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draft of test and resources

This commit is contained in:
Miriam Baglioni 2020-08-11 17:37:22 +02:00
parent 30a2b19b65
commit 25f4fbceea
2 changed files with 92 additions and 1 deletions
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87
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/graph/RelationFromOrganizationTest.java
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package eu.dnetlib.dhp.oa.graph.dump.graph;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation;
import org.apache.commons.io.FileUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SparkSession;
import org.junit.jupiter.api.AfterAll;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.Test;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.HashMap;
public class RelationFromOrganizationTest {
}
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static SparkSession spark;
private static Path workingDir;
private static final Logger log = LoggerFactory
.getLogger(RelationFromOrganizationTest.class);
private static HashMap<String, String> map = new HashMap<>();
@BeforeAll
public static void beforeAll() throws IOException {
workingDir = Files
.createTempDirectory(RelationFromOrganizationTest.class.getSimpleName());
log.info("using work dir {}", workingDir);
SparkConf conf = new SparkConf();
conf.setAppName(RelationFromOrganizationTest.class.getSimpleName());
conf.setMaster("local[*]");
conf.set("spark.driver.host", "localhost");
conf.set("hive.metastore.local", "true");
conf.set("spark.ui.enabled", "false");
conf.set("spark.sql.warehouse.dir", workingDir.toString());
conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
spark = SparkSession
.builder()
.appName(RelationFromOrganizationTest.class.getSimpleName())
.config(conf)
.getOrCreate();
}
@AfterAll
public static void afterAll() throws IOException {
FileUtils.deleteDirectory(workingDir.toFile());
spark.stop();
}
@Test
public void test1() throws Exception {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/relation")
.getPath();
SparkOrganizationRelation.main(new String[] {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-outputPath", workingDir.toString() + "/relation",
"-sourcePath", sourcePath
});
// dumpCommunityProducts.exec(MOCK_IS_LOOK_UP_URL,Boolean.FALSE, workingDir.toString()+"/dataset",sourcePath,"eu.dnetlib.dhp.schema.oaf.Dataset","eu.dnetlib.dhp.schema.dump.oaf.Dataset");
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<Relation> tmp = sc
.textFile(workingDir.toString() + "/relation")
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
verificationDataset.createOrReplaceTempView("table");
}

6
dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/graph/relation/relation
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{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"decisiontree-dedup-beta","inferred":true,"invisible":false,"provenanceaction":{"classid":"sysimport:dedup","classname":"Inferred by OpenAIRE","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"properties":[],"relClass":"merges","relType":"organizationOrganization","source":"20|dedup_wf_001::00edd377ceb26454f8d644bd36383d7a","subRelType":"dedup","target":"20|grid________::afaa39865943381c51f76c08725ffa75"}
{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"decisiontree-dedup-beta","inferred":true,"invisible":false,"provenanceaction":{"classid":"sysimport:dedup","classname":"Inferred by OpenAIRE","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"properties":[],"relClass":"merges","relType":"organizationOrganization","source":"20|dedup_wf_001::03c3cc44ed5921066438b5acf8bd61d0","subRelType":"dedup","target":"20|grid________::63daa724c27cc3511166414ae10d2860"}
{"collectedfrom":[{"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"properties":[],"relClass":"isAuthorInstitutionOf","relType":"resultOrganization","source":"20|dedup_wf_001::03cf8c9e4906720a09016208c934a9e0","subRelType":"affiliation","target":"50|doiboost____::6923f21ef86bee98e6f595c0edb0d44d"}
{"collectedfrom":[{"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"properties":[],"relClass":"isAuthorInstitutionOf","relType":"resultOrganization","source":"20|dedup_wf_001::03d0bfb13075c2310eed228ee5c0b6a0","subRelType":"affiliation","target":"50|dedup_wf_001::8265619189c8708f57a652e97831234d"}
{"collectedfrom":[{"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"properties":[],"relClass":"isAuthorInstitutionOf","relType":"resultOrganization","source":"20|dedup_wf_001::04164fc20b3138346446a164415de38f","subRelType":"affiliation","target":"50|doiboost____::09de6ea4c1a94458e58c491699f0988c"}
{"collectedfrom":[{"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"properties":[],"relClass":"isAuthorInstitutionOf","relType":"resultOrganization","source":"20|dedup_wf_001::04164fc20b3138346446a164415de38f","subRelType":"affiliation","target":"50|doiboost____::6c8d54e446d72efa7a53497a4b505b7c"}