lsmyrnaios
/
dnet-hadoop
forked from D-Net/dnet-hadoop
1
0
Fork 0
Code Pull Requests Activity

fixed conflict

This commit is contained in:
Sandro La Bruzzo 2019-10-24 17:05:42 +02:00
parent d2965636e0 79c4f1bbd8
commit 0902bac7dd
7 changed files with 128 additions and 45 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

22
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/DataInfo.java
View File

@ -10,54 +10,60 @@ public class DataInfo implements Serializable {
private Boolean deletedbyinference;
private String trust;
private String inferenceprovenance;
private List<Qualifier> provenanceaction;
private Qualifier provenanceaction;
public Boolean getInvisible() {
return invisible;
}
public void setInvisible(Boolean invisible) {
public DataInfo setInvisible(Boolean invisible) {
this.invisible = invisible;
return this;
}
public Boolean getInferred() {
return inferred;
}
public void setInferred(Boolean inferred) {
public DataInfo setInferred(Boolean inferred) {
this.inferred = inferred;
return this;
}
public Boolean getDeletedbyinference() {
return deletedbyinference;
}
public void setDeletedbyinference(Boolean deletedbyinference) {
public DataInfo setDeletedbyinference(Boolean deletedbyinference) {
this.deletedbyinference = deletedbyinference;
return this;
}
public String getTrust() {
return trust;
}
public void setTrust(String trust) {
public DataInfo setTrust(String trust) {
this.trust = trust;
return this;
}
public String getInferenceprovenance() {
return inferenceprovenance;
}
public void setInferenceprovenance(String inferenceprovenance) {
public DataInfo setInferenceprovenance(String inferenceprovenance) {
this.inferenceprovenance = inferenceprovenance;
return this;
}
public List<Qualifier> getProvenanceaction() {
public Qualifier getProvenanceaction() {
return provenanceaction;
}
public void setProvenanceaction(List<Qualifier> provenanceaction) {
public DataInfo setProvenanceaction(Qualifier provenanceaction) {
this.provenanceaction = provenanceaction;
return this;
}
}

9
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/KeyValue.java
View File

@ -14,23 +14,26 @@ public class KeyValue implements Serializable {
return key;
}
public void setKey(String key) {
public KeyValue setKey(String key) {
this.key = key;
return this;
}
public String getValue() {
return value;
}
public void setValue(String value) {
public KeyValue setValue(String value) {
this.value = value;
return this;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
public KeyValue setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
return this;
}
}

15
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Qualifier.java
View File

@ -15,39 +15,44 @@ public class Qualifier implements Serializable {
return classid;
}
public void setClassid(String classid) {
public Qualifier setClassid(String classid) {
this.classid = classid;
return this;
}
public String getClassname() {
return classname;
}
public void setClassname(String classname) {
public Qualifier setClassname(String classname) {
this.classname = classname;
return this;
}
public String getSchemeid() {
return schemeid;
}
public void setSchemeid(String schemeid) {
public Qualifier setSchemeid(String schemeid) {
this.schemeid = schemeid;
return this;
}
public String getSchemename() {
return schemename;
}
public void setSchemename(String schemename) {
public Qualifier setSchemename(String schemename) {
this.schemename = schemename;
return this;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
public Qualifier setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
return this;
}
}

18
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Relation.java
View File

@ -20,47 +20,53 @@ public class Relation extends Oaf {
return relType;
}
public void setRelType(String relType) {
public Relation setRelType(String relType) {
this.relType = relType;
return this;
}
public String getSubRelType() {
return subRelType;
}
public void setSubRelType(String subRelType) {
public Relation setSubRelType(String subRelType) {
this.subRelType = subRelType;
return this;
}
public String getRelClass() {
return relClass;
}
public void setRelClass(String relClass) {
public Relation setRelClass(String relClass) {
this.relClass = relClass;
return this;
}
public String getSource() {
return source;
}
public void setSource(String source) {
public Relation setSource(String source) {
this.source = source;
return this;
}
public String getTarget() {
return target;
}
public void setTarget(String target) {
public Relation setTarget(String target) {
this.target = target;
return this;
}
public List<KeyValue> getCollectedFrom() {
return collectedFrom;
}
public void setCollectedFrom(List<KeyValue> collectedFrom) {
public Relation setCollectedFrom(List<KeyValue> collectedFrom) {
this.collectedFrom = collectedFrom;
return this;
}
}

10
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/StructuredProperty.java
View File

@ -10,28 +10,30 @@ public class StructuredProperty implements Serializable {
private DataInfo dataInfo;
public String getValue() {
return value;
}
public void setValue(String value) {
public StructuredProperty setValue(String value) {
this.value = value;
return this;
}
public Qualifier getQualifier() {
return qualifier;
}
public void setQualifier(Qualifier qualifier) {
public StructuredProperty setQualifier(Qualifier qualifier) {
this.qualifier = qualifier;
return this;
}
public DataInfo getDataInfo() {
return dataInfo;
}
public void setDataInfo(DataInfo dataInfo) {
public StructuredProperty setDataInfo(DataInfo dataInfo) {
this.dataInfo = dataInfo;
return this;
}
}

46
dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/graph/ProtoConverter.java
View File

@ -1,7 +1,5 @@
package eu.dnetlib.dhp.graph;
import com.googlecode.protobuf.format.JsonFormat;
import eu.dnetlib.data.proto.KindProtos;
import eu.dnetlib.data.proto.OafProtos;
import eu.dnetlib.dhp.schema.oaf.*;
@ -9,30 +7,39 @@ import eu.dnetlib.dhp.schema.oaf.*;
import java.io.Serializable;
import java.util.stream.Collectors;
import static eu.dnetlib.dhp.graph.ProtoUtils.mapKV;
public class ProtoConverter implements Serializable {
public static Oaf convert(String s) {
try {
final OafProtos.Oaf.Builder builder = OafProtos.Oaf.newBuilder();
JsonFormat.merge(s, builder);
OafProtos.Oaf oaf = ProtoUtils.parse(s);
if (builder.getKind() == KindProtos.Kind.entity)
return convertEntity(builder);
if (oaf.getKind() == KindProtos.Kind.entity)
return convertEntity(oaf);
else {
return convertRelation(builder);
return convertRelation(oaf);
}
} catch (Throwable e) {
throw new RuntimeException(e);
}
}
private static Relation convertRelation(OafProtos.Oaf.Builder oaf) {
return new Relation();
private static Relation convertRelation(OafProtos.Oaf oaf) {
final Relation rel = new Relation();
final OafProtos.OafRel r = oaf.getRel();
return rel
.setSource(r.getSource())
.setTarget(r.getTarget())
.setRelType(r.getRelType().toString())
.setSubRelType(r.getSubRelType().toString())
.setRelClass(r.getRelClass())
.setCollectedFrom(r.getCollectedfromList().stream()
.map(kv -> mapKV(kv))
.collect(Collectors.toList()));
}
private static OafEntity convertEntity(OafProtos.Oaf.Builder oaf) {
private static OafEntity convertEntity(OafProtos.Oaf oaf) {
switch (oaf.getEntity().getType()) {
case result:
@ -48,11 +55,12 @@ public class ProtoConverter implements Serializable {
}
}
private static Organization convertOrganization(OafProtos.Oaf.Builder oaf) {
private static Organization convertOrganization(OafProtos.Oaf oaf) {
return new Organization();
}
private static Datasource convertDataSource(OafProtos.Oaf.Builder oaf) {
private static Datasource convertDataSource(OafProtos.Oaf oaf) {
final Datasource result = new Datasource();
//setting oaf field
@ -75,11 +83,11 @@ public class ProtoConverter implements Serializable {
return result;
}
private static Project convertProject(OafProtos.Oaf.Builder oaf) {
private static Project convertProject(OafProtos.Oaf oaf) {
return new Project();
}
private static Result convertResult(OafProtos.Oaf.Builder oaf) {
private static Result convertResult(OafProtos.Oaf oaf) {
switch (oaf.getEntity().getResult().getMetadata().getResulttype().getClassid()) {
case "dataset":
return createDataset(oaf);
@ -94,19 +102,19 @@ public class ProtoConverter implements Serializable {
}
}
private static Software createSoftware(OafProtos.Oaf.Builder oaf) {
private static Software createSoftware(OafProtos.Oaf oaf) {
return new Software();
}
private static OtherResearchProducts createORP(OafProtos.Oaf.Builder oaf) {
private static OtherResearchProducts createORP(OafProtos.Oaf oaf) {
return new OtherResearchProducts();
}
private static Publication createPublication(OafProtos.Oaf.Builder oaf) {
private static Publication createPublication(OafProtos.Oaf oaf) {
return new Publication();
}
private static Dataset createDataset(OafProtos.Oaf.Builder oaf) {
private static Dataset createDataset(OafProtos.Oaf oaf) {
return new Dataset();
}
}

53
dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/graph/ProtoUtils.java Normal file
View File

@ -0,0 +1,53 @@
package eu.dnetlib.dhp.graph;
import com.googlecode.protobuf.format.JsonFormat;
import eu.dnetlib.data.proto.FieldTypeProtos;
import eu.dnetlib.data.proto.OafProtos;
import eu.dnetlib.dhp.schema.oaf.DataInfo;
import eu.dnetlib.dhp.schema.oaf.KeyValue;
import eu.dnetlib.dhp.schema.oaf.Qualifier;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
import java.util.List;
public class ProtoUtils {
public static OafProtos.Oaf parse(String json) throws JsonFormat.ParseException {
final OafProtos.Oaf.Builder builder = OafProtos.Oaf.newBuilder();
JsonFormat.merge(json, builder);
return builder.build();
}
public static KeyValue mapKV(FieldTypeProtos.KeyValue kv) {
return new KeyValue()
.setKey(kv.getKey())
.setValue(kv.getValue())
.setDataInfo(mapDataInfo(kv.getDataInfo()));
}
public static DataInfo mapDataInfo(FieldTypeProtos.DataInfo d) {
return new DataInfo()
.setDeletedbyinference(d.getDeletedbyinference())
.setInferenceprovenance(d.getInferenceprovenance())
.setInferred(d.getInferred())
.setInvisible(d.getInvisible())
.setProvenanceaction(mapQualifier(d.getProvenanceaction()));
}
public static Qualifier mapQualifier(FieldTypeProtos.Qualifier q) {
return new Qualifier()
.setClassid(q.getClassid())
.setClassname(q.getClassname())
.setSchemeid(q.getSchemeid())
.setSchemename(q.getSchemename())
.setDataInfo(q.hasDataInfo() ? mapDataInfo(q.getDataInfo()) : null);
}
public static StructuredProperty mapStructuredProperty(FieldTypeProtos.StructuredProperty sp) {
return new StructuredProperty()
.setValue(sp.getValue())
.setQualifier(mapQualifier(sp.getQualifier()))
.setDataInfo(sp.hasDataInfo() ? mapDataInfo(sp.getDataInfo()) : null);
}
}