lsmyrnaios
/
dnet-hadoop
forked from D-Net/dnet-hadoop
1
0
Fork 0
Code Pull Requests Activity

Merge pull request '[stats wf] latest version of indicators + added FOS classification' (#232) from antonis.lempesis/dnet-hadoop:beta into beta 

Reviewed-on: D-Net/dnet-hadoop#232
This commit is contained in:
Claudio Atzori 2022-08-02 12:57:15 +02:00
parent 209c7e9dab 1778d40c40
commit 27681cf6bf
4 changed files with 734 additions and 288 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

803
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql
View File

@ -1,4 +1,4 @@
---- Sprint 1 ----
-- Sprint 1 ----
create table indi_pub_green_oa stored as parquet as
select distinct p.id, coalesce(green_oa, 0) as green_oa
from publication p
@ -22,7 +22,8 @@ select p.id, 1 as grey_lit
from publication p
join result_classifications rt on rt.id = p.id
where rt.type not in ('Article','Part of book or chapter of book','Book','Doctoral thesis','Master thesis','Data Paper', 'Thesis', 'Bachelor thesis', 'Conference object') and
not exists (select 1 from result_classifications rc where type ='Other literature type' and rc.id=p.id)) tmp on p.id=tmp.id;
not exists (select 1 from result_classifications rc where type ='Other literature type'
and rc.id=p.id)) tmp on p.id=tmp.id;
compute stats indi_pub_grey_lit;
@ -36,7 +37,8 @@ where pidtype='Digital Object Identifier' and d.name ='Crossref') tmp
on tmp.id=p.id;
compute stats indi_pub_doi_from_crossref;
---- Sprint 2 ----
-- Sprint 2 ----
create table indi_result_has_cc_licence stored as parquet as
select distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license
from result r
@ -82,31 +84,61 @@ on r.id= tmp.id;
compute stats indi_funded_result_with_fundref;
-- create table indi_result_org_country_collab stored as parquet as
-- with tmp as
-- (select o.id as id, o.country , ro.id as result,r.type from organization o
-- join result_organization ro on o.id=ro.organization
-- join result r on r.id=ro.id where o.country <> 'UNKNOWN')
-- select o1.id org1,o2.country country2, o1.type, count(distinct o1.result) as collaborations
-- from tmp as o1
-- join tmp as o2 on o1.result=o2.result
-- where o1.id<>o2.id and o1.country<>o2.country
-- group by o1.id, o1.type,o2.country;
--
-- compute stats indi_result_org_country_collab;
create table indi_result_org_collab stored as parquet as
select o1.organization org1, o2.organization org2, count(distinct o1.id) as collaborations
from result_organization as o1
join result_organization as o2 on o1.id=o2.id and o1.organization!=o2.organization
group by o1.organization, o2.organization;
-- create table indi_result_org_collab stored as parquet as
-- with tmp as
-- (select o.id, ro.id as result,r.type from organization o
-- join result_organization ro on o.id=ro.organization
-- join result r on r.id=ro.id)
-- select o1.id org1,o2.id org2, o1.type, count(distinct o1.result) as collaborations
-- from tmp as o1
-- join tmp as o2 on o1.result=o2.result
-- where o1.id<>o2.id
-- group by o1.id, o2.id, o1.type;
--
-- compute stats indi_result_org_collab;
compute stats indi_result_org_collab;
create table indi_result_org_country_collab stored as parquet as
with tmp as
(select o.id as id, o.country , ro.id as result,r.type from organization o
join result_organization ro on o.id=ro.organization
join result r on r.id=ro.id where o.country <> 'UNKNOWN')
select o1.id org1,o2.country country2, o1.type, count(distinct o1.result) as collaborations
from tmp as o1
join tmp as o2 on o1.result=o2.result
where o1.id<>o2.id and o1.country<>o2.country
group by o1.id, o1.type,o2.country;
compute stats indi_result_org_country_collab;
create table indi_result_org_collab stored as parquet as
with tmp as
(select o.id, ro.id as result,r.type from organization o
join result_organization ro on o.id=ro.organization
join result r on r.id=ro.id)
select o1.id org1,o2.id org2, o1.type, count(distinct o1.result) as collaborations
from tmp as o1
join tmp as o2 on o1.result=o2.result
where o1.id<>o2.id
group by o1.id, o2.id, o1.type;
compute stats indi_result_org_collab;
create table indi_project_collab_org stored as parquet as
select o1.id org1,o2.id org2, count(distinct o1.project) as collaborations
from organization_projects as o1
join organization_projects as o2 on o1.project=o2.project
where o1.id!=o2.id
group by o1.id, o2.id;
compute stats indi_project_collab_org;
create table indi_project_collab_org_country stored as parquet as
with tmp as
(select o.id organization, o.country , ro.project as project from organization o
join organization_projects ro on o.id=ro.id
and o.country <> 'UNKNOWN')
select o1.organization org1,o2.country country2, count(distinct o1.project) as collaborations
from tmp as o1
join tmp as o2 on o1.project=o2.project
where o1.organization<>o2.organization and o1.country<>o2.country
group by o1.organization, o2.country;
compute stats indi_project_collab_org_country;
create table indi_funder_country_collab stored as parquet as
with tmp as (select funder, project, country from organization_projects op
@ -125,7 +157,7 @@ create table indi_result_country_collab stored as parquet as
with tmp as
(select country, ro.id as result,r.type from organization o
join result_organization ro on o.id=ro.organization
join result r on r.id=ro.id)
join result r on r.id=ro.id where country <> 'UNKNOWN')
select o1.country country1, o2.country country2, o1.type, count(distinct o1.result) as collaborations
from tmp as o1
join tmp as o2 on o1.result=o2.result
@ -182,176 +214,178 @@ where d.type like '%Journal%' and ri.accessright='Closed Access' and
on tmp.id=ri.id;
compute stats indi_pub_closed_other_open;
---- Sprint 5 ----
create table indi_result_no_of_copies stored as parquet as
select id, count(id) as number_of_copies from result_instance group by id;
compute stats indi_result_no_of_copies;
---- Sprint 6 ----
create table indi_pub_gold_oa stored as parquet as
WITH gold_oa AS (
SELECT issn_l, journal_is_in_doaj,journal_is_oa, issn_1 as issn
FROM stats_ext.oa_journals
WHERE issn_1 != ""
UNION ALL
SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_2 as issn
FROM stats_ext.oa_journals
WHERE issn_2 != "" ),
issn AS (
SELECT * FROM
(SELECT id, issn_printed as issn
FROM datasource WHERE issn_printed IS NOT NULL
UNION
SELECT id, issn_online as issn
FROM datasource WHERE issn_online IS NOT NULL) as issn
WHERE LENGTH(issn) > 7)
SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
FROM publication_datasources pd
LEFT OUTER JOIN (
SELECT pd.id, 1 as is_gold FROM publication_datasources pd
JOIN issn on issn.id=pd.datasource
JOIN gold_oa on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
--create table indi_pub_gold_oa stored as parquet as
--WITH gold_oa AS (
-- SELECT issn_l, journal_is_in_doaj,journal_is_oa, issn_1 as issn
-- FROM stats_ext.oa_journals
-- WHERE issn_1 != ""
-- UNION ALL
-- SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_2 as issn
-- FROM stats_ext.oa_journals
-- WHERE issn_2 != "" ),
--issn AS (
-- SELECT * FROM
-- (SELECT id, issn_printed as issn
-- FROM datasource WHERE issn_printed IS NOT NULL
-- UNION
-- SELECT id, issn_online as issn
-- FROM datasource WHERE issn_online IS NOT NULL) as issn
-- WHERE LENGTH(issn) > 7)
--SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
--FROM publication_datasources pd
--LEFT OUTER JOIN (
-- SELECT pd.id, 1 as is_gold FROM publication_datasources pd
-- JOIN issn on issn.id=pd.datasource
-- JOIN gold_oa on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
compute stats indi_pub_gold_oa;
--compute stats indi_pub_gold_oa;
--
--create table indi_datasets_gold_oa stored as parquet as
--WITH gold_oa AS (
-- SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_1 as issn
-- FROM stats_ext.oa_journals
-- WHERE issn_1 != ""
-- UNION
-- ALL SELECT issn_l,journal_is_in_doaj,journal_is_oa,issn_2 as issn
-- FROM stats_ext.oa_journals
-- WHERE issn_2 != "" ),
--issn AS (
-- SELECT *
-- FROM (
-- SELECT id,issn_printed as issn
-- FROM datasource
-- WHERE issn_printed IS NOT NULL
-- UNION
-- SELECT id, issn_online as issn
-- FROM datasource
-- WHERE issn_online IS NOT NULL ) as issn
-- WHERE LENGTH(issn) > 7)
--SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
--FROM dataset_datasources pd
--LEFT OUTER JOIN (
-- SELECT pd.id, 1 as is_gold FROM dataset_datasources pd
-- JOIN issn on issn.id=pd.datasource
-- JOIN gold_oa on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
--
--compute stats indi_datasets_gold_oa;
create table indi_datasets_gold_oa stored as parquet as
WITH gold_oa AS (
SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_1 as issn
FROM stats_ext.oa_journals
WHERE issn_1 != ""
UNION
ALL SELECT issn_l,journal_is_in_doaj,journal_is_oa,issn_2 as issn
FROM stats_ext.oa_journals
WHERE issn_2 != "" ),
issn AS (
SELECT *
FROM (
SELECT id,issn_printed as issn
FROM datasource
WHERE issn_printed IS NOT NULL
UNION
SELECT id, issn_online as issn
FROM datasource
WHERE issn_online IS NOT NULL ) as issn
WHERE LENGTH(issn) > 7)
SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
FROM dataset_datasources pd
LEFT OUTER JOIN (
SELECT pd.id, 1 as is_gold FROM dataset_datasources pd
JOIN issn on issn.id=pd.datasource
JOIN gold_oa on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
compute stats indi_datasets_gold_oa;
create table indi_software_gold_oa stored as parquet as
WITH gold_oa AS (
SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_1 as issn
FROM stats_ext.oa_journals
WHERE issn_1 != ""
UNION
ALL SELECT issn_l,journal_is_in_doaj,journal_is_oa,issn_2 as issn
FROM stats_ext.oa_journals
WHERE issn_2 != "" ),
issn AS (
SELECT *
FROM (
SELECT id,issn_printed as issn
FROM datasource
WHERE issn_printed IS NOT NULL
UNION
SELECT id, issn_online as issn
FROM datasource
WHERE issn_online IS NOT NULL ) as issn
WHERE LENGTH(issn) > 7)
SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
FROM software_datasources pd
LEFT OUTER JOIN (
SELECT pd.id, 1 as is_gold FROM software_datasources pd
JOIN issn on issn.id=pd.datasource
JOIN gold_oa on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
compute stats indi_software_gold_oa;
create table indi_org_findable stored as parquet as
with result_with_pid as (
select ro.organization organization, count(distinct rp.id) no_result_with_pid from result_organization ro
join result_pids rp on rp.id=ro.id
group by ro.organization),
result_has_abstract as (
select ro.organization organization, count(distinct rp.id) no_result_with_abstract from result_organization ro
join result rp on rp.id=ro.id where rp.abstract=true
group by ro.organization),
allresults as (
select organization, count(distinct id) no_allresults from result_organization
group by organization),
result_with_pid_share as (
select allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults pid_share
from allresults
join result_with_pid on result_with_pid.organization=allresults.organization),
result_with_abstract_share as (
select allresults.organization, result_has_abstract.no_result_with_abstract/allresults.no_allresults abstract_share
from allresults
join result_has_abstract on result_has_abstract.organization=allresults.organization)
select allresults.organization, coalesce((pid_share+abstract_share)/2,pid_share) org_findable
from allresults
join result_with_pid_share on result_with_pid_share.organization=allresults.organization
left outer join (
select organization, abstract_share from result_with_abstract_share) tmp on tmp.organization=allresults.organization;
compute stats indi_org_findable;
create table indi_org_openess stored as parquet as
WITH datasets_oa as (
SELECT ro.organization, count(dg.id) no_oadatasets FROM indi_datasets_gold_oa dg
join openaire_prod_stats.result_organization ro on dg.id=ro.id
join openaire_prod_stats.dataset ds on dg.id=ds.id
WHERE dg.is_gold=1
group by ro.organization),
software_oa as (
SELECT ro.organization, count(dg.id) no_oasoftware FROM indi_software_gold_oa dg
join openaire_prod_stats.result_organization ro on dg.id=ro.id
join openaire_prod_stats.software ds on dg.id=ds.id
WHERE dg.is_gold=1
group by ro.organization),
pubs_oa as (
SELECT ro.organization, count(dg.id) no_oapubs FROM indi_pub_gold_oa dg
join openaire_prod_stats.result_organization ro on dg.id=ro.id
join openaire_prod_stats.publication ds on dg.id=ds.id
where dg.is_gold=1
group by ro.organization),
allpubs as (
SELECT ro.organization organization, count(ro.id) no_allpubs FROM result_organization ro
join openaire_prod_stats.publication ps on ps.id=ro.id
group by ro.organization),
alldatasets as (
SELECT ro.organization organization, count(ro.id) no_alldatasets FROM result_organization ro
join openaire_prod_stats.dataset ps on ps.id=ro.id
group by ro.organization),
allsoftware as (
SELECT ro.organization organization, count(ro.id) no_allsoftware FROM result_organization ro
join openaire_prod_stats.software ps on ps.id=ro.id
group by ro.organization),
allpubsshare as (
select pubs_oa.organization, pubs_oa.no_oapubs/allpubs.no_allpubs p from allpubs
join pubs_oa on allpubs.organization=pubs_oa.organization),
alldatasetssshare as (
select datasets_oa.organization, datasets_oa.no_oadatasets/alldatasets.no_alldatasets c
from alldatasets
join datasets_oa on alldatasets.organization=datasets_oa.organization),
allsoftwaresshare as (
select software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsoftware s
from allsoftware
join software_oa on allsoftware.organization=software_oa.organization)
select allpubsshare.organization, coalesce((c+p+s)/3, p) org_openess
FROM allpubsshare
left outer join (
select organization,c from
alldatasetssshare) tmp on tmp.organization=allpubsshare.organization
left outer join (
select organization,s from allsoftwaresshare) tmp1 on tmp1.organization=allpubsshare.organization;
compute stats indi_org_openess;
--create table indi_software_gold_oa stored as parquet as
--WITH gold_oa AS (
-- SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_1 as issn
-- FROM stats_ext.oa_journals
-- WHERE issn_1 != ""
-- UNION
-- ALL SELECT issn_l,journal_is_in_doaj,journal_is_oa,issn_2 as issn
-- FROM stats_ext.oa_journals
-- WHERE issn_2 != "" ),
--issn AS (
-- SELECT *
-- FROM (
-- SELECT id,issn_printed as issn
-- FROM datasource
-- WHERE issn_printed IS NOT NULL
-- UNION
-- SELECT id, issn_online as issn
-- FROM datasource
-- WHERE issn_online IS NOT NULL ) as issn
-- WHERE LENGTH(issn) > 7)
--SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
--FROM software_datasources pd
--LEFT OUTER JOIN (
-- SELECT pd.id, 1 as is_gold FROM software_datasources pd
-- JOIN issn on issn.id=pd.datasource
-- JOIN gold_oa on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
--
--compute stats indi_software_gold_oa;
--create table indi_org_findable stored as parquet as
--with result_with_pid as (
-- select ro.organization organization, count(distinct rp.id) no_result_with_pid from result_organization ro
-- join result_pids rp on rp.id=ro.id
-- group by ro.organization),
--result_has_abstract as (
-- select ro.organization organization, count(distinct rp.id) no_result_with_abstract from result_organization ro
-- join result rp on rp.id=ro.id where rp.abstract=true
-- group by ro.organization),
--allresults as (
-- select organization, count(distinct id) no_allresults from result_organization
-- group by organization),
--result_with_pid_share as (
-- select allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults pid_share
-- from allresults
-- join result_with_pid on result_with_pid.organization=allresults.organization),
--result_with_abstract_share as (
-- select allresults.organization, result_has_abstract.no_result_with_abstract/allresults.no_allresults abstract_share
-- from allresults
-- join result_has_abstract on result_has_abstract.organization=allresults.organization)
--select allresults.organization, coalesce((pid_share+abstract_share)/2,pid_share) org_findable
--from allresults
--join result_with_pid_share on result_with_pid_share.organization=allresults.organization
--left outer join (
-- select organization, abstract_share from result_with_abstract_share) tmp on tmp.organization=allresults.organization;
--
--compute stats indi_org_findable;
--
--create table indi_org_openess stored as parquet as
--WITH datasets_oa as (
-- SELECT ro.organization, count(dg.id) no_oadatasets FROM indi_datasets_gold_oa dg
-- join result_organization ro on dg.id=ro.id
-- join dataset ds on dg.id=ds.id
-- WHERE dg.is_gold=1
-- group by ro.organization),
--software_oa as (
-- SELECT ro.organization, count(dg.id) no_oasoftware FROM indi_software_gold_oa dg
-- join result_organization ro on dg.id=ro.id
-- join software ds on dg.id=ds.id
-- WHERE dg.is_gold=1
-- group by ro.organization),
--pubs_oa as (
-- SELECT ro.organization, count(dg.id) no_oapubs FROM indi_pub_gold_oa dg
-- join result_organization ro on dg.id=ro.id
-- join publication ds on dg.id=ds.id
-- where dg.is_gold=1
-- group by ro.organization),
--allpubs as (
-- SELECT ro.organization organization, count(ro.id) no_allpubs FROM result_organization ro
-- join publication ps on ps.id=ro.id
-- group by ro.organization),
--alldatasets as (
-- SELECT ro.organization organization, count(ro.id) no_alldatasets FROM result_organization ro
-- join dataset ps on ps.id=ro.id
-- group by ro.organization),
--allsoftware as (
-- SELECT ro.organization organization, count(ro.id) no_allsoftware FROM result_organization ro
-- join software ps on ps.id=ro.id
-- group by ro.organization),
--allpubsshare as (
-- select pubs_oa.organization, pubs_oa.no_oapubs/allpubs.no_allpubs p from allpubs
-- join pubs_oa on allpubs.organization=pubs_oa.organization),
--alldatasetssshare as (
-- select datasets_oa.organization, datasets_oa.no_oadatasets/alldatasets.no_alldatasets c
-- from alldatasets
-- join datasets_oa on alldatasets.organization=datasets_oa.organization),
--allsoftwaresshare as (
-- select software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsoftware s
-- from allsoftware
-- join software_oa on allsoftware.organization=software_oa.organization)
--select allpubsshare.organization, coalesce((c+p+s)/3, p) org_openess
--FROM allpubsshare
--left outer join (
-- select organization,c from
-- alldatasetssshare) tmp on tmp.organization=allpubsshare.organization
--left outer join (
-- select organization,s from allsoftwaresshare) tmp1 on tmp1.organization=allpubsshare.organization;
--
--compute stats indi_org_openess;
--
create table indi_pub_hybrid_oa_with_cc stored as parquet as
WITH hybrid_oa AS (
SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_print as issn
@ -418,3 +452,394 @@ GROUP BY result_id, repository_id, `year`
order by `year` asc, result_id;
compute stats indi_pub_downloads_datasource_year;
---- Sprint 7 ----
create table indi_pub_gold_oa stored as parquet as
WITH gold_oa AS ( SELECT
issn_l,
journal_is_in_doaj,
journal_is_oa,
issn_1 as issn
FROM
stats_ext.oa_journals
WHERE
issn_1 != ""
UNION
ALL SELECT
issn_l,
journal_is_in_doaj,
journal_is_oa,
issn_2 as issn
FROM
stats_ext.oa_journals
WHERE
issn_2 != "" ), issn AS ( SELECT
*
FROM
( SELECT
id,
issn_printed as issn
FROM
datasource
WHERE
issn_printed IS NOT NULL
UNION
SELECT
id,
issn_online as issn
FROM
datasource
WHERE
issn_online IS NOT NULL or id like '%doajarticles%') as issn
WHERE
LENGTH(issn) > 7)
SELECT
DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
FROM
publication_datasources pd
left outer join(
select pd.id, 1 as is_gold FROM publication_datasources pd
JOIN issn on issn.id=pd.datasource
JOIN gold_oa on issn.issn = gold_oa.issn) tmp
on pd.id=tmp.id;
compute stats indi_pub_gold_oa;
create table indi_pub_hybrid stored as parquet as
WITH gold_oa AS ( SELECT
issn_l,
journal_is_in_doaj,
journal_is_oa,
issn_1 as issn,
has_apc
FROM
stats_ext.oa_journals
WHERE
issn_1 != ""
UNION
ALL SELECT
issn_l,
journal_is_in_doaj,
journal_is_oa,
issn_2 as issn,
has_apc
FROM
stats_ext.oa_journals
WHERE
issn_2 != "" ), issn AS ( SELECT
*
FROM
( SELECT
id,
issn_printed as issn
FROM
datasource
WHERE
issn_printed IS NOT NULL
UNION
SELECT
id,
issn_online as issn
FROM
datasource
WHERE
issn_online IS NOT NULL or id like '%doajarticles%') as issn
WHERE
LENGTH(issn) > 7)
select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid
from publication_datasources pd
left outer join (
select pd.id, 1 as is_hybrid from publication_datasources pd
join datasource d on d.id=pd.datasource
join issn on issn.id=pd.datasource
join gold_oa on issn.issn=gold_oa.issn
where (gold_oa.journal_is_in_doaj=false or gold_oa.journal_is_oa=false))tmp
on pd.id=tmp.id;
compute stats indi_pub_hybrid;
create table indi_org_fairness stored as parquet as
--return results with PIDs, and rich metadata group by organization
with result_fair as
(select ro.organization organization, count(distinct ro.id) no_result_fair from result_organization ro
join result r on r.id=ro.id
--join result_pids rp on r.id=rp.id
where (title is not null) and (publisher is not null) and (abstract is true) and (year is not null) and (authors>0) and year>2003
group by ro.organization),
--return all results group by organization
allresults as (select organization, count(distinct ro.id) no_allresults from result_organization ro
join result r on r.id=ro.id
where year>2003
group by organization)
--return results_fair/all_results
select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
from allresults
join result_fair on result_fair.organization=allresults.organization;
compute stats indi_org_fairness;
create table indi_org_fairness_pub_pr stored as parquet as
with result_fair as
(select ro.organization organization, count(distinct ro.id) no_result_fair
from result_organization ro
join publication p on p.id=ro.id
join indi_pub_doi_from_crossref dc on dc.id=p.id
join indi_pub_grey_lit gl on gl.id=p.id
where (title is not null) and (publisher is not null) and (abstract is true) and (year is not null)
and (authors>0) and cast(year as int)>2003 and dc.doi_from_crossref=1 and gl.grey_lit=0
group by ro.organization),
allresults as (select organization, count(distinct ro.id) no_allresults from result_organization ro
join publication p on p.id=ro.id
where cast(year as int)>2003
group by organization)
--return results_fair/all_results
select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
from allresults
join result_fair on result_fair.organization=allresults.organization;
compute stats indi_org_fairness_pub_pr;
create table indi_org_fairness_pub_year stored as parquet as
with result_fair as
(select year, ro.organization organization, count(distinct ro.id) no_result_fair from result_organization ro
join publication p on p.id=ro.id
where (title is not null) and (publisher is not null) and (abstract is true) and (year is not null) and (authors>0) and cast(year as int)>2003
group by ro.organization, year),
allresults as (select year, organization, count(distinct ro.id) no_allresults from result_organization ro
join publication p on p.id=ro.id
where cast(year as int)>2003
group by organization, year)
select allresults.year, allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
from allresults
join result_fair on result_fair.organization=allresults.organization and result_fair.year=allresults.year;
compute stats indi_org_fairness_pub_year;
create table indi_org_fairness_pub as
with result_fair as
(select ro.organization organization, count(distinct ro.id) no_result_fair
from result_organization ro
join publication p on p.id=ro.id
where (title is not null) and (publisher is not null) and (abstract is true) and (year is not null)
and (authors>0) and cast(year as int)>2003
group by ro.organization),
allresults as (select organization, count(distinct ro.id) no_allresults from result_organization ro
join publication p on p.id=ro.id
where cast(year as int)>2003
group by organization)
select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
from allresults
join result_fair on result_fair.organization=allresults.organization;
compute stats indi_org_fairness_pub;
create table indi_org_fairness_year stored as parquet as
with result_fair as
(select year, ro.organization organization, count(distinct ro.id) no_result_fair from result_organization ro
join result r on r.id=ro.id
join result_pids rp on r.id=rp.id
where (title is not null) and (publisher is not null) and (abstract is true) and (year is not null) and (authors>0) and year>2003
group by ro.organization, year),
allresults as (select year, organization, count(distinct ro.id) no_allresults from result_organization ro
join result r on r.id=ro.id
where year>2003
group by organization, year)
--return results_fair/all_results
select allresults.year, allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
from allresults
join result_fair on result_fair.organization=allresults.organization and result_fair.year=allresults.year;
compute stats indi_org_fairness_year;
create table indi_org_findable_year stored as parquet as
--return results with PIDs group by organization,year
with result_with_pid as
(select year, ro.organization organization, count(distinct rp.id) no_result_with_pid from result_organization ro
join result_pids rp on rp.id=ro.id
join result r on r.id=rp.id
where year >2003
group by ro.organization, year),
--return all results group by organization,year
allresults as (select year, organization, count(distinct ro.id) no_allresults from result_organization ro
join result r on r.id=ro.id
where year >2003
group by organization, year)
--return results_with_pid/all_results
select allresults.year, allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults org_findable
from allresults
join result_with_pid on result_with_pid.organization=allresults.organization and result_with_pid.year=allresults.year;
compute stats indi_org_findable_year;
create table indi_org_findable stored as parquet as
--return results with PIDs group by organization
with result_with_pid as
(select ro.organization organization, count(distinct rp.id) no_result_with_pid from result_organization ro
join result_pids rp on rp.id=ro.id
join result r on r.id=rp.id
where year >2003
group by ro.organization),
--return all results group by organization
allresults as (select organization, count(distinct ro.id) no_allresults from result_organization ro
join result r on r.id=ro.id
where year >2003
group by organization)
--return results_with_pid/all_results
select allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults org_findable
from allresults
join result_with_pid on result_with_pid.organization=allresults.organization;
compute stats indi_org_findable;
create table indi_org_openess stored as parquet as
WITH pubs_oa as (
SELECT ro.organization, count(distinct r.id) no_oapubs FROM publication r
join result_organization ro on ro.id=r.id
join result_instance ri on ri.id=r.id
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
and cast(r.year as int)>2003
group by ro.organization),
datasets_oa as (
SELECT ro.organization, count(distinct r.id) no_oadatasets FROM dataset r
join result_organization ro on ro.id=r.id
join result_instance ri on ri.id=r.id
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
and cast(r.year as int)>2003
group by ro.organization),
software_oa as (
SELECT ro.organization, count(distinct r.id) no_oasoftware FROM software r
join result_organization ro on ro.id=r.id
join result_instance ri on ri.id=r.id
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
and cast(r.year as int)>2003
group by ro.organization),
allpubs as (
SELECT ro.organization organization, count(ro.id) no_allpubs FROM result_organization ro
join publication ps on ps.id=ro.id
where cast(ps.year as int)>2003
group by ro.organization),
alldatasets as (
SELECT ro.organization organization, count(ro.id) no_alldatasets FROM result_organization ro
join dataset ps on ps.id=ro.id
where cast(ps.year as int)>2003
group by ro.organization),
allsoftware as (
SELECT ro.organization organization, count(ro.id) no_allsoftware FROM result_organization ro
join software ps on ps.id=ro.id
where cast(ps.year as int)>2003
group by ro.organization),
allpubsshare as (
select pubs_oa.organization, pubs_oa.no_oapubs/allpubs.no_allpubs p from allpubs
join pubs_oa on allpubs.organization=pubs_oa.organization),
alldatasetssshare as (
select datasets_oa.organization, datasets_oa.no_oadatasets/alldatasets.no_alldatasets d
from alldatasets
join datasets_oa on alldatasets.organization=datasets_oa.organization),
allsoftwaresshare as (
select software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsoftware s
from allsoftware
join software_oa on allsoftware.organization=software_oa.organization)
select allpubsshare.organization,
(p+isnull(s,0)+isnull(d,0))/(1+(case when s is null then 0 else 1 end)
+(case when d is null then 0 else 1 end))
org_openess FROM allpubsshare
left outer join (select organization,d from
alldatasetssshare) tmp1
on tmp1.organization=allpubsshare.organization
left outer join (select organization,s from
allsoftwaresshare) tmp2
on tmp2.organization=allpubsshare.organization;
compute stats indi_org_openess;
create table indi_org_openess_year stored as parquet as
WITH pubs_oa as (
SELECT r.year, ro.organization, count(distinct r.id) no_oapubs FROM publication r
join result_organization ro on ro.id=r.id
join result_instance ri on ri.id=r.id
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
and cast(r.year as int)>2003
group by ro.organization,r.year),
datasets_oa as (
SELECT r.year,ro.organization, count(distinct r.id) no_oadatasets FROM dataset r
join result_organization ro on ro.id=r.id
join result_instance ri on ri.id=r.id
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
and cast(r.year as int)>2003
group by ro.organization, r.year),
software_oa as (
SELECT r.year,ro.organization, count(distinct r.id) no_oasoftware FROM software r
join result_organization ro on ro.id=r.id
join result_instance ri on ri.id=r.id
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
and cast(r.year as int)>2003
group by ro.organization, r.year),
allpubs as (
SELECT p.year,ro.organization organization, count(ro.id) no_allpubs FROM result_organization ro
join publication p on p.id=ro.id where cast(p.year as int)>2003
group by ro.organization, p.year),
alldatasets as (
SELECT d.year, ro.organization organization, count(ro.id) no_alldatasets FROM result_organization ro
join dataset d on d.id=ro.id where cast(d.year as int)>2003
group by ro.organization, d.year),
allsoftware as (
SELECT s.year,ro.organization organization, count(ro.id) no_allsoftware FROM result_organization ro
join software s on s.id=ro.id where cast(s.year as int)>2003
group by ro.organization, s.year),
allpubsshare as (
select allpubs.year, pubs_oa.organization, pubs_oa.no_oapubs/allpubs.no_allpubs p from allpubs
join pubs_oa on allpubs.organization=pubs_oa.organization where cast(allpubs.year as INT)=cast(pubs_oa.year as int)),
alldatasetssshare as (
select alldatasets.year, datasets_oa.organization, datasets_oa.no_oadatasets/alldatasets.no_alldatasets d
from alldatasets
join datasets_oa on alldatasets.organization=datasets_oa.organization where cast(alldatasets.year as INT)=cast(datasets_oa.year as int)),
allsoftwaresshare as (
select allsoftware.year, software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsoftware s
from allsoftware
join software_oa on allsoftware.organization=software_oa.organization where cast(allsoftware.year as INT)=cast(software_oa.year as int))
select allpubsshare.year, allpubsshare.organization,
(p+isnull(s,0)+isnull(d,0))/(1+(case when s is null then 0 else 1 end)
+(case when d is null then 0 else 1 end))
org_openess FROM allpubsshare
left outer join (select year, organization,d from
alldatasetssshare) tmp1
on tmp1.organization=allpubsshare.organization and tmp1.year=allpubsshare.year
left outer join (select year, organization,s from
allsoftwaresshare) tmp2
on tmp2.organization=allpubsshare.organization and tmp2.year=allpubsshare.year;
compute stats indi_org_openess_year;
create table indi_pub_has_preprint stored as parquet as
select distinct p.id, coalesce(has_preprint, 0) as has_preprint
from publication_classifications p
left outer join (
select p.id, 1 as has_preprint
from publication_classifications p
where p.type='Preprint') tmp
on p.id= tmp.id;
compute stats indi_pub_has_preprint;
create table indi_pub_in_subscribed stored as parquet as
select distinct p.id, coalesce(is_subscription, 0) as is_subscription
from publication p
left outer join(
select p.id, 1 as is_subscription from publication p
join indi_pub_gold_oa g on p.id=g.id
join indi_pub_hybrid h on p.id=h.id
join indi_pub_in_transformative t on p.id=t.id
where g.is_gold=0 and h.is_hybrid=0 and t.is_transformative=0) tmp
on p.id=tmp.id;
compute stats indi_pub_in_subscribed;
create table indi_result_with_pid as
select distinct p.id, coalesce(result_with_pid, 0) as result_with_pid
from result p
left outer join (
select p.id, 1 as result_with_pid
from result_pids p) tmp
on p.id= tmp.id;
compute stats indi_result_with_pid;

12
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql
View File

@ -38,7 +38,14 @@ create table TARGET.result stored as parquet as
'openorgs____::ec3665affa01aeafa28b7852c4176dbd', --Rudjer Boskovic Institute
'openorgs____::5f31346d444a7f06a28c880fb170b0f6', --Ghent University
'openorgs____::2dbe47117fd5409f9c61620813456632', --University of Luxembourg
'openorgs____::6445d7758d3a40c4d997953b6632a368' --National Institute of Informatics (NII)
'openorgs____::6445d7758d3a40c4d997953b6632a368', --National Institute of Informatics (NII)
'openorgs____::b77c01aa15de3675da34277d48de2ec1', -- Valencia Catholic University Saint Vincent Martyr
'openorgs____::7fe2f66cdc43983c6b24816bfe9cf6a0', -- Unviersity of Warsaw
'openorgs____::15e7921fc50d9aa1229a82a84429419e', -- University Of Thessaly
'openorgs____::11f7919dadc8f8a7251af54bba60c956', -- Technical University of Crete
'openorgs____::84f0c5f5dbb6daf42748485924efde4b', -- University of Piraeus
'openorgs____::4ac562f0376fce3539504567649cb373' -- University of Patras
) )) foo;
compute stats TARGET.result;
@ -107,6 +114,9 @@ compute stats TARGET.result_sources;
create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_topics;
create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_fos;
create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result);
create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result);
create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou;

4
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6.sql
View File

@ -11,13 +11,13 @@ where p.datainfo.deletedbyinference=false and p.datainfo.invisible=false;
CREATE TABLE ${stats_db_name}.project_organizations STORED AS PARQUET AS
SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization
from ${openaire_db_name}.relation r
WHERE r.reltype = 'projectOrganization'
WHERE r.reltype = 'projectOrganization' and r.source like '40|%'
and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false;
CREATE TABLE ${stats_db_name}.project_results STORED AS PARQUET AS
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result, r.datainfo.provenanceaction.classname as provenance
FROM ${openaire_db_name}.relation r
WHERE r.reltype = 'resultProject'
WHERE r.reltype = 'resultProject' and r.target like '40|%'
and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false;
create table ${stats_db_name}.project_classification STORED AS PARQUET as

11
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
View File

@ -123,6 +123,16 @@ UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_topics;
create table ${stats_db_name}.result_fos stored as parquet as
with
lvl1 as (select id, topic from ${stats_db_name}.result_topics where topic like '__ %' and type='Fields of Science and Technology classification'),
lvl2 as (select id, topic from ${stats_db_name}.result_topics where topic like '____ %' and type='Fields of Science and Technology classification'),
lvl3 as (select id, topic from ${stats_db_name}.result_topics where topic like '______ %' and type='Fields of Science and Technology classification')
select lvl1.id, lvl1.topic as lvl1, lvl2.topic as lvl2, lvl3.topic as lvl3
from lvl1
join lvl2 on lvl1.id=lvl2.id and substr(lvl2.topic, 1, 2)=substr(lvl1.topic, 1, 2)
join lvl3 on lvl3.id=lvl1.id and substr(lvl3.topic, 1, 4)=substr(lvl2.topic, 1, 4);
CREATE TABLE ${stats_db_name}.result_organization STORED AS PARQUET AS
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
FROM ${openaire_db_name}.relation r
@ -135,3 +145,4 @@ select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS da
FROM ${stats_db_name}.result r
JOIN ${stats_db_name}.project_results pr ON r.id = pr.result
JOIN ${stats_db_name}.project_tmp p ON p.id = pr.id;