Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta

dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/config-default.xml

@@ -0,0 +1,30 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>${jobTracker}</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>${nameNode}</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.action.sharelib.for.spark</name>
+        <value>spark2</value>
+    </property>
+    <property>
+        <name>hive_metastore_uris</name>
+        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
+    </property>
+    <property>
+        <name>hive_jdbc_url</name>
+        <value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000/;UseNativeQuery=1;?spark.executor.memory=22166291558;spark.yarn.executor.memoryOverhead=3225;spark.driver.memory=15596411699;spark.yarn.driver.memoryOverhead=1228</value>
+    </property>
+	<property>
+		<name>oozie.wf.workflow.notification.url</name>
+		<value>{serviceUrl}/v1/oozieNotification/jobUpdate?jobId=$jobId%26status=$status</value>
+	</property>
+</configuration>

dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/copyDataToImpalaCluster.sh

@@ -0,0 +1,75 @@
+export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+#export HADOOP_USER_NAME=$2
+
+function copydb() {
+
+  export HADOOP_USER="dimitris.pierrakos"
+  export HADOOP_USER_NAME='dimitris.pierrakos'
+
+  db=$1
+  FILE=("hive_wf_tmp_"$RANDOM)
+  hdfs dfs -mkdir hdfs://impala-cluster-mn1.openaire.eu:8020/tmp/$FILE/
+
+  # change ownership to impala
+#  hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/${db}.db
+  hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/
+
+
+  # copy the databases from ocean to impala
+  echo "copying $db"
+  hadoop distcp -Dmapreduce.map.memory.mb=6144 -pb hdfs://nameservice1/user/hive/warehouse/${db}.db hdfs://impala-cluster-mn1.openaire.eu:8020/tmp/$FILE/
+
+  hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/${db}.db
+
+  # drop tables from db
+  for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited  -q "show tables"`;
+    do
+        `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "drop table $i;"`;
+    done
+
+  # drop views from db
+  for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited  -q "show tables"`;
+    do
+        `impala-shell  -i impala-cluster-dn1.openaire.eu -d ${db} -q "drop view $i;"`;
+    done
+
+  # delete the database
+  impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database if exists ${db} cascade";
+
+  # create the databases
+  impala-shell -i impala-cluster-dn1.openaire.eu -q "create database ${db}";
+
+  impala-shell -q "INVALIDATE METADATA"
+  echo "creating schema for ${db}"
+  for ((  k  = 0;  k  < 5;  k ++ )); do
+  for i in `impala-shell -d ${db} --delimited  -q "show tables"`;
+    do
+      impala-shell -d ${db} --delimited  -q "show create table $i";
+    done |  sed 's/"$/;/' | sed 's/^"//' | sed 's/[[:space:]]\date[[:space:]]/`date`/g' | impala-shell --user $HADOOP_USER_NAME -i impala-cluster-dn1.openaire.eu -c -f -
+  done
+
+  # load the data from /tmp in the respective tables
+  echo "copying data in tables and computing stats"
+  for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited  -q "show tables"`;
+      do
+        impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "load data inpath '/tmp/$FILE/${db}.db/$i' into table $i";
+        impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "compute stats $i";
+      done
+
+  # deleting the remaining directory from hdfs
+hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -rm -R /tmp/$FILE/${db}.db
+}
+
+MONITOR_DB=$1
+#HADOOP_USER_NAME=$2
+
+copydb $MONITOR_DB'_institutions'
+copydb $MONITOR_DB
+

dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/finalizeImpalaCluster.sh

@@ -0,0 +1,29 @@
+export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+function createShadowDB() {
+  SOURCE=$1
+  SHADOW=$2
+
+  # drop views from db
+  for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${SHADOW} --delimited  -q "show tables"`;
+    do
+        `impala-shell  -i impala-cluster-dn1.openaire.eu -d ${SHADOW} -q "drop view $i;"`;
+    done
+
+  impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database ${SHADOW} CASCADE";
+  impala-shell -i impala-cluster-dn1.openaire.eu -q "create database if not exists ${SHADOW}";
+#  impala-shell -i impala-cluster-dn1.openaire.eu -d ${SHADOW} -q "show tables" | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -i impala-cluster-dn1.openaire.eu -f -
+  impala-shell -i impala-cluster-dn1.openaire.eu -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -i impala-cluster-dn1.openaire.eu -f -
+}
+
+MONITOR_DB=$1
+MONITOR_DB_SHADOW=$2
+
+createShadowDB $MONITOR_DB'_institutions' $MONITOR_DB'_institutions_shadow'
+createShadowDB $MONITOR_DB $MONITOR_DB'_shadow'

dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/monitor.sh

@@ -0,0 +1,54 @@
+export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+export SOURCE=$1
+export TARGET=$2
+export SHADOW=$3
+export SCRIPT_PATH=$4
+export SCRIPT_PATH2=$5
+export SCRIPT_PATH2=$6
+
+export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
+export HADOOP_USER_NAME="oozie"
+
+echo "Getting file from " $4
+hdfs dfs -copyToLocal $4
+
+echo "Getting file from " $5
+hdfs dfs -copyToLocal $5
+
+echo "Getting file from " $6
+hdfs dfs -copyToLocal $6
+
+#update Institutions DB
+cat updateMonitorDB_institutions.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_institutions/g1" > foo
+hive $HIVE_OPTS -f foo
+cat updateMonitorDB.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_institutions/g1" > foo
+hive $HIVE_OPTS -f foo
+
+echo "Hive shell finished"
+
+echo "Updating shadow monitor insitutions database"
+hive -e "drop database if exists ${SHADOW}_institutions cascade"
+hive -e "create database if not exists ${SHADOW}_institutions"
+hive $HIVE_OPTS --database ${2}_institutions -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}_institutions.\1 as select * from ${2}_institutions.\1;/" > foo
+hive -f foo
+echo "Shadow db monitor insitutions ready!"
+
+#update Monitor DB
+cat updateMonitorDBAll.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2/g1" > foo
+hive $HIVE_OPTS -f foo
+
+echo "Hive shell finished"
+
+echo "Updating shadow monitor database"
+hive -e "drop database if exists ${SHADOW} cascade"
+hive -e "create database if not exists ${SHADOW}"
+hive $HIVE_OPTS --database ${2} -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${2}.\1;/" > foo
+hive -f foo
+echo "Shadow db monitor insitutions ready!"

dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDB.sql

@@ -0,0 +1,138 @@
+INSERT INTO TARGET.result select * from TARGET.result_new;
+ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_citations select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_references_oc select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_classifications select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_apc select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_concepts select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_datasources select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_fundercount select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_gold select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_greenoa select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_languages select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_licenses select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_oids select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_organization select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_peerreviewed select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_pids select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_projectcount select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_projects select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_refereed select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_sources select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_topics select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_fos select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_accessroute select * from SOURCE.result_accessroute orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_accessroute COMPUTE STATISTICS;
+
+create or replace view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result_new);
+create or replace view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result_new);
+insert into TARGET.result_result select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou;
+drop view TARGET.foo1;
+drop view TARGET.foo2;
+ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS;
+
+
+-- indicators
+-- Sprint 1 ----
+INSERT INTO TARGET.indi_pub_green_oa select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_grey_lit select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_doi_from_crossref select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS;
+-- Sprint 2 ----
+INSERT INTO TARGET.indi_result_has_cc_licence select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_result_has_cc_licence_url select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_has_abstract select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_result_with_orcid select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS;
+---- Sprint 3 ----
+INSERT INTO TARGET.indi_funded_result_with_fundref select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS;
+
+---- Sprint 4 ----
+INSERT INTO TARGET.indi_pub_diamond select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_in_transformative select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_closed_other_open select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS;
+---- Sprint 5 ----
+INSERT INTO TARGET.indi_result_no_of_copies select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS;
+---- Sprint 6 ----
+INSERT INTO TARGET.indi_pub_hybrid_oa_with_cc select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_bronze_oa select * from SOURCE.indi_pub_bronze_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_bronze_oa COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_downloads select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id);
+ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_downloads_datasource select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id);
+ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_downloads_year select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id);
+ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_downloads_datasource_year select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id);
+ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS;
+---- Sprint 7 ----
+INSERT INTO TARGET.indi_pub_gold_oa select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_hybrid select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_has_preprint select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_in_subscribed select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_result_with_pid select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_impact_measures select * from SOURCE.indi_impact_measures orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_impact_measures COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_interdisciplinarity select * from SOURCE.indi_pub_interdisciplinarity orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_interdisciplinarity COMPUTE STATISTICS;
+
+DROP TABLE IF EXISTS TARGET.result_new;

dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDBAll.sql

@@ -0,0 +1,150 @@
+DROP TABLE IF EXISTS TARGET.result_new;
+
+create table TARGET.result_new as
+    select distinct * from (
+        select * from SOURCE.result r where exists (select 1 from SOURCE.result_organization ro where ro.id=r.id and ro.organization in (
+             'openorgs____::4d4051b56708688235252f1d8fddb8c1',	--Iscte - Instituto Universitário de Lisboa
+             'openorgs____::ab4ac74c35fa5dada770cf08e5110fab'	-- Universidade Católica Portuguesa
+        ) )) foo;
+
+INSERT INTO TARGET.result select * from TARGET.result_new;
+ANALYZE TABLE TARGET.result_new COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result select * from TARGET.result_new;
+ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_citations select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_references_oc select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_classifications select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_apc select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_concepts select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_datasources select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_fundercount select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_gold select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_greenoa select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_languages select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_licenses select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_oids select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_organization select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_peerreviewed select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_pids select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_projectcount select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_projects select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_refereed select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_sources select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_topics select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_fos select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS;
+
+INSERT INTO TARGET.result_accessroute select * from SOURCE.result_accessroute orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.result_accessroute COMPUTE STATISTICS;
+
+create or replace view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result_new);
+create or replace view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result_new);
+insert into TARGET.result_result select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou;
+drop view TARGET.foo1;
+drop view TARGET.foo2;
+ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS;
+
+
+-- indicators
+-- Sprint 1 ----
+INSERT INTO TARGET.indi_pub_green_oa select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_grey_lit select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_doi_from_crossref select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS;
+-- Sprint 2 ----
+INSERT INTO TARGET.indi_result_has_cc_licence select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_result_has_cc_licence_url select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_has_abstract select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_result_with_orcid select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS;
+---- Sprint 3 ----
+INSERT INTO TARGET.indi_funded_result_with_fundref select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS;
+
+---- Sprint 4 ----
+INSERT INTO TARGET.indi_pub_diamond select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_in_transformative select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_closed_other_open select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS;
+---- Sprint 5 ----
+INSERT INTO TARGET.indi_result_no_of_copies select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS;
+---- Sprint 6 ----
+INSERT INTO TARGET.indi_pub_hybrid_oa_with_cc select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_bronze_oa select * from SOURCE.indi_pub_bronze_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_bronze_oa COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_downloads select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id);
+ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_downloads_datasource select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id);
+ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_downloads_year select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id);
+ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_downloads_datasource_year select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id);
+ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS;
+---- Sprint 7 ----
+INSERT INTO TARGET.indi_pub_gold_oa select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_hybrid select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_has_preprint select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_in_subscribed select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_result_with_pid select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_impact_measures select * from SOURCE.indi_impact_measures orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_impact_measures COMPUTE STATISTICS;
+INSERT INTO TARGET.indi_pub_interdisciplinarity select * from SOURCE.indi_pub_interdisciplinarity orig where exists (select 1 from TARGET.result_new r where r.id=orig.id);
+ANALYZE TABLE TARGET.indi_pub_interdisciplinarity COMPUTE STATISTICS;
+
+DROP TABLE IF EXISTS TARGET.result_new;

dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDB_institutions.sql

@@ -0,0 +1,12 @@
+DROP TABLE IF EXISTS TARGET.result_new;
+
+create table TARGET.result_new as
+    select distinct * from (
+        select * from SOURCE.result r where exists (select 1 from SOURCE.result_organization ro where ro.id=r.id and ro.organization in (
+             'openorgs____::4d4051b56708688235252f1d8fddb8c1',	--Iscte - Instituto Universitário de Lisboa
+             'openorgs____::ab4ac74c35fa5dada770cf08e5110fab'	-- Universidade Católica Portuguesa
+        ) )) foo;
+
+INSERT INTO TARGET.result select * from TARGET.result_new;
+ANALYZE TABLE TARGET.result_new COMPUTE STATISTICS;
+

dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/workflow.xml

@@ -0,0 +1,110 @@
+<workflow-app name="Stats Monitor Update" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>stats_db_name</name>
+            <description>the target stats database name</description>
+        </property>
+        <property>
+            <name>monitor_db_name</name>
+            <description>the target monitor db name</description>
+        </property>
+        <property>
+            <name>monitor_db_shadow_name</name>
+            <description>the name of the shadow monitor db</description>
+        </property>
+        <property>
+            <name>hive_metastore_uris</name>
+            <description>hive server metastore URIs</description>
+        </property>
+        <property>
+            <name>hive_jdbc_url</name>
+            <description>hive server jdbc url</description>
+        </property>
+        <property>
+            <name>hive_timeout</name>
+            <description>the time period, in seconds, after which Hive fails a transaction if a Hive client has not sent a hearbeat. The default value is 300 seconds.</description>
+        </property>
+        <property>
+            <name>hadoop_user_name</name>
+            <description>user name of the wf owner</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>hive.metastore.uris</name>
+                <value>${hive_metastore_uris}</value>
+            </property>
+            <property>
+            	<name>hive.txn.timeout</name>
+            	<value>${hive_timeout}</value>
+            </property>
+	<property>
+	    <name>mapred.job.queue.name</name>
+	    <value>analytics</value>
+	</property>
+        </configuration>
+    </global>
+
+    <start to="resume_from"/>
+    <decision name="resume_from">
+        <switch>
+            <case to="Step1-updateMonitorDB">${wf:conf('resumeFrom') eq 'Step1-updateMonitorDB'}</case>
+            <case to="Step2-copyDataToImpalaCluster">${wf:conf('resumeFrom') eq 'Step2-copyDataToImpalaCluster'}</case>
+            <case to="Step3-finalizeImpalaCluster">${wf:conf('resumeFrom') eq 'Step3-finalizeImpalaCluster'}</case>
+            <default to="Step1-updateMonitorDB"/>
+        </switch>
+    </decision>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="Step1-updateMonitorDB">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>monitor.sh</exec>
+            <argument>${stats_db_name}</argument>
+            <argument>${monitor_db_name}</argument>
+            <argument>${monitor_db_shadow_name}</argument>
+            <argument>${wf:appPath()}/scripts/updateMonitorDB_institutions.sql</argument>
+            <argument>${wf:appPath()}/scripts/updateMonitorDB.sql</argument>
+            <argument>${wf:appPath()}/scripts/updateMonitorDBAll.sql</argument>
+            <file>monitor.sh</file>
+        </shell>
+        <ok to="Step2-copyDataToImpalaCluster"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="Step2-copyDataToImpalaCluster">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>copyDataToImpalaCluster.sh</exec>
+            <argument>${monitor_db_name}</argument>
+            <argument>${hadoop_user_name}</argument>
+            <file>copyDataToImpalaCluster.sh</file>
+        </shell>
+        <ok to="Step3-finalizeImpalaCluster"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="Step3-finalizeImpalaCluster">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>finalizeImpalaCluster.sh</exec>
+            <argument>${monitor_db_name}</argument>
+            <argument>${monitor_db_shadow_name}</argument>
+            <file>finalizeImpalaCluster.sh</file>
+        </shell>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/copyDataToImpalaCluster.sh

@@ -24,13 +24,13 @@ function copydb() {
   # drop tables from db
   for i in `impala-shell --user $HADOOP_USER_NAME -i impala-cluster-dn1.openaire.eu -d ${db} --delimited  -q "show tables"`;
     do
-        `impala-shell  -i impala-cluster-dn1.openaire.eu -d -d ${db} -q "drop table $i;"`;
+        `impala-shell  -i impala-cluster-dn1.openaire.eu -d ${db} -q "drop table $i;"`;
     done
 
   # drop views from db
   for i in `impala-shell --user $HADOOP_USER_NAME -i impala-cluster-dn1.openaire.eu -d ${db} --delimited  -q "show tables"`;
     do
-        `impala-shell  -i impala-cluster-dn1.openaire.eu -d -d ${db} -q "drop view $i;"`;
+        `impala-shell  -i impala-cluster-dn1.openaire.eu -d ${db} -q "drop view $i;"`;
     done
 
   # delete the database
@@ -82,12 +82,12 @@ copydb $USAGE_STATS_DB
 copydb $PROD_USAGE_STATS_DB
 copydb $EXT_DB
 copydb $STATS_DB
-#copydb $MONITOR_DB
+copydb $MONITOR_DB
 copydb $OBSERVATORY_DB
 
 copydb $MONITOR_DB'_funded'
 copydb $MONITOR_DB'_institutions'
-copydb $MONITOR_DB'_RIs_tail'
+copydb $MONITOR_DB'_ris_tail'
 
 contexts="knowmad::other dh-ch::other enermaps::other gotriple::other neanias-atmospheric::other rural-digital-europe::other covid-19::other aurora::other neanias-space::other north-america-studies::other north-american-studies::other eutopia::other"
 for i in ${contexts}

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/finalizeImpalaCluster.sh

@@ -13,7 +13,7 @@ function createShadowDB() {
   # drop views from db
   for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${SHADOW} --delimited  -q "show tables"`;
     do
-        `impala-shell  -i impala-cluster-dn1.openaire.eu -d -d ${SHADOW} -q "drop view $i;"`;
+        `impala-shell  -i impala-cluster-dn1.openaire.eu -d ${SHADOW} -q "drop view $i;"`;
     done
 
   impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database ${SHADOW} CASCADE";
@@ -36,13 +36,13 @@ createShadowDB $MONITOR_DB $MONITOR_DB_SHADOW
 createShadowDB $OBSERVATORY_DB $OBSERVATORY_DB_SHADOW
 createShadowDB USAGE_STATS_DB USAGE_STATS_DB_SHADOW
 
-createShadowDB $MONITOR_DB'_funded' $MONITOR_DB'_funded_shadow'
+createShadowDB $MONITOR_DB'_funded' $MONITOR_DB_SHADOW'_shadow_funded'
-createShadowDB $MONITOR_DB'_institutions' $MONITOR_DB'_institutions_shadow'
+createShadowDB $MONITOR_DB'_institutions' $MONITOR_DB_SHADOW'_shadow_institutions'
-createShadowDB $MONITOR_DB'_RIs_tail' $MONITOR_DB'_RIs_tail_shadow'
+createShadowDB $MONITOR_DB'_ris_tail' $MONITOR_DB_SHADOW'_shadow_ris_tail'
 
 contexts="knowmad::other dh-ch::other enermaps::other gotriple::other neanias-atmospheric::other rural-digital-europe::other covid-19::other aurora::other neanias-space::other north-america-studies::other north-american-studies::other eutopia::other"
 for i in ${contexts}
 do
    tmp=`echo "$i"  | sed 's/'-'/'_'/g' | sed 's/'::'/'_'/g'`
-  createShadowDB ${MONITOR_DB}'_'${tmp} ${MONITOR_DB}'_'${tmp}'_shadow'
+  createShadowDB ${MONITOR_DB}'_'${tmp} ${MONITOR_DB_SHADOW}'_shadow_'${tmp}
 done

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/monitor.sh

@@ -14,6 +14,7 @@ export SCRIPT_PATH2=$5
 export SCRIPT_PATH3=$6
 export SCRIPT_PATH4=$7
 export SCRIPT_PATH5=$8
+export SCRIPT_PATH6=$9
 
 export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
 export HADOOP_USER_NAME="oozie"
@@ -33,12 +34,19 @@ hdfs dfs -copyToLocal $7
 echo "Getting file from " $8
 hdfs dfs -copyToLocal $8
 
+echo "Getting file from " $9
+hdfs dfs -copyToLocal $9
+
+
 echo "Creating monitor database"
+cat step20-createMonitorDBAll.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2/g1" > foo
+hive $HIVE_OPTS -f foo
+
 cat step20-createMonitorDB_funded.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_funded/g1" > foo
 hive $HIVE_OPTS -f foo
 cat step20-createMonitorDB.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_funded/g1" > foo
 hive $HIVE_OPTS -f foo
-#
+
 cat step20-createMonitorDB_institutions.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_institutions/g1" > foo
 hive $HIVE_OPTS -f foo
 cat step20-createMonitorDB.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_institutions/g1" > foo
@@ -56,14 +64,20 @@ do
   hive $HIVE_OPTS -f foo
 done
 
-
+cat step20-createMonitorDB_RIs_tail.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_ris_tail/g1" | sed "s/CONTEXTS/\"'knowmad::other','dh-ch::other', 'enermaps::other', 'gotriple::other', 'neanias-atmospheric::other', 'rural-digital-europe::other', 'covid-19::other', 'aurora::other', 'neanias-space::other', 'north-america-studies::other', 'north-american-studies::other', 'eutopia::other'\"/g" > foo
-cat step20-createMonitorDB_RIs_tail.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_RIs_tail/g1" | sed "s/CONTEXTS/\"'knowmad::other','dh-ch::other', 'enermaps::other', 'gotriple::other', 'neanias-atmospheric::other', 'rural-digital-europe::other', 'covid-19::other', 'aurora::other', 'neanias-space::other', 'north-america-studies::other', 'north-american-studies::other', 'eutopia::other'\"/g" > foo
 hive $HIVE_OPTS -f foo
-cat step20-createMonitorDB.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_RIs_tail/g1" > foo
+cat step20-createMonitorDB.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_ris_tail/g1" > foo
 hive $HIVE_OPTS -f foo
 
 echo "Hive shell finished"
 
+echo "Updating shadow monitor all database"
+hive -e "drop database if exists ${SHADOW} cascade"
+hive -e "create database if not exists ${SHADOW}"
+hive $HIVE_OPTS --database ${2} -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${2}.\1;/" > foo
+hive -f foo
+echo "Updated shadow monitor all database"
+
 echo "Updating shadow monitor funded database"
 hive -e "drop database if exists ${SHADOW}_funded cascade"
 hive -e "create database if not exists ${SHADOW}_funded"

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql

@@ -37,8 +37,15 @@ select * from ${stats_db_name}.otherresearchproduct_refereed;
 
 create table if not exists ${stats_db_name}.indi_impact_measures STORED AS PARQUET as
 select substr(id, 4) as id, measures_ids.id impactmetric, cast(measures_ids.unit.value[0] as double) score,
-cast(measures_ids.unit.value[0] as decimal(6,3)) score_dec, measures_ids.unit.value[1] class
+cast(measures_ids.unit.value[0] as decimal(6,3)) score_dec, measures_ids.unit.value[1] impact_class
 from ${openaire_db_name}.result lateral view explode(measures) measures as measures_ids
 where measures_ids.id!='views' and measures_ids.id!='downloads';
 
-ANALYZE TABLE indi_impact_measures COMPUTE STATISTICS;
+create table if not exists ${stats_db_name}.result_apc_affiliations STORED AS PARQUET as
+select distinct substr(rel.target,4) id, substr(rel.source,4) organization, o.legalname.value name,
+cast(rel.properties[0].value as double) apc_amount,
+rel.properties[1].value apc_currency
+from ${openaire_db_name}.relation rel
+join ${openaire_db_name}.organization o on o.id=rel.source
+join ${openaire_db_name}.result r on r.id=rel.target
+where rel.subreltype = 'affiliation' and rel.datainfo.deletedbyinference = false and size(rel.properties)>0;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15_5.sql

@@ -35,6 +35,7 @@ create or replace view ${stats_db_name}.doctoratestudents as select * from stats
 create or replace view ${stats_db_name}.totalresearchers as select * from stats_ext.totalresearchers;
 create or replace view ${stats_db_name}.totalresearchersft as select * from stats_ext.totalresearchersft;
 create or replace view ${stats_db_name}.hrrst as select * from stats_ext.hrrst;
+create or replace view ${stats_db_name}.graduatedoctorates as select * from stats_ext.graduatedoctorates;
 
 create table if not exists ${stats_db_name}.result_instance stored as parquet as
 select distinct r.*

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql

@@ -88,85 +88,88 @@ create view if not exists TARGET.doctoratestudents as select * from SOURCE.docto
 create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
 create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
 create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
+create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates;
 
 create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS;
 
 create table TARGET.result_references_oc stored as parquet as select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS;
 
 create table TARGET.result_citations_oc stored as parquet as select * from SOURCE.result_citations_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_citations_oc COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_citations_oc COMPUTE STATISTICS;
 
 create table TARGET.result_classifications stored as parquet as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS;
 
 create table TARGET.result_apc stored as parquet as select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS;
 
 create table TARGET.result_concepts stored as parquet as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS;
 
 create table TARGET.result_datasources stored as parquet as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS;
 
 create table TARGET.result_fundercount stored as parquet as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS;
 
 create table TARGET.result_gold stored as parquet as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS;
 
 create table TARGET.result_greenoa stored as parquet as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS;
 
 create table TARGET.result_languages stored as parquet as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS;
 
 create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS;
 
 create table TARGET.licenses_normalized STORED AS PARQUET as select * from SOURCE.licenses_normalized;
-ANALYZE TABLE TARGET.licenses_normalized COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.licenses_normalized COMPUTE STATISTICS;
 
 create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS;
 
 create table TARGET.result_organization stored as parquet as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS;
 
 create table TARGET.result_peerreviewed stored as parquet as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS;
 
 create table TARGET.result_pids stored as parquet as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS;
 
 create table TARGET.result_projectcount stored as parquet as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS;
 
 create table TARGET.result_projects stored as parquet as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS;
 
 create table TARGET.result_refereed stored as parquet as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS;
 
 create table TARGET.result_sources stored as parquet as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS;
 
 create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS;
 
 create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS;
 
 create table TARGET.result_accessroute stored as parquet as select * from SOURCE.result_accessroute orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.result_accessroute COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_accessroute COMPUTE STATISTICS;
+
+create table TARGET.result_orcid stored as parquet as select * from SOURCE.result_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
 
 create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result);
 create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result);
 create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou;
 drop view TARGET.foo1;
 drop view TARGET.foo2;
-ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS;
 
 -- datasources
 create view if not exists TARGET.datasource as select * from SOURCE.datasource;
@@ -175,7 +178,7 @@ create view if not exists TARGET.datasource_organizations as select * from SOURC
 create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources;
 
 create table TARGET.datasource_results stored as parquet as select id as result, datasource as id from TARGET.result_datasources;
-ANALYZE TABLE TARGET.datasource_results COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.datasource_results COMPUTE STATISTICS;
 
 -- organizations
 create view if not exists TARGET.organization as select * from SOURCE.organization;
@@ -193,28 +196,28 @@ create view if not exists TARGET.project_classification as select * from SOURCE.
 create view if not exists TARGET.project_organization_contribution as select * from SOURCE.project_organization_contribution;
 
 create table TARGET.project_results stored as parquet as select id as result, project as id from TARGET.result_projects;
-ANALYZE TABLE TARGET.project_results COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.project_results COMPUTE STATISTICS;
 
 -- indicators
 -- Sprint 1 ----
 create table TARGET.indi_pub_green_oa stored as parquet as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS;
 create table TARGET.indi_pub_grey_lit stored as parquet as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS;
 create table TARGET.indi_pub_doi_from_crossref stored as parquet as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS;
 -- Sprint 2 ----
 create table TARGET.indi_result_has_cc_licence stored as parquet as select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS;
 create table TARGET.indi_result_has_cc_licence_url stored as parquet as select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS;
 create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS;
 create table TARGET.indi_result_with_orcid stored as parquet as select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS;
 ---- Sprint 3 ----
 create table TARGET.indi_funded_result_with_fundref stored as parquet as select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS;
 create view TARGET.indi_result_org_collab as select * from SOURCE.indi_result_org_collab;
 create view TARGET.indi_result_org_country_collab as select * from SOURCE.indi_result_org_country_collab;
 create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org;
@@ -223,32 +226,32 @@ create view TARGET.indi_funder_country_collab as select * from SOURCE.indi_funde
 create view TARGET.indi_result_country_collab as select * from SOURCE.indi_result_country_collab;
 ---- Sprint 4 ----
 create table TARGET.indi_pub_diamond stored as parquet as select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS;
 create table TARGET.indi_pub_in_transformative stored as parquet as select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS;
 create table TARGET.indi_pub_closed_other_open stored as parquet as select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS;
 ---- Sprint 5 ----
 create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS;
 ---- Sprint 6 ----
 create table TARGET.indi_pub_hybrid_oa_with_cc stored as parquet as select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS;
 create table TARGET.indi_pub_bronze_oa stored as parquet as select * from SOURCE.indi_pub_bronze_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_bronze_oa COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_bronze_oa COMPUTE STATISTICS;
 create table TARGET.indi_pub_downloads stored as parquet as select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
-ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS;
 create table TARGET.indi_pub_downloads_datasource stored as parquet as select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
-ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS;
 create table TARGET.indi_pub_downloads_year stored as parquet as select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
-ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS;
 create table TARGET.indi_pub_downloads_datasource_year stored as parquet as select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
-ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS;
 ---- Sprint 7 ----
 create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS;
 create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS;
 create view TARGET.indi_org_fairness as select * from SOURCE.indi_org_fairness;
 create view TARGET.indi_org_fairness_pub_pr as select * from SOURCE.indi_org_fairness_pub_pr;
 create view TARGET.indi_org_fairness_pub_year as select * from SOURCE.indi_org_fairness_pub_year;
@@ -259,12 +262,22 @@ create view TARGET.indi_org_findable as select * from SOURCE.indi_org_findable;
 create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess;
 create view TARGET.indi_org_openess_year as select * from SOURCE.indi_org_openess_year;
 create table TARGET.indi_pub_has_preprint stored as parquet as select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS;
 create table TARGET.indi_pub_in_subscribed stored as parquet as select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS;
 create table TARGET.indi_result_with_pid stored as parquet as select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS;
 create table TARGET.indi_impact_measures stored as parquet as select * from SOURCE.indi_impact_measures orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_impact_measures COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_impact_measures COMPUTE STATISTICS;
 create table TARGET.indi_pub_interdisciplinarity stored as parquet as select * from SOURCE.indi_pub_interdisciplinarity orig where exists (select 1 from TARGET.result r where r.id=orig.id);
-ANALYZE TABLE TARGET.indi_pub_interdisciplinarity COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.indi_pub_interdisciplinarity COMPUTE STATISTICS;
+create table TARGET.result_apc_affiliations stored as parquet as select * from SOURCE.result_apc_affiliations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_apc_affiliations COMPUTE STATISTICS;
+create table TARGET.indi_is_project_result_after stored as parquet as select * from SOURCE.indi_is_project_result_after orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
+create table TARGET.indi_is_funder_plan_s stored as parquet as select * from SOURCE.indi_is_funder_plan_s orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+create view TARGET.indi_funder_fairness as select * from SOURCE.indi_funder_fairness;
+create view TARGET.indi_funder_openess as select * from SOURCE.indi_funder_openess;
+create view TARGET.indi_funder_findable as select * from SOURCE.indi_funder_findable;
+create view TARGET.indi_ris_fairness as select * from SOURCE.indi_ris_fairness;
+create view TARGET.indi_ris_openess as select * from SOURCE.indi_ris_openess;
+create view TARGET.indi_ris_findable as select * from SOURCE.indi_ris_findable;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDBAll.sql

@@ -0,0 +1,292 @@
+drop database if exists TARGET cascade;
+create database if not exists TARGET;
+
+create view if not exists TARGET.category as select * from SOURCE.category;
+create view if not exists TARGET.concept as select * from SOURCE.concept;
+create view if not exists TARGET.context as select * from SOURCE.context;
+create view if not exists TARGET.country as select * from SOURCE.country;
+create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
+create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
+create view if not exists TARGET.funder as select * from SOURCE.funder;
+create view if not exists TARGET.fundref as select * from SOURCE.fundref;
+create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
+create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure;
+create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents;
+create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
+create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
+create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
+create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates;
+
+create table TARGET.result stored as parquet as
+    select distinct * from (
+        select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on rp.project=p.id where rp.id=r.id)
+        union all
+        select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id)
+        union all
+        select * from SOURCE.result r where exists (select 1 from SOURCE.result_organization ro where ro.id=r.id and ro.organization in (
+             'openorgs____::b84450f9864182c67b8611b5593f4250', --"Athena Research and Innovation Center In Information Communication & Knowledge Technologies', --ARC"
+             'openorgs____::d41cf6bd4ab1b1362a44397e0b95c975', --National Research Council
+             'openorgs____::d2a09b9d5eabb10c95f9470e172d05d2', --??? Not exists ??
+             'openorgs____::d169c7407dd417152596908d48c11460', --Masaryk University
+             'openorgs____::1ec924b1759bb16d0a02f2dad8689b21', --University of Belgrade
+             'openorgs____::0ae431b820e4c33db8967fbb2b919150', --University of Helsinki
+             'openorgs____::759d59f05d77188faee99b7493b46805', --University of Minho
+             'openorgs____::cad284878801b9465fa51a95b1d779db', --Universidad Politécnica de Madrid
+             'openorgs____::eadc8da90a546e98c03f896661a2e4d4', --University of Göttingen
+             'openorgs____::c0286313e36479eff8676dba9b724b40', --National and Kapodistrian University of Athens
+             -- 'openorgs____::c80a8243a5e5c620d7931c88d93bf17a', --Université Paris Diderot
+             'openorgs____::c08634f0a6b0081c3dc6e6c93a4314f3', --Bielefeld University
+             'openorgs____::6fc85e4a8f7ecaf4b0c738d010e967ea', --University of Southern Denmark
+             'openorgs____::3d6122f87f9a97a99d8f6e3d73313720', --Humboldt-Universität zu Berlin
+             'openorgs____::16720ada63d0fa8ca41601feae7d1aa5', --TU Darmstadt
+             'openorgs____::ccc0a066b56d2cfaf90c2ae369df16f5', --KU Leuven
+             'openorgs____::4c6f119632adf789746f0a057ed73e90', --University of the Western Cape
+             'openorgs____::ec3665affa01aeafa28b7852c4176dbd', --Rudjer Boskovic Institute
+             'openorgs____::5f31346d444a7f06a28c880fb170b0f6', --Ghent University
+             'openorgs____::2dbe47117fd5409f9c61620813456632', --University of Luxembourg
+             'openorgs____::6445d7758d3a40c4d997953b6632a368', --National Institute of Informatics (NII)
+             'openorgs____::b77c01aa15de3675da34277d48de2ec1', -- Valencia Catholic University Saint Vincent Martyr
+             'openorgs____::7fe2f66cdc43983c6b24816bfe9cf6a0', -- Unviersity of Warsaw
+             'openorgs____::15e7921fc50d9aa1229a82a84429419e', -- University Of Thessaly
+             'openorgs____::11f7919dadc8f8a7251af54bba60c956', -- Technical University of Crete
+             'openorgs____::84f0c5f5dbb6daf42748485924efde4b', -- University of Piraeus
+             'openorgs____::4ac562f0376fce3539504567649cb373', -- University of Patras
+             'openorgs____::3e8d1f8c3f6cd7f418b09f1f58b4873b', -- Aristotle University of Thessaloniki
+             'openorgs____::3fcef6e1c469c10f2a84b281372c9814', -- World Bank
+             'openorgs____::1698a2eb1885ef8adb5a4a969e745ad3', -- École des Ponts ParisTech
+             'openorgs____::e15adb13c4dadd49de4d35c39b5da93a',  -- Nanyang Technological University
+             'openorgs____::4b34103bde246228fcd837f5f1bf4212',  -- Autonomous University of Barcelona
+             'openorgs____::72ec75fcfc4e0df1a76dc4c49007fceb',	-- McMaster University
+             'openorgs____::51c7fc556e46381734a25a6fbc3fd398',	-- University of Modena and Reggio Emilia
+             'openorgs____::235d7f9ad18ecd7e6dc62ea4990cb9db',	-- Bilkent University
+             'openorgs____::31f2fa9e05b49d4cf40a19c3fed8eb06',	-- Saints Cyril and Methodius University of Skopje
+             'openorgs____::db7686f30f22cbe73a4fde872ce812a6', -- University of Milan
+             'openorgs____::b8b8ca674452579f3f593d9f5e557483',   -- University College Cork
+             'openorgs____::38d7097854736583dde879d12dacafca',	-- Brown University
+             'openorgs____::57784c9e047e826fefdb1ef816120d92', --Arts et Métiers ParisTech
+             'openorgs____::2530baca8a15936ba2e3297f2bce2e7e',	-- University of Cape Town
+             'openorgs____::d11f981828c485cd23d93f7f24f24db1',  -- Technological University Dublin
+             'openorgs____::5e6bf8962665cdd040341171e5c631d8',  -- Delft University of Technology
+             'openorgs____::846cb428d3f52a445f7275561a7beb5d',  -- University of Manitoba
+             'openorgs____::eb391317ed0dc684aa81ac16265de041',	-- Universitat Rovira i Virgili
+             'openorgs____::66aa9fc2fceb271423dfabcc38752dc0',  -- Lund University
+             'openorgs____::3cff625a4370d51e08624cc586138b2f',	-- IMT Atlantique
+             'openorgs____::c0b262bd6eab819e4c994914f9c010e2',   -- National Institute of Geophysics and Volcanology
+             'openorgs____::1624ff7c01bb641b91f4518539a0c28a',   -- Vrije Universiteit Amsterdam
+             'openorgs____::4d4051b56708688235252f1d8fddb8c1',	 --Iscte - Instituto Universitário de Lisboa
+             'openorgs____::ab4ac74c35fa5dada770cf08e5110fab',	-- Universidade Católica Portuguesa
+             'openorgs____::4d4051b56708688235252f1d8fddb8c1',	-- Iscte - Instituto Universitário de Lisboa
+             'openorgs____::5d55fb216b14691cf68218daf5d78cd9',  -- Munster Technological University
+             'openorgs____::0fccc7640f0cb44d5cd1b06b312a06b9',  -- Cardiff University
+             'openorgs____::8839b55dae0c84d56fd533f52d5d483a'   -- Leibniz Institute of Ecological Urban and Regional Development
+        ) )) foo;
+
+--ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
+
+create view if not exists TARGET.category as select * from SOURCE.category;
+create view if not exists TARGET.concept as select * from SOURCE.concept;
+create view if not exists TARGET.context as select * from SOURCE.context;
+create view if not exists TARGET.country as select * from SOURCE.country;
+create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
+create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
+create view if not exists TARGET.funder as select * from SOURCE.funder;
+create view if not exists TARGET.fundref as select * from SOURCE.fundref;
+create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
+create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure;
+create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents;
+create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
+create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
+create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
+--create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates;
+
+create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS;
+
+create table TARGET.result_references_oc stored as parquet as select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS;
+
+create table TARGET.result_citations_oc stored as parquet as select * from SOURCE.result_citations_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_citations_oc COMPUTE STATISTICS;
+
+create table TARGET.result_classifications stored as parquet as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS;
+
+create table TARGET.result_apc stored as parquet as select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS;
+
+create table TARGET.result_concepts stored as parquet as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS;
+
+create table TARGET.result_datasources stored as parquet as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS;
+
+create table TARGET.result_fundercount stored as parquet as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS;
+
+create table TARGET.result_gold stored as parquet as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS;
+
+create table TARGET.result_greenoa stored as parquet as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS;
+
+create table TARGET.result_languages stored as parquet as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS;
+
+create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS;
+
+create table TARGET.licenses_normalized STORED AS PARQUET as select * from SOURCE.licenses_normalized;
+--ANALYZE TABLE TARGET.licenses_normalized COMPUTE STATISTICS;
+
+create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS;
+
+create table TARGET.result_organization stored as parquet as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS;
+
+create table TARGET.result_peerreviewed stored as parquet as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS;
+
+create table TARGET.result_pids stored as parquet as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS;
+
+create table TARGET.result_projectcount stored as parquet as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS;
+
+create table TARGET.result_projects stored as parquet as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS;
+
+create table TARGET.result_refereed stored as parquet as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS;
+
+create table TARGET.result_sources stored as parquet as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS;
+
+create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS;
+
+create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS;
+
+create table TARGET.result_accessroute stored as parquet as select * from SOURCE.result_accessroute orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_accessroute COMPUTE STATISTICS;
+
+create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result);
+create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result);
+create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou;
+drop view TARGET.foo1;
+drop view TARGET.foo2;
+--ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS;
+
+-- datasources
+create view if not exists TARGET.datasource as select * from SOURCE.datasource;
+create view if not exists TARGET.datasource_oids as select * from SOURCE.datasource_oids;
+create view if not exists TARGET.datasource_organizations as select * from SOURCE.datasource_organizations;
+create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources;
+
+create table TARGET.datasource_results stored as parquet as select id as result, datasource as id from TARGET.result_datasources;
+--ANALYZE TABLE TARGET.datasource_results COMPUTE STATISTICS;
+
+-- organizations
+create view if not exists TARGET.organization as select * from SOURCE.organization;
+create view if not exists TARGET.organization_datasources as select * from SOURCE.organization_datasources;
+create view if not exists TARGET.organization_pids as select * from SOURCE.organization_pids;
+create view if not exists TARGET.organization_projects as select * from SOURCE.organization_projects;
+create view if not exists TARGET.organization_sources as select * from SOURCE.organization_sources;
+
+-- projects
+create view if not exists TARGET.project as select * from SOURCE.project;
+create view if not exists TARGET.project_oids as select * from SOURCE.project_oids;
+create view if not exists TARGET.project_organizations as select * from SOURCE.project_organizations;
+create view if not exists TARGET.project_resultcount as select * from SOURCE.project_resultcount;
+create view if not exists TARGET.project_classification as select * from SOURCE.project_classification;
+create view if not exists TARGET.project_organization_contribution as select * from SOURCE.project_organization_contribution;
+
+create table TARGET.project_results stored as parquet as select id as result, project as id from TARGET.result_projects;
+--ANALYZE TABLE TARGET.project_results COMPUTE STATISTICS;
+
+-- indicators
+-- Sprint 1 ----
+create table TARGET.indi_pub_green_oa stored as parquet as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS;
+create table TARGET.indi_pub_grey_lit stored as parquet as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS;
+create table TARGET.indi_pub_doi_from_crossref stored as parquet as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS;
+-- Sprint 2 ----
+create table TARGET.indi_result_has_cc_licence stored as parquet as select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS;
+create table TARGET.indi_result_has_cc_licence_url stored as parquet as select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS;
+create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS;
+create table TARGET.indi_result_with_orcid stored as parquet as select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS;
+---- Sprint 3 ----
+create table TARGET.indi_funded_result_with_fundref stored as parquet as select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS;
+create view TARGET.indi_result_org_collab as select * from SOURCE.indi_result_org_collab;
+create view TARGET.indi_result_org_country_collab as select * from SOURCE.indi_result_org_country_collab;
+create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org;
+create view TARGET.indi_project_collab_org_country as select * from SOURCE.indi_project_collab_org_country;
+create view TARGET.indi_funder_country_collab as select * from SOURCE.indi_funder_country_collab;
+create view TARGET.indi_result_country_collab as select * from SOURCE.indi_result_country_collab;
+---- Sprint 4 ----
+create table TARGET.indi_pub_diamond stored as parquet as select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS;
+create table TARGET.indi_pub_in_transformative stored as parquet as select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS;
+create table TARGET.indi_pub_closed_other_open stored as parquet as select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS;
+---- Sprint 5 ----
+create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS;
+---- Sprint 6 ----
+create table TARGET.indi_pub_hybrid_oa_with_cc stored as parquet as select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS;
+create table TARGET.indi_pub_bronze_oa stored as parquet as select * from SOURCE.indi_pub_bronze_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_bronze_oa COMPUTE STATISTICS;
+create table TARGET.indi_pub_downloads stored as parquet as select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
+--ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS;
+create table TARGET.indi_pub_downloads_datasource stored as parquet as select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
+--ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS;
+create table TARGET.indi_pub_downloads_year stored as parquet as select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
+--ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS;
+create table TARGET.indi_pub_downloads_datasource_year stored as parquet as select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
+--ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS;
+---- Sprint 7 ----
+create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS;
+create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS;
+create view TARGET.indi_org_fairness as select * from SOURCE.indi_org_fairness;
+create view TARGET.indi_org_fairness_pub_pr as select * from SOURCE.indi_org_fairness_pub_pr;
+create view TARGET.indi_org_fairness_pub_year as select * from SOURCE.indi_org_fairness_pub_year;
+create view TARGET.indi_org_fairness_pub as select * from SOURCE.indi_org_fairness_pub;
+create view TARGET.indi_org_fairness_year as select * from SOURCE.indi_org_fairness_year;
+create view TARGET.indi_org_findable_year as select * from SOURCE.indi_org_findable_year;
+create view TARGET.indi_org_findable as select * from SOURCE.indi_org_findable;
+create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess;
+create view TARGET.indi_org_openess_year as select * from SOURCE.indi_org_openess_year;
+create table TARGET.indi_pub_has_preprint stored as parquet as select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS;
+create table TARGET.indi_pub_in_subscribed stored as parquet as select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS;
+create table TARGET.indi_result_with_pid stored as parquet as select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS;
+create table TARGET.indi_impact_measures stored as parquet as select * from SOURCE.indi_impact_measures orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_impact_measures COMPUTE STATISTICS;
+create table TARGET.indi_pub_interdisciplinarity stored as parquet as select * from SOURCE.indi_pub_interdisciplinarity orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.indi_pub_interdisciplinarity COMPUTE STATISTICS;
+create table TARGET.result_apc_affiliations stored as parquet as select * from SOURCE.result_apc_affiliations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+--ANALYZE TABLE TARGET.result_apc_affiliations COMPUTE STATISTICS;
+create table TARGET.indi_is_project_result_after stored as parquet as select * from SOURCE.indi_is_project_result_after orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+create table TARGET.indi_is_funder_plan_s stored as parquet as select * from SOURCE.indi_is_funder_plan_s orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+create view TARGET.indi_funder_fairness as select * from SOURCE.indi_funder_fairness;
+create view TARGET.indi_funder_openess as select * from SOURCE.indi_funder_openess;
+create view TARGET.indi_funder_findable as select * from SOURCE.indi_funder_findable;
+create view TARGET.indi_ris_fairness as select * from SOURCE.indi_ris_fairness;
+create view TARGET.indi_ris_openess as select * from SOURCE.indi_ris_openess;
+create view TARGET.indi_ris_findable as select * from SOURCE.indi_ris_findable;
+
+

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB_RIs.sql

@@ -12,4 +12,4 @@ create table TARGET.result stored as parquet as
 --             join SOURCE.result
              where rc.id=r.id and conc.category like CONTEXT)
 )  foo;
-ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result COMPUTE STATISTICS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB_RIs_tail.sql

@@ -12,4 +12,4 @@ create table TARGET.result stored as parquet as
 --             join SOURCE.result
              where rc.id=r.id and conc.category not in (CONTEXTS))
 )  foo;
-ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result COMPUTE STATISTICS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB_funded.sql

@@ -6,4 +6,4 @@ create table TARGET.result stored as parquet as
         select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on rp.project=p.id where rp.id=r.id)
     ) foo;
 
-ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result COMPUTE STATISTICS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB_institutions.sql

@@ -42,7 +42,7 @@ create table TARGET.result stored as parquet as
              'openorgs____::31f2fa9e05b49d4cf40a19c3fed8eb06', -- Saints Cyril and Methodius University of Skopje
              'openorgs____::db7686f30f22cbe73a4fde872ce812a6', -- University of Milan
              'openorgs____::b8b8ca674452579f3f593d9f5e557483',  -- University College Cork
-             'openorgs____::38d7097854736583dde879d12dacafca'	-- Brown University
+             'openorgs____::38d7097854736583dde879d12dacafca',	-- Brown University
              'openorgs____::57784c9e047e826fefdb1ef816120d92',  --Arts et Métiers ParisTech
              'openorgs____::2530baca8a15936ba2e3297f2bce2e7e',	-- University of Cape Town
              'openorgs____::d11f981828c485cd23d93f7f24f24db1',  -- Technological University Dublin
@@ -52,7 +52,13 @@ create table TARGET.result stored as parquet as
              'openorgs____::66aa9fc2fceb271423dfabcc38752dc0',  -- Lund University
              'openorgs____::3cff625a4370d51e08624cc586138b2f',	-- IMT Atlantique
              'openorgs____::c0b262bd6eab819e4c994914f9c010e2',   -- National Institute of Geophysics and Volcanology
-             'openorgs____::1624ff7c01bb641b91f4518539a0c28a'     -- Vrije Universiteit Amsterdam
+             'openorgs____::1624ff7c01bb641b91f4518539a0c28a',   -- Vrije Universiteit Amsterdam
+             'openorgs____::4d4051b56708688235252f1d8fddb8c1',	 --Iscte - Instituto Universitário de Lisboa
+             'openorgs____::ab4ac74c35fa5dada770cf08e5110fab',	 -- Universidade Católica Portuguesa
+             'openorgs____::4d4051b56708688235252f1d8fddb8c1',	 -- Iscte - Instituto Universitário de Lisboa
+             'openorgs____::5d55fb216b14691cf68218daf5d78cd9',  -- Munster Technological University
+             'openorgs____::0fccc7640f0cb44d5cd1b06b312a06b9',  -- Cardiff University
+             'openorgs____::8839b55dae0c84d56fd533f52d5d483a'   -- Leibniz Institute of Ecological Urban and Regional Development
         )))  foo;
 
-ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
+--ANALYZE TABLE TARGET.result COMPUTE STATISTICS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step21-createObservatoryDB.sql

@@ -8,7 +8,7 @@ from ${stats_db_name}.result r
     group by rl.id
 ) rln on rln.id=r.id;
 
-ANALYZE TABLE ${observatory_db_name}.result_cc_licence COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_cc_licence COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_affiliated_country stored as parquet as
 select
@@ -39,7 +39,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_affiliated_country COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_affiliated_country COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_affiliated_year stored as parquet as
 select
@@ -70,7 +70,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year;
 
-ANALYZE TABLE ${observatory_db_name}.result_affiliated_year COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_affiliated_year COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_affiliated_year_country stored as parquet as
 select
@@ -101,7 +101,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_affiliated_year_country COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_affiliated_year_country COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_affiliated_datasource stored as parquet as
 select
@@ -134,7 +134,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_affiliated_datasource COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_affiliated_datasource COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_affiliated_datasource_country stored as parquet as
 select
@@ -167,7 +167,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_affiliated_datasource_country COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_affiliated_datasource_country COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_affiliated_organization stored as parquet as
 select
@@ -198,7 +198,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_affiliated_organization COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_affiliated_organization COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_affiliated_organization_country stored as parquet as
 select
@@ -229,7 +229,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_affiliated_organization_country COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_affiliated_organization_country COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_affiliated_funder stored as parquet as
 select
@@ -262,7 +262,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder;
 
-ANALYZE TABLE ${observatory_db_name}.result_affiliated_funder COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_affiliated_funder COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_affiliated_funder_country stored as parquet as
 select
@@ -295,7 +295,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_affiliated_funder_country COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_affiliated_funder_country COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_deposited_country stored as parquet as
 select
@@ -328,7 +328,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_deposited_country COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_deposited_country COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_deposited_year stored as parquet as
 select
@@ -361,7 +361,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year;
 
-ANALYZE TABLE ${observatory_db_name}.result_deposited_year COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_deposited_year COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_deposited_year_country stored as parquet as
 select
@@ -394,7 +394,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_deposited_year_country COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_deposited_year_country COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_deposited_datasource stored as parquet as
 select
@@ -427,7 +427,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_deposited_datasource COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_deposited_datasource COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_deposited_datasource_country stored as parquet as
 select
@@ -460,7 +460,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_deposited_datasource_country COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_deposited_datasource_country COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_deposited_organization stored as parquet as
 select
@@ -493,7 +493,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_deposited_organization COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_deposited_organization COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_deposited_organization_country stored as parquet as
 select
@@ -526,7 +526,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_deposited_organization_country COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_deposited_organization_country COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_deposited_funder stored as parquet as
 select
@@ -561,7 +561,7 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder;
 
-ANALYZE TABLE ${observatory_db_name}.result_deposited_funder COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_deposited_funder COMPUTE STATISTICS;
 
 create table ${observatory_db_name}.result_deposited_funder_country stored as parquet as
 select
@@ -596,4 +596,4 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
          case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
          cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name;
 
-ANALYZE TABLE ${observatory_db_name}.result_deposited_funder_country COMPUTE STATISTICS;
+--ANALYZE TABLE ${observatory_db_name}.result_deposited_funder_country COMPUTE STATISTICS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml

@@ -317,15 +317,12 @@
     </action>
 
     <action name="Step16-createIndicatorsTables">
-        <shell xmlns="uri:oozie:shell-action:0.1">
+        <hive2 xmlns="uri:oozie:hive2-action:0.1">
-            <job-tracker>${jobTracker}</job-tracker>
+            <jdbc-url>${hive_jdbc_url}</jdbc-url>
-            <name-node>${nameNode}</name-node>
+            <script>scripts/step16-createIndicatorsTables.sql</script>
-            <exec>indicators.sh</exec>
+            <param>stats_db_name=${stats_db_name}</param>
-            <argument>${stats_db_name}</argument>
+            <param>external_stats_db_name=${external_stats_db_name}</param>
-            <argument>${external_stats_db_name}</argument>
+        </hive2>
-            <argument>${wf:appPath()}/scripts/step16-createIndicatorsTables.sql</argument>
-            <file>indicators.sh</file>
-        </shell>
         <ok to="Step16_1-definitions"/>
         <error to="Kill"/>
     </action>
@@ -378,6 +375,7 @@
             <argument>${wf:appPath()}/scripts/step20-createMonitorDB_institutions.sql</argument>
             <argument>${wf:appPath()}/scripts/step20-createMonitorDB_RIs.sql</argument>
             <argument>${wf:appPath()}/scripts/step20-createMonitorDB_RIs_tail.sql</argument>
+            <argument>${wf:appPath()}/scripts/step20-createMonitorDBAll.sql</argument>
             <file>monitor.sh</file>
         </shell>
         <ok to="step21-createObservatoryDB-pre"/>