLOGII
'openorgs____::c2dfb90e797a2dc52f0084c549289d0c' -- National Research Institute for Agriculture, Food and Environment
) )) foo;
create view if not exists TARGET.category as select * from SOURCE.category;
@ -256,7 +264,6 @@ create table TARGET.indi_pub_interdisciplinarity stored as parquet as select * f
create table TARGET.result_apc_affiliations stored as parquet as select * from SOURCE.result_apc_affiliations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
create table TARGET.result_instance stored as parquet as select * from SOURCE.result_instance orig where exists (select 1 from TARGET.result r where r.id=orig.id);
create table TARGET.result_orcid stored as parquet as select * from SOURCE.result_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
create table TARGET.indi_pub_publicly_funded stored as parquet as select * from SOURCE.indi_pub_publicly_funded orig where exists (select 1 from TARGET.result r where r.id=orig.id);
create table TARGET.indi_is_project_result_after stored as parquet as select * from SOURCE.indi_is_project_result_after orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);

2
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB_RIs.sql
View File

@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics;
drop database if exists TARGET cascade;
create database if not exists TARGET;

2
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB_RIs_tail.sql
View File

@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics;
drop database if exists TARGET cascade;
create database if not exists TARGET;

2
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB_funded.sql
View File

@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics;
drop database if exists TARGET cascade;
create database if not exists TARGET;

12
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB_institutions.sql
View File

@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics;
drop database if exists TARGET cascade;
create database if not exists TARGET;
@ -65,5 +67,11 @@ create table TARGET.result stored as parquet as
'openorgs____::64badd35233ba2cd4946368ef2f4cf57', -- University of Vienna
'openorgs____::7501d66d2297a963ebfb075c43fff88e', -- Royal Institute of Technology
'openorgs____::d5eb679abdd31f70fcd4c8ba711148bf', -- Sorbonne University
'openorgs____::b316f25380d106aac402f5ae8653910d' -- Centre for Research on Ecology and Forestry Applications
))) foo;
'openorgs____::b316f25380d106aac402f5ae8653910d', -- Centre for Research on Ecology and Forestry Applications
'openorgs____::45a2076eee3013e0e85625ce61bcd272', -- Institut d'Investigació Sanitària Illes Balears
'openorgs____::00b20b0a743a96169e6cf135e6e2bd7c', -- Universidad Publica De Navarra
'openorgs____::0f398605c2459294d125ff23473a97dc', -- Aalto University
'openorgs____::25b1fa62c7fd8e409d3a83c07e04b2d4', -- WHU-Otto Beisheim School of Management
'openorgs____::d6eec313417f11205db4e736a34c0db6', -- KEMPELENOV INSTITUT INTELIGENTNYCH TECHNOLOGII
'openorgs____::c2dfb90e797a2dc52f0084c549289d0c' -- National Research Institute for Agriculture, Food and Environment
))) foo;

78
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step21-createObservatoryDB.sql
View File

@ -1,15 +1,17 @@
set mapred.job.queue.name=analytics; /*EOS*/
create table ${observatory_db_name}.result_cc_licence stored as parquet as
select r.id, coalesce(rln.count, 0) > 0 as cc_licence
select /*+ COALESCE(100) */ r.id, coalesce(rln.count, 0) > 0 as cc_licence
from ${stats_db_name}.result r
left outer join (
select rl.id, sum(case when rl.type like 'CC%' then 1 else 0 end) as count
from ${stats_db_name}.result_licenses rl
group by rl.id
) rln on rln.id=r.id;
) rln on rln.id=r.id; /*EOS*/
create table ${observatory_db_name}.result_affiliated_country stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -35,11 +37,11 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name; /*EOS*/
create table ${observatory_db_name}.result_affiliated_year stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -65,11 +67,11 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year; /*EOS*/
create table ${observatory_db_name}.result_affiliated_year_country stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -95,11 +97,11 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name; /*EOS*/
create table ${observatory_db_name}.result_affiliated_datasource stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -127,10 +129,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name; /*EOS*/
create table ${observatory_db_name}.result_affiliated_datasource_country stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -158,10 +160,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name; /*EOS*/
create table ${observatory_db_name}.result_affiliated_organization stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -187,10 +189,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name; /*EOS*/
create table ${observatory_db_name}.result_affiliated_organization_country stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -216,10 +218,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name; /*EOS*/
create table ${observatory_db_name}.result_affiliated_funder stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -247,10 +249,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder; /*EOS*/
create table ${observatory_db_name}.result_affiliated_funder_country stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -278,10 +280,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name; /*EOS*/
create table ${observatory_db_name}.result_deposited_country stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -309,10 +311,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name; /*EOS*/
create table ${observatory_db_name}.result_deposited_year stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -340,11 +342,11 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year; /*EOS*/
create table ${observatory_db_name}.result_deposited_year_country stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -372,10 +374,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name; /*EOS*/
create table ${observatory_db_name}.result_deposited_datasource stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -403,10 +405,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name; /*EOS*/
create table ${observatory_db_name}.result_deposited_datasource_country stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -434,10 +436,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name; /*EOS*/
create table ${observatory_db_name}.result_deposited_organization stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -465,10 +467,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name; /*EOS*/
create table ${observatory_db_name}.result_deposited_organization_country stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -496,10 +498,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name; /*EOS*/
create table ${observatory_db_name}.result_deposited_funder stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -529,10 +531,10 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder; /*EOS*/
create table ${observatory_db_name}.result_deposited_funder_country stored as parquet as
select
select /*+ COALESCE(100) */
count(distinct r.id) as total,
r.green,
r.gold,
@ -562,4 +564,4 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name;
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name; /*EOS*/

115
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step3.sql
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@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics; /*EOS*/
------------------------------------------------------
------------------------------------------------------
-- Dataset table/view and Dataset related tables/views
@ -5,75 +7,74 @@
------------------------------------------------------
-- Dataset temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset purge; /*EOS*/
CREATE TABLE ${stats_db_name}.dataset_tmp
(
id STRING,
title STRING,
publisher STRING,
journal STRING,
date STRING,
year STRING,
bestlicence STRING,
embargo_end_date STRING,
delayed BOOLEAN,
authors INT,
source STRING,
abstract BOOLEAN,
type STRING
CREATE TABLE ${stats_db_name}.dataset stored as parquet as
with datast_pr as (
select datast.id as datast_id, case when (to_date(datast.dateofacceptance.value) > to_date( pj.enddate.value)) then true else false end as delayed
from ${openaire_db_name}.dataset datast
join ${openaire_db_name}.relation rel
on reltype = 'resultProject' and relclass = 'isProducedBy' and rel.source=datast.id
and rel.datainfo.deletedbyinference = false and rel.datainfo.invisible = false
join ${openaire_db_name}.project pj on pj.id=rel.target and pj.datainfo.deletedbyinference = false and pj.datainfo.invisible = false
where datast.datainfo.deletedbyinference = false and datast.datainfo.invisible = false
),
datast_delayed as (
select datast_id, max(delayed) as delayed
from datast_pr
group by datast_id
)
clustered by (id) into 100 buckets stored AS orc tblproperties ('transactional' = 'true');
select /*+ COALESCE(100) */
substr(datast.id, 4) as id,
datast.title[0].value as title,
datast.publisher.value as publisher,
cast(null as string) as journal,
datast.dateofacceptance.value as date,
date_format(datast.dateofacceptance.value, 'yyyy') as year,
datast.bestaccessright.classname as bestlicence,
datast.embargoenddate.value as embargo_end_date,
coalesce(datast_delayed.delayed, false) as delayed, -- It's delayed, when the dataset was published after the end of the project.
size(datast.author) as authors,
concat_ws('\u003B', datast.source.value) as source,
case when size(datast.description) > 0 then true else false end as abstract,
'dataset' as type
from ${openaire_db_name}.dataset datast
left outer join datast_delayed on datast.id=datast_delayed.datast_id
where datast.datainfo.deletedbyinference = false and datast.datainfo.invisible = false; /*EOS*/
INSERT INTO ${stats_db_name}.dataset_tmp
SELECT substr(d.id, 4) AS id,
d.title[0].value AS title,
d.publisher.value AS publisher,
cast(null AS string) AS journal,
d.dateofacceptance.value as date,
date_format(d.dateofacceptance.value, 'yyyy') AS year,
d.bestaccessright.classname AS bestlicence,
d.embargoenddate.value AS embargo_end_date,
false AS delayed,
size(d.author) AS authors,
concat_ws('\u003B', d.source.value) AS source,
CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract,
'dataset' AS type
FROM ${openaire_db_name}.dataset d
WHERE d.datainfo.deletedbyinference = FALSE and d.datainfo.invisible=false;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_citations purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_citations purge; /*EOS*/
CREATE TABLE ${stats_db_name}.dataset_citations STORED AS PARQUET AS
SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS cites
SELECT /*+ COALESCE(100) */ substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS cites
FROM ${openaire_db_name}.dataset d
LATERAL VIEW explode(d.extrainfo) citations AS citation
WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
and d.datainfo.deletedbyinference = false and d.datainfo.invisible=false;
and d.datainfo.deletedbyinference = false and d.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.dataset_classifications purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_classifications purge; /*EOS*/
CREATE TABLE ${stats_db_name}.dataset_classifications STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, instancetype.classname AS type
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, instancetype.classname AS type
FROM ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.dataset_concepts purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_concepts purge; /*EOS*/
CREATE TABLE ${stats_db_name}.dataset_concepts STORED AS PARQUET AS
SELECT substr(p.id, 4) as id, case
SELECT /*+ COALESCE(100) */ substr(p.id, 4) as id, case
when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
from ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.context) contexts as context
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.dataset_datasources purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_datasources purge; /*EOS*/
CREATE TABLE ${stats_db_name}.dataset_datasources STORED AS PARQUET AS
SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource
SELECT /*+ COALESCE(100) */ p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource
FROM (
SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.dataset p
@ -82,35 +83,35 @@ FROM (
LEFT OUTER JOIN (
SELECT substr(d.id, 4) id
FROM ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference = false and d.datainfo.invisible=false) d ON p.datasource = d.id;
WHERE d.datainfo.deletedbyinference = false and d.datainfo.invisible=false) d ON p.datasource = d.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.dataset_languages purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_languages purge; /*EOS*/
CREATE TABLE ${stats_db_name}.dataset_languages STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, p.language.classname AS language
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, p.language.classname AS language
FROM ${openaire_db_name}.dataset p
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.dataset_oids purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_oids purge; /*EOS*/
CREATE TABLE ${stats_db_name}.dataset_oids STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, oids.ids AS oid
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.originalid) oids AS ids
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.dataset_pids purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_pids purge; /*EOS*/
CREATE TABLE ${stats_db_name}.dataset_pids STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
FROM ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.pid) pids AS ppid
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.dataset_topics purge;
DROP TABLE IF EXISTS ${stats_db_name}.dataset_topics purge; /*EOS*/
CREATE TABLE ${stats_db_name}.dataset_topics STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
FROM ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/

116
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4.sql
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@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics; /*EOS*/
--------------------------------------------------------
--------------------------------------------------------
-- Software table/view and Software related tables/views
@ -5,72 +7,74 @@
--------------------------------------------------------
-- Software temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.software_tmp purge;
CREATE TABLE ${stats_db_name}.software_tmp
(
id STRING,
title STRING,
publisher STRING,
journal STRING,
date STRING,
year STRING,
bestlicence STRING,
embargo_end_date STRING,
delayed BOOLEAN,
authors INT,
source STRING,
abstract BOOLEAN,
type STRING
DROP TABLE IF EXISTS ${stats_db_name}.software purge; /*EOS*/
CREATE TABLE ${stats_db_name}.software stored as parquet as
with soft_pr as (
select soft.id as soft_id, case when (to_date(soft.dateofacceptance.value) > to_date( pj.enddate.value)) then true else false end as delayed
from ${openaire_db_name}.software soft
join ${openaire_db_name}.relation rel
on reltype = 'resultProject' and relclass = 'isProducedBy' and rel.source=soft.id
and rel.datainfo.deletedbyinference = false and rel.datainfo.invisible = false
join ${openaire_db_name}.project pj on pj.id=rel.target and pj.datainfo.deletedbyinference = false and pj.datainfo.invisible = false
where soft.datainfo.deletedbyinference = false and soft.datainfo.invisible = false
),
soft_delayed as (
select soft_id, max(delayed) as delayed
from soft_pr
group by soft_id
)
clustered by (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
select /*+ COALESCE(100) */
substr(soft.id, 4) as id,
soft.title[0].value as title,
soft.publisher.value as publisher,
cast(null as string) as journal,
soft.dateofacceptance.value as date,
date_format(soft.dateofacceptance.value, 'yyyy') as year,
soft.bestaccessright.classname as bestlicence,
soft.embargoenddate.value as embargo_end_date,
coalesce(soft_delayed.delayed, false) as delayed, -- It's delayed, when the software was published after the end of the project.
size(soft.author) as authors,
concat_ws('\u003B', soft.source.value) as source,
case when size(soft.description) > 0 then true else false end as abstract,
'software' as type
from ${openaire_db_name}.software soft
left outer join soft_delayed on soft.id=soft_delayed.soft_id
where soft.datainfo.deletedbyinference = false and soft.datainfo.invisible = false; /*EOS*/
INSERT INTO ${stats_db_name}.software_tmp
SELECT substr(s.id, 4) as id,
s.title[0].value AS title,
s.publisher.value AS publisher,
CAST(NULL AS string) AS journal,
s.dateofacceptance.value AS DATE,
date_format(s.dateofacceptance.value, 'yyyy') AS YEAR,
s.bestaccessright.classname AS bestlicence,
s.embargoenddate.value AS embargo_end_date,
FALSE AS delayed,
SIZE(s.author) AS authors,
concat_ws('\u003B', s.source.value) AS source,
CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'software' as type
from ${openaire_db_name}.software s
where s.datainfo.deletedbyinference = false and s.datainfo.invisible=false;
DROP TABLE IF EXISTS ${stats_db_name}.software_citations purge;
DROP TABLE IF EXISTS ${stats_db_name}.software_citations purge; /*EOS*/
CREATE TABLE ${stats_db_name}.software_citations STORED AS PARQUET AS
SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS cites
SELECT /*+ COALESCE(100) */ substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS cites
FROM ${openaire_db_name}.software s
LATERAL VIEW explode(s.extrainfo) citations as citation
where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
and s.datainfo.deletedbyinference = false and s.datainfo.invisible=false;
and s.datainfo.deletedbyinference = false and s.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.software_classifications purge;
DROP TABLE IF EXISTS ${stats_db_name}.software_classifications purge; /*EOS*/
CREATE TABLE ${stats_db_name}.software_classifications STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, instancetype.classname AS type
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, instancetype.classname AS type
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.software_concepts purge; /*EOS*/
CREATE TABLE ${stats_db_name}.software_concepts STORED AS PARQUET AS
SELECT substr(p.id, 4) as id, case
SELECT /*+ COALESCE(100) */ substr(p.id, 4) as id, case
when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.context) contexts AS context
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.software_datasources purge;
DROP TABLE IF EXISTS ${stats_db_name}.software_datasources purge; /*EOS*/
CREATE TABLE ${stats_db_name}.software_datasources STORED AS PARQUET AS
SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource
SELECT /*+ COALESCE(100) */ p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.software p
@ -79,35 +83,35 @@ FROM (
LEFT OUTER JOIN (
SELECT substr(d.id, 4) id
FROM ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference = false and d.datainfo.invisible=false) d ON p.datasource = d.id;
WHERE d.datainfo.deletedbyinference = false and d.datainfo.invisible=false) d ON p.datasource = d.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.software_languages purge;
DROP TABLE IF EXISTS ${stats_db_name}.software_languages purge; /*EOS*/
CREATE TABLE ${stats_db_name}.software_languages STORED AS PARQUET AS
select substr(p.id, 4) AS id, p.language.classname AS language
select /*+ COALESCE(100) */ substr(p.id, 4) AS id, p.language.classname AS language
FROM ${openaire_db_name}.software p
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.software_oids purge;
DROP TABLE IF EXISTS ${stats_db_name}.software_oids purge; /*EOS*/
CREATE TABLE ${stats_db_name}.software_oids STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, oids.ids AS oid
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.originalid) oids AS ids
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.software_pids purge;
DROP TABLE IF EXISTS ${stats_db_name}.software_pids purge; /*EOS*/
CREATE TABLE ${stats_db_name}.software_pids STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.pid) pids AS ppid
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.software_topics purge;
DROP TABLE IF EXISTS ${stats_db_name}.software_topics purge; /*EOS*/
CREATE TABLE ${stats_db_name}.software_topics STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/

118
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5.sql
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@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics; /*EOS*/
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-- Otherresearchproduct table/view and Otherresearchproduct related tables/views
@ -5,101 +7,103 @@
--------------------------------------------------------------------------------
-- Otherresearchproduct temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct purge; /*EOS*/
CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp
(
id STRING,
title STRING,
publisher STRING,
journal STRING,
date STRING,
year STRING,
bestlicence STRING,
embargo_end_date STRING,
delayed BOOLEAN,
authors INT,
source STRING,
abstract BOOLEAN,
type STRING
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
CREATE TABLE ${stats_db_name}.otherresearchproduct stored as parquet as
with other_pr as (
select other.id as other_id, case when (to_date(other.dateofacceptance.value) > to_date( pj.enddate.value)) then true else false end as delayed
from ${openaire_db_name}.otherresearchproduct other
join ${openaire_db_name}.relation rel
on reltype = 'resultProject' and relclass = 'isProducedBy' and rel.source=other.id
and rel.datainfo.deletedbyinference = false and rel.datainfo.invisible = false
join ${openaire_db_name}.project pj on pj.id=rel.target and pj.datainfo.deletedbyinference = false and pj.datainfo.invisible = false
where other.datainfo.deletedbyinference = false and other.datainfo.invisible = false
),
other_delayed as (
select other_id, max(delayed) as delayed
from other_pr
group by other_id
)
select /*+ COALESCE(100) */
substr(other.id, 4) as id,
other.title[0].value as title,
other.publisher.value as publisher,
cast(null as string) as journal,
other.dateofacceptance.value as date,
date_format(other.dateofacceptance.value, 'yyyy') as year,
other.bestaccessright.classname as bestlicence,
other.embargoenddate.value as embargo_end_date,
false as delayed,
size(other.author) as authors,
concat_ws('\u003B', other.source.value) as source,
case when size(other.description) > 0 then true else false end as abstract,
'other' as type
from ${openaire_db_name}.otherresearchproduct other
left outer join other_delayed on other.id=other_delayed.other_id
where other.datainfo.deletedbyinference = false and other.datainfo.invisible = false; /*EOS*/
INSERT INTO ${stats_db_name}.otherresearchproduct_tmp
SELECT substr(o.id, 4) AS id,
o.title[0].value AS title,
o.publisher.value AS publisher,
CAST(NULL AS string) AS journal,
o.dateofacceptance.value AS DATE,
date_format(o.dateofacceptance.value, 'yyyy') AS year,
o.bestaccessright.classname AS bestlicence,
o.embargoenddate.value as embargo_end_date,
FALSE AS delayed,
SIZE(o.author) AS authors,
concat_ws('\u003B', o.source.value) AS source,
CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'other' AS type
FROM ${openaire_db_name}.otherresearchproduct o
WHERE o.datainfo.deletedbyinference = FALSE and o.datainfo.invisible=false;
-- Otherresearchproduct_citations
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_citations purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_citations purge; /*EOS*/
CREATE TABLE ${stats_db_name}.otherresearchproduct_citations STORED AS PARQUET AS
SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS cites
SELECT /*+ COALESCE(100) */ substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS cites
FROM ${openaire_db_name}.otherresearchproduct o LATERAL VIEW explode(o.extrainfo) citations AS citation
WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
and o.datainfo.deletedbyinference = false and o.datainfo.invisible=false;
and o.datainfo.deletedbyinference = false and o.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_classifications purge; /*EOS*/
CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, instancetype.classname AS type
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, instancetype.classname AS type
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_concepts purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_concepts purge; /*EOS*/
CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts STORED AS PARQUET AS
SELECT substr(p.id, 4) as id, case
SELECT /*+ COALESCE(100) */ substr(p.id, 4) as id, case
when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_datasources purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_datasources purge; /*EOS*/
CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources STORED AS PARQUET AS
SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource
SELECT /*+ COALESCE(100) */ p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource
FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false) p
LEFT OUTER JOIN(SELECT substr(d.id, 4) id
LEFT OUTER JOIN (SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference = false and d.datainfo.invisible=false) d on p.datasource = d.id;
WHERE d.datainfo.deletedbyinference = false and d.datainfo.invisible=false) d on p.datasource = d.id; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_languages purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_languages purge; /*EOS*/
CREATE TABLE ${stats_db_name}.otherresearchproduct_languages STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, p.language.classname AS language
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, p.language.classname AS language
FROM ${openaire_db_name}.otherresearchproduct p
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_oids purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_oids purge; /*EOS*/
CREATE TABLE ${stats_db_name}.otherresearchproduct_oids STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, oids.ids AS oid
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_pids purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_pids purge; /*EOS*/
CREATE TABLE ${stats_db_name}.otherresearchproduct_pids STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_topics purge;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_topics purge; /*EOS*/
CREATE TABLE ${stats_db_name}.otherresearchproduct_topics STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference = false and p.datainfo.invisible=false; /*EOS*/

152
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@ -1,110 +1,120 @@
set mapred.job.queue.name=analytics; /*EOS*/
------------------------------------------------------
------------------------------------------------------
-- Project table/view and Project related tables/views
------------------------------------------------------
------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.project_oids purge;
DROP TABLE IF EXISTS ${stats_db_name}.project_oids purge; /*EOS*/
CREATE TABLE ${stats_db_name}.project_oids STORED AS PARQUET AS
SELECT substr(p.id, 4) AS id, oids.ids AS oid
SELECT /*+ COALESCE(100) */ substr(p.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids
where p.datainfo.deletedbyinference=false and p.datainfo.invisible=false;
where p.datainfo.deletedbyinference=false and p.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.project_organizations purge;
DROP TABLE IF EXISTS ${stats_db_name}.project_organizations purge; /*EOS*/
CREATE TABLE ${stats_db_name}.project_organizations STORED AS PARQUET AS
SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization
SELECT /*+ COALESCE(100) */ substr(r.source, 4) AS id, substr(r.target, 4) AS organization
from ${openaire_db_name}.relation r
WHERE r.reltype = 'projectOrganization' and r.source like '40|%'
and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false;
and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.project_results purge;
DROP TABLE IF EXISTS ${stats_db_name}.project_results purge; /*EOS*/
CREATE TABLE ${stats_db_name}.project_results STORED AS PARQUET AS
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result, r.datainfo.provenanceaction.classname as provenance
SELECT /*+ COALESCE(100) */ substr(r.target, 4) AS id, substr(r.source, 4) AS result, r.datainfo.provenanceaction.classname as provenance
FROM ${openaire_db_name}.relation r
WHERE r.reltype = 'resultProject' and r.target like '40|%'
and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false;
and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.project_classification purge;
DROP TABLE IF EXISTS ${stats_db_name}.project_classification purge; /*EOS*/
create table ${stats_db_name}.project_classification STORED AS PARQUET as
select substr(p.id, 4) as id, class.h2020programme.code, class.level1, class.level2, class.level3
select /*+ COALESCE(100) */ substr(p.id, 4) as id, class.h2020programme.code, class.level1, class.level2, class.level3
from ${openaire_db_name}.project p
lateral view explode(p.h2020classification) classifs as class
where p.datainfo.deletedbyinference=false and p.datainfo.invisible=false and class.h2020programme is not null;
where p.datainfo.deletedbyinference=false and p.datainfo.invisible=false and class.h2020programme is not null; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.project_tmp purge;
DROP TABLE IF EXISTS ${stats_db_name}.project purge; /*EOS*/
CREATE TABLE ${stats_db_name}.project_tmp
(
id STRING,
acronym STRING,
title STRING,
funder STRING,
funding_lvl0 STRING,
funding_lvl1 STRING,
funding_lvl2 STRING,
ec39 STRING,
type STRING,
startdate STRING,
enddate STRING,
start_year INT,
end_year INT,
duration INT,
haspubs STRING,
numpubs INT,
daysforlastpub INT,
delayedpubs INT,
callidentifier STRING,
code STRING,
totalcost FLOAT,
fundedamount FLOAT,
currency STRING
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
CREATE TABLE ${stats_db_name}.project stored as parquet as
with pr_pub as (
select pr.id as pr_id, pub.id as pub_id,
(case when datediff(pub.dt_dateofacceptance, pr.dt_enddate) > 0 then true else false end) as delayed,
max(datediff(pub.dt_dateofacceptance, pr.dt_enddate)) as daysForlastPub
from (select id, to_date(dateofacceptance.value) as dt_dateofacceptance from ${openaire_db_name}.publication
where datainfo.deletedbyinference = false and datainfo.invisible = false) pub
join ${openaire_db_name}.relation rel
on rel.reltype = 'resultProject' and rel.relclass = 'isProducedBy' and rel.source=pub.id
and rel.datainfo.deletedbyinference = false and rel.datainfo.invisible = false
join (select id, to_date(enddate.value) as dt_enddate from ${openaire_db_name}.project
where datainfo.deletedbyinference = false and datainfo.invisible = false) pr
on pr.id=rel.target
group by pr.id, pub.id, pub.dt_dateofacceptance, pr.dt_enddate
),
num_pubs_pr as (
select pr_id, count( distinct pub_id) as num_pubs
from pr_pub
group by pr_id
),
pub_delayed as (
select pr_id, pub_id, max(delayed) as delayed
from pr_pub
group by pr_id, pub_id
),
num_pub_delayed as (
select pr_id, count(distinct pub_id) as num_delayed
from pub_delayed
where delayed
group by pr_id
)
select /*+ COALESCE(100) */
substr(p.id, 4) as id,
p.acronym.value as acronym,
p.title.value as title,
xpath_string(p.fundingtree[0].value, '//funder/name') as funder,
xpath_string(p.fundingtree[0].value, '//funding_level_0/name') as funding_lvl0,
xpath_string(p.fundingtree[0].value, '//funding_level_1/name') as funding_lvl1,
xpath_string(p.fundingtree[0].value, '//funding_level_2/name') as funding_lvl2,
p.ecsc39.value as ec39,
p.contracttype.classname as type,
p.startdate.value as startdate,
p.enddate.value as enddate,
year(p.startdate.value) as start_year,
year(p.enddate.value) as end_year,
cast(months_between(p.enddate.value, p.startdate.value) as int) as duration,
case when pr_pub.pub_id is null then 'no' else 'yes' end as haspubs,
num_pubs_pr.num_pubs as numpubs,
pr_pub.daysForlastPub as daysForlastPub,
npd.num_delayed as delayedpubs,
p.callidentifier.value as callidentifier,
p.code.value as code,
p.totalcost as totalcost,
p.fundedamount as fundedamount,
p.currency.value as currency
from ${openaire_db_name}.project p
left outer join pr_pub on pr_pub.pr_id = p.id
left outer join num_pubs_pr on num_pubs_pr.pr_id = p.id
left outer join num_pub_delayed npd on npd.pr_id=p.id
where p.datainfo.deletedbyinference = false and p.datainfo.invisible = false; /*EOS*/
INSERT INTO ${stats_db_name}.project_tmp
SELECT substr(p.id, 4) AS id,
p.acronym.value AS acronym,
p.title.value AS title,
xpath_string(p.fundingtree[0].value, '//funder/name') AS funder,
xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0,
xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1,
xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2,
p.ecsc39.value AS ec39,
p.contracttype.classname AS type,
p.startdate.value AS startdate,
p.enddate.value AS enddate,
year(p.startdate.value) AS start_year,
year(p.enddate.value) AS end_year,
CAST(MONTHS_BETWEEN(p.enddate.value, p.startdate.value) AS INT) AS duration,
'no' AS haspubs,
0 AS numpubs,
0 AS daysforlastpub,
0 AS delayedpubs,
p.callidentifier.value AS callidentifier,
p.code.value AS code,
p.totalcost AS totalcost,
p.fundedamount AS fundedamount,
p.currency.value AS currency
FROM ${openaire_db_name}.project p
WHERE p.datainfo.deletedbyinference = false and p.datainfo.invisible=false;
DROP TABLE IF EXISTS ${stats_db_name}.funder purge;
DROP TABLE IF EXISTS ${stats_db_name}.funder purge; /*EOS*/
create table ${stats_db_name}.funder STORED AS PARQUET as
select distinct xpath_string(fund, '//funder/id') as id,
select /*+ COALESCE(100) */ distinct xpath_string(fund, '//funder/id') as id,
xpath_string(fund, '//funder/name') as name,
xpath_string(fund, '//funder/shortname') as shortname,
xpath_string(fundingtree[0].value, '//funder/jurisdiction') as country
from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund;
from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.project_organization_contribution purge;
DROP TABLE IF EXISTS ${stats_db_name}.project_organization_contribution purge; /*EOS*/
CREATE TABLE ${stats_db_name}.project_organization_contribution STORED AS PARQUET AS
SELECT distinct substr(r.source, 4) AS project, substr(r.target, 4) AS organization,
SELECT /*+ COALESCE(100) */ distinct substr(r.source, 4) AS project, substr(r.target, 4) AS organization,
properties[0].value contribution, properties[1].value currency
from ${openaire_db_name}.relation r
LATERAL VIEW explode (r.properties) properties
where properties[0].key='contribution' and r.reltype = 'projectOrganization' and r.source like '40|%'
and properties[0].value>0.0 and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false;
and properties[0].value>0.0 and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false; /*EOS*/

65
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View File

@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics; /*EOS*/
----------------------------------------------------
----------------------------------------------------
-- Result table/view and Result related tables/views
@ -7,16 +9,16 @@
-- Views on temporary tables that should be re-created in the end
CREATE OR REPLACE VIEW ${stats_db_name}.result as
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.publication_tmp
FROM ${stats_db_name}.publication
UNION ALL
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.software_tmp
FROM ${stats_db_name}.software
UNION ALL
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.dataset_tmp
FROM ${stats_db_name}.dataset
UNION ALL
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.otherresearchproduct_tmp;
FROM ${stats_db_name}.otherresearchproduct; /*EOS*/
-- Views on final tables
CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS
@ -30,7 +32,7 @@ SELECT *
FROM ${stats_db_name}.dataset_datasources
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_datasources;
FROM ${stats_db_name}.otherresearchproduct_datasources; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS
SELECT *
@ -43,7 +45,7 @@ SELECT *
FROM ${stats_db_name}.dataset_citations
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_citations;
FROM ${stats_db_name}.otherresearchproduct_citations; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS
SELECT *
@ -56,7 +58,7 @@ SELECT *
FROM ${stats_db_name}.dataset_classifications
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_classifications;
FROM ${stats_db_name}.otherresearchproduct_classifications; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS
SELECT *
@ -69,7 +71,7 @@ SELECT *
FROM ${stats_db_name}.dataset_concepts
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_concepts;
FROM ${stats_db_name}.otherresearchproduct_concepts; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS
SELECT *
@ -82,7 +84,7 @@ SELECT *
FROM ${stats_db_name}.dataset_languages
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_languages;
FROM ${stats_db_name}.otherresearchproduct_languages; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS
SELECT *
@ -95,7 +97,7 @@ SELECT *
FROM ${stats_db_name}.dataset_oids
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_oids;
FROM ${stats_db_name}.otherresearchproduct_oids; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS
SELECT *
@ -108,7 +110,7 @@ SELECT *
FROM ${stats_db_name}.dataset_pids
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_pids;
FROM ${stats_db_name}.otherresearchproduct_pids; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS
SELECT *
@ -121,37 +123,44 @@ SELECT *
FROM ${stats_db_name}.dataset_topics
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_topics;
FROM ${stats_db_name}.otherresearchproduct_topics; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_fos purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_fos_base_tmp purge; /*EOS*/
create table ${stats_db_name}.result_fos_base_tmp stored as parquet as
select /*+ COALESCE(100) */ id, topic from ${stats_db_name}.result_topics where type='Fields of Science and Technology classification'; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_fos purge; /*EOS*/
create table ${stats_db_name}.result_fos stored as parquet as
with
lvl1 as (select id, topic from ${stats_db_name}.result_topics where topic like '__ %' and type='Fields of Science and Technology classification'),
lvl2 as (select id, topic from ${stats_db_name}.result_topics where topic like '____ %' and type='Fields of Science and Technology classification'),
lvl3 as (select id, topic from ${stats_db_name}.result_topics where topic like '______ %' and type='Fields of Science and Technology classification'),
lvl4 as (select id, topic from ${stats_db_name}.result_topics where topic like '________ %' and type='Fields of Science and Technology classification')
select lvl1.id, lvl1.topic as lvl1, lvl2.topic as lvl2, lvl3.topic as lvl3, lvl4.topic as lvl4
lvl1 as (select * from ${stats_db_name}.result_fos_base_tmp where topic like '__ %'),
lvl2 as (select * from ${stats_db_name}.result_fos_base_tmp where topic like '____ %'),
lvl3 as (select * from ${stats_db_name}.result_fos_base_tmp where topic like '______ %'),
lvl4 as (select * from ${stats_db_name}.result_fos_base_tmp where topic like '________ %')
select /*+ COALESCE(100) */ lvl1.id, lvl1.topic as lvl1, lvl2.topic as lvl2, lvl3.topic as lvl3, lvl4.topic as lvl4
from lvl1
join lvl2 on lvl1.id=lvl2.id and substr(lvl2.topic, 1, 2)=substr(lvl1.topic, 1, 2)
join lvl3 on lvl3.id=lvl1.id and substr(lvl3.topic, 1, 4)=substr(lvl2.topic, 1, 4)
join lvl4 on lvl4.id=lvl1.id and substr(lvl4.topic, 1, 6)=substr(lvl3.topic, 1, 6);
join lvl2 on lvl1.id=lvl2.id and substr(lvl2.topic, 1, 2)=substr(lvl1.topic, 1, 2)
join lvl3 on lvl3.id=lvl1.id and substr(lvl3.topic, 1, 4)=substr(lvl2.topic, 1, 4)
join lvl4 on lvl4.id=lvl1.id and substr(lvl4.topic, 1, 6)=substr(lvl3.topic, 1, 6); /*EOS*/
DROP TABLE ${stats_db_name}.result_fos_base_tmp purge; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_organization purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_organization purge; /*EOS*/
CREATE TABLE ${stats_db_name}.result_organization STORED AS PARQUET AS
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
SELECT /*+ COALESCE(100) */ substr(r.target, 4) AS id, substr(r.source, 4) AS organization
FROM ${openaire_db_name}.relation r
WHERE r.reltype = 'resultOrganization'
and r.target like '50|%'
and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false;
and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.result_projects purge;
DROP TABLE IF EXISTS ${stats_db_name}.result_projects purge; /*EOS*/
CREATE TABLE ${stats_db_name}.result_projects STORED AS PARQUET AS
select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend, pr.provenance as provenance
select /*+ COALESCE(100) */ pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend, pr.provenance as provenance
FROM ${stats_db_name}.result r
JOIN ${stats_db_name}.project_results pr ON r.id = pr.result
JOIN ${stats_db_name}.project_tmp p ON p.id = pr.id;
JOIN ${stats_db_name}.project p ON p.id = pr.id; /*EOS*/

123
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@ -1,3 +1,5 @@
set mapred.job.queue.name=analytics; /*EOS*/
-- noinspection SqlNoDataSourceInspectionForFile
------------------------------------------------------------
@ -5,108 +7,65 @@
-- Datasource table/view and Datasource related tables/views
------------------------------------------------------------
------------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp purge;
DROP TABLE IF EXISTS ${stats_db_name}.datasource purge; /*EOS*/
CREATE TABLE ${stats_db_name}.datasource_tmp
(
`id` string,
`name` STRING,
`type` STRING,
`dateofvalidation` STRING,
`yearofvalidation` string,
`harvested` BOOLEAN,
`piwik_id` INT,
`latitude` STRING,
`longitude` STRING,
`websiteurl` STRING,
`compatibility` STRING,
issn_printed STRING,
issn_online STRING
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
CREATE TABLE ${stats_db_name}.datasource stored as parquet as
with piwik_datasource as (
select id, split(originalidd, '\\:')[1] as piwik_id
from ${openaire_db_name}.datasource
lateral view explode(originalid) temp as originalidd
where originalidd like "piwik:%"
)
select /*+ COALESCE(100) */
substr(dtrce.id, 4) as id,
case when dtrce.officialname.value='Unknown Repository' then 'Other' else dtrce.officialname.value end as name,
dtrce.datasourcetype.classname as type,
dtrce.dateofvalidation.value as dateofvalidation,
case when dtrce.dateofvalidation.value='-1' then null else date_format(dtrce.dateofvalidation.value, 'yyyy') end as yearofvalidation,
case when res.d_id is null then false else true end as harvested,
case when piwik_d.piwik_id is null then 0 else piwik_d.piwik_id end as piwik_id,
dtrce.latitude.value as latitude,
dtrce.longitude.value as longitude,
dtrce.websiteurl.value as websiteurl,
dtrce.openairecompatibility.classid as compatibility,
dtrce.journal.issnprinted as issn_printed,
dtrce.journal.issnonline as issn_online
from ${openaire_db_name}.datasource dtrce
left outer join (select inst.hostedby.key as d_id from ${openaire_db_name}.result lateral view outer explode (instance) insts as inst) res on res.d_id=dtrce.id
left outer join piwik_datasource piwik_d on piwik_d.id=dtrce.id
where dtrce.datainfo.deletedbyinference = false and dtrce.datainfo.invisible = false; /*EOS*/
-- Insert statement that takes into account the piwik_id of the openAIRE graph
INSERT INTO ${stats_db_name}.datasource_tmp
SELECT substr(d1.id, 4) AS id,
officialname.value AS name,
datasourcetype.classname AS type,
dateofvalidation.value AS dateofvalidation,
date_format(d1.dateofvalidation.value, 'yyyy') AS yearofvalidation,
FALSE AS harvested,
CASE WHEN d2.piwik_id IS NULL THEN 0 ELSE d2.piwik_id END AS piwik_id,
d1.latitude.value AS latitude,
d1.longitude.value AS longitude,
d1.websiteurl.value AS websiteurl,
d1.openairecompatibility.classid AS compatibility,
d1.journal.issnprinted AS issn_printed,
d1.journal.issnonline AS issn_online
FROM ${openaire_db_name}.datasource d1
LEFT OUTER JOIN
(SELECT id, split(originalidd, '\\:')[1] as piwik_id
FROM ${openaire_db_name}.datasource
LATERAL VIEW EXPLODE(originalid) temp AS originalidd
WHERE originalidd like "piwik:%") AS d2
ON d1.id = d2.id
WHERE d1.datainfo.deletedbyinference = FALSE and d1.datainfo.invisible=false;
-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table.
-- Creating a temporary dual table that will be removed after the following insert
CREATE TABLE ${stats_db_name}.dual ( dummy CHAR(1));
INSERT INTO ${stats_db_name}.dual VALUES ('X');
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`,
`piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`, `issn_printed`, `issn_online`)
SELECT 'other',
'Other',
'Repository',
NULL,
NULL,
false,
0,
NULL,
NULL,
NULL,
'unknown',
null,
null
FROM ${stats_db_name}.dual
WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name = 'Unknown Repository');
DROP TABLE ${stats_db_name}.dual;
UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name = 'Unknown Repository';
UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation = '-1';
DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages purge;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages purge; /*EOS*/
CREATE TABLE ${stats_db_name}.datasource_languages STORED AS PARQUET AS
SELECT substr(d.id, 4) AS id, langs.languages AS language
SELECT /*+ COALESCE(100) */ substr(d.id, 4) AS id, langs.languages AS language
FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages
where d.datainfo.deletedbyinference=false and d.datainfo.invisible=false;
where d.datainfo.deletedbyinference=false and d.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids purge;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids purge; /*EOS*/
CREATE TABLE ${stats_db_name}.datasource_oids STORED AS PARQUET AS
SELECT substr(d.id, 4) AS id, oids.ids AS oid
SELECT /*+ COALESCE(100) */ substr(d.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids
where d.datainfo.deletedbyinference=false and d.datainfo.invisible=false;
where d.datainfo.deletedbyinference=false and d.datainfo.invisible=false; /*EOS*/
DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations purge;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations purge; /*EOS*/
CREATE TABLE ${stats_db_name}.datasource_organizations STORED AS PARQUET AS
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
SELECT /*+ COALESCE(100) */ substr(r.target, 4) AS id, substr(r.source, 4) AS organization
FROM ${openaire_db_name}.relation r
WHERE r.reltype = 'datasourceOrganization' and r.datainfo.deletedbyinference = false and r.source like '20|%' and r.datainfo.invisible=false;
WHERE r.reltype = 'datasourceOrganization' and r.datainfo.deletedbyinference = false and r.source like '20|%' and r.datainfo.invisible=false; /*EOS*/
-- datasource sources:
-- where the datasource info have been collected from.
DROP TABLE IF EXISTS ${stats_db_name}.datasource_sources purge;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_sources purge; /*EOS*/
create table if not exists ${stats_db_name}.datasource_sources STORED AS PARQUET AS
select substr(d.id, 4) as id, substr(cf.key, 4) as datasource
select /*+ COALESCE(100) */ substr(d.id, 4) as id, substr(cf.key, 4) as datasource
from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf
where d.datainfo.deletedbyinference = false and d.datainfo.invisible=false;
where d.datainfo.deletedbyinference = false and d.datainfo.invisible=false; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS
SELECT datasource AS id, id AS result
FROM ${stats_db_name}.result_datasources;
FROM ${stats_db_name}.result_datasources; /*EOS*/

12
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9.sql
View File

@ -1,22 +1,24 @@
set mapred.job.queue.name=analytics; /*EOS*/
----------------------------------------------------------------
----------------------------------------------------------------
-- Organization table/view and Organization related tables/views
----------------------------------------------------------------
----------------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.organization purge;
DROP TABLE IF EXISTS ${stats_db_name}.organization purge; /*EOS*/
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization STORED AS PARQUET AS
SELECT substr(o.id, 4) as id,
SELECT /*+ COALESCE(100) */ substr(o.id, 4) as id,
o.legalname.value as name,
o.legalshortname.value as legalshortname,
o.country.classid as country
FROM ${openaire_db_name}.organization o
WHERE o.datainfo.deletedbyinference = FALSE and o.datainfo.invisible = FALSE;
WHERE o.datainfo.deletedbyinference = FALSE and o.datainfo.invisible = FALSE; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS
SELECT organization AS id, id AS datasource
FROM ${stats_db_name}.datasource_organizations;
FROM ${stats_db_name}.datasource_organizations; /*EOS*/
CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS
SELECT id AS project, organization as id
FROM ${stats_db_name}.project_organizations;
FROM ${stats_db_name}.project_organizations; /*EOS*/

464
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml
View File

@ -150,190 +150,367 @@
</decision>
<kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}
${wf:actionData(wf:lastErrorNode())['stackTrace']}]</message>
</kill>
<action name="Step1">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step1.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step1</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step1.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step2"/>
<error to="Kill"/>
</action>
<action name="Step2">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step2.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step2</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step3"/>
<error to="Kill"/>
</action>
<action name="Step3">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step3.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step3</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step3.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step4"/>
<error to="Kill"/>
</action>
<action name="Step4">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step4.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step4</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step5"/>
<error to="Kill"/>
</action>
<action name="Step5">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step5.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step5</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step6"/>
<error to="Kill"/>
</action>
<action name="Step6">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step6.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step6</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step7"/>
<error to="Kill"/>
</action>
<action name="Step7">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step7.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step7</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step8"/>
<error to="Kill"/>
</action>
<action name="Step8">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step8.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step8</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step9"/>
<error to="Kill"/>
</action>
<action name="Step9">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step9.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step9</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step10"/>
<error to="Kill"/>
</action>
<action name="Step10">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step10.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
<param>external_stats_db_name=${external_stats_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step10</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
<arg>--external_stats_db_name</arg><arg>${external_stats_db_name}</arg>
</spark>
<ok to="Step11"/>
<error to="Kill"/>
</action>
<action name="Step11">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step11.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
<param>external_stats_db_name=${external_stats_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step11</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step11.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
<arg>--external_stats_db_name</arg><arg>${external_stats_db_name}</arg>
</spark>
<ok to="Step12"/>
<error to="Kill"/>
</action>
<action name="Step12">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step12.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step12</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step13"/>
<error to="Kill"/>
</action>
<action name="Step13">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step13.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step13</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step14"/>
<error to="Kill"/>
</action>
<action name="Step14">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step14.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step14</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step15"/>
<error to="Kill"/>
</action>
<action name="Step15">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step15.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step15</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step15_5"/>
<error to="Kill"/>
</action>
<action name="Step15_5">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step15_5.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
<param>external_stats_db_name=${external_stats_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step15_5</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15_5.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
<arg>--external_stats_db_name</arg><arg>${external_stats_db_name}</arg>
</spark>
<ok to="Contexts"/>
<error to="Kill"/>
</action>
<action name="Contexts">
<shell xmlns="uri:oozie:shell-action:0.1">
<shell xmlns="uri:oozie:shell-action:0.3">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>contexts.sh</exec>
@ -380,29 +557,51 @@
</action>
<action name="Step16_1-definitions">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step16_1-definitions.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step16_1-definitions</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_1-definitions.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step16_5"/>
<error to="Kill"/>
</action>
<action name="Step16_5">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step16_5.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step16_5</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_5.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--openaire_db_name</arg><arg>${openaire_db_name}</arg>
</spark>
<ok to="Step19-finalize"/>
<error to="Kill"/>
</action>
<action name="Step19-finalize">
<shell xmlns="uri:oozie:shell-action:0.1">
<shell xmlns="uri:oozie:shell-action:0.3">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>finalizedb.sh</exec>
@ -415,7 +614,7 @@
</action>
<action name="step20-createMonitorDB">
<shell xmlns="uri:oozie:shell-action:0.1">
<shell xmlns="uri:oozie:shell-action:0.3">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>monitor.sh</exec>
@ -448,7 +647,7 @@
<!-- </action>-->
<action name="step21-createObservatoryDB-pre">
<shell xmlns="uri:oozie:shell-action:0.1">
<shell xmlns="uri:oozie:shell-action:0.3">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>observatory-pre.sh</exec>
@ -462,18 +661,29 @@
</action>
<action name="step21-createObservatoryDB">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step21-createObservatoryDB.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>observatory_db_name=${observatory_db_name}</param>
</hive2>
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Step21-createObservatoryDB</name>
<class>eu.dnetlib.dhp.oozie.RunSQLSparkJob</class>
<jar>dhp-stats-update-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
${sparkClusterOpts}
${sparkResourceOpts}
${sparkApplicationOpts}
</spark-opts>
<arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
<arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step21-createObservatoryDB.sql</arg>
<arg>--stats_db_name</arg><arg>${stats_db_name}</arg>
<arg>--observatory_db_name</arg><arg>${observatory_db_name}</arg>
</spark>
<ok to="step21-createObservatoryDB-post"/>
<error to="Kill"/>
</action>
<action name="step21-createObservatoryDB-post">
<shell xmlns="uri:oozie:shell-action:0.1">
<shell xmlns="uri:oozie:shell-action:0.3">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>observatory-post.sh</exec>
@ -486,7 +696,7 @@
</action>
<action name="step22-copyDataToImpalaCluster">
<shell xmlns="uri:oozie:shell-action:0.1">
<shell xmlns="uri:oozie:shell-action:0.3">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>copyDataToImpalaCluster.sh</exec>
@ -505,7 +715,7 @@
</action>
<action name="step22a-createPDFsAggregated">
<shell xmlns="uri:oozie:shell-action:0.1">
<shell xmlns="uri:oozie:shell-action:0.3">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>createPDFsAggregated.sh</exec>
@ -521,7 +731,7 @@
</action>
<action name="step23-finalizeImpalaCluster">
<shell xmlns="uri:oozie:shell-action:0.1">
<shell xmlns="uri:oozie:shell-action:0.3">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>finalizeImpalaCluster.sh</exec>
@ -540,7 +750,7 @@
</action>
<action name="Step24-updateCache">
<shell xmlns="uri:oozie:shell-action:0.1">
<shell xmlns="uri:oozie:shell-action:0.3">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>updateCache.sh</exec>