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code cleanup

This commit is contained in:
Antonis Lempesis 2024-03-21 12:44:30 +02:00
parent 67a5aa0a38
commit 07f634a46d
1 changed files with 43 additions and 184 deletions
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227
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql
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@ -58,7 +58,7 @@ select distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has
from ${stats_db_name}.result r from ${stats_db_name}.result r
left outer join (select r.id, license.type as lic from ${stats_db_name}.result r left outer join (select r.id, license.type as lic from ${stats_db_name}.result r
join ${stats_db_name}.result_licenses as license on license.id = r.id join ${stats_db_name}.result_licenses as license on license.id = r.id
where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc %') tmp
on r.id= tmp.id; /*EOS*/ on r.id= tmp.id; /*EOS*/
drop table if exists ${stats_db_name}.indi_result_has_cc_licence_url purge; /*EOS*/ drop table if exists ${stats_db_name}.indi_result_has_cc_licence_url purge; /*EOS*/
@ -130,7 +130,7 @@ from tmp as o1 join tmp as o2 on o1.id=o2.id
where o1.id=o2.id and o1.country!=o2.country where o1.id=o2.id and o1.country!=o2.country
group by o1.organization, o1.id, o1.name, o2.country; /*EOS*/ group by o1.organization, o1.id, o1.name, o2.country; /*EOS*/
drop table if exists tmp purge; /*EOS*/ DROP VIEW if exists tmp; /*EOS*/
create TEMPORARY VIEW tmp AS create TEMPORARY VIEW tmp AS
select o.id organization, o.name, ro.project as project from ${stats_db_name}.organization o select o.id organization, o.name, ro.project as project from ${stats_db_name}.organization o
@ -195,48 +195,40 @@ DROP VIEW if exists tmp; /*EOS*/
---- Sprint 4 ---- ---- Sprint 4 ----
drop table if exists ${stats_db_name}.indi_pub_diamond purge; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_diamond purge; /*EOS*/
--create table if not exists ${stats_db_name}.indi_pub_diamond stored as parquet as
--select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal
--from ${stats_db_name}.publication_datasources pd
-- left outer join (
-- select pd.id, 1 as in_diamond_journal from ${stats_db_name}.publication_datasources pd
-- join ${stats_db_name}.datasource d on d.id=pd.datasource
-- join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
-- and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp
-- on pd.id=tmp.id;
create table if not exists ${stats_db_name}.indi_pub_diamond stored as parquet as create table if not exists ${stats_db_name}.indi_pub_diamond stored as parquet as
select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal
from ${stats_db_name}.publication_datasources pd from ${stats_db_name}.publication_datasources pd
left outer join (select pd.id, 1 as in_diamond_journal from ${stats_db_name}.publication_datasources pd left outer join (
join ${stats_db_name}.datasource d on d.id=pd.datasource select pd.id, 1 as in_diamond_journal
join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) from ${stats_db_name}.publication_datasources pd
and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp join ${stats_db_name}.datasource d on d.id=pd.datasource
on pd.id=tmp.id; /*EOS*/ join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp on pd.id=tmp.id; /*EOS*/
drop table if exists ${stats_db_name}.indi_pub_in_transformative purge; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_in_transformative purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_in_transformative stored as parquet as create table if not exists ${stats_db_name}.indi_pub_in_transformative stored as parquet as
select distinct pd.id, coalesce(is_transformative, 0) as is_transformative select distinct pd.id, coalesce(is_transformative, 0) as is_transformative
from ${stats_db_name}.publication pd from ${stats_db_name}.publication pd
left outer join ( left outer join (
select pd.id, 1 as is_transformative from ${stats_db_name}.publication_datasources pd select pd.id, 1 as is_transformative
join ${stats_db_name}.datasource d on d.id=pd.datasource from ${stats_db_name}.publication_datasources pd
join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) join ${stats_db_name}.datasource d on d.id=pd.datasource
and ps.is_transformative_journal=true) tmp join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
on pd.id=tmp.id; /*EOS*/ and ps.is_transformative_journal=true) tmp on pd.id=tmp.id; /*EOS*/
drop table if exists ${stats_db_name}.indi_pub_closed_other_open purge; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_closed_other_open purge; /*EOS*/
create table if not exists ${stats_db_name}.indi_pub_closed_other_open stored as parquet as create table if not exists ${stats_db_name}.indi_pub_closed_other_open stored as parquet as
select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open from ${stats_db_name}.result_instance ri select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open
left outer join from ${stats_db_name}.result_instance ri
(select ri.id, 1 as pub_closed_other_open from ${stats_db_name}.result_instance ri left outer join (
join ${stats_db_name}.publication p on p.id=ri.id select ri.id, 1 as pub_closed_other_open
join ${stats_db_name}.datasource d on ri.hostedby=d.id from ${stats_db_name}.result_instance ri
where d.type like '%Journal%' and ri.accessright='Closed Access' and join ${stats_db_name}.publication p on p.id=ri.id
(p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp join ${stats_db_name}.datasource d on ri.hostedby=d.id
on tmp.id=ri.id; /*EOS*/ where d.type like '%Journal%' and ri.accessright='Closed Access' and
(p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp on tmp.id=ri.id; /*EOS*/
---- Sprint 5 ---- ---- Sprint 5 ----
drop table if exists ${stats_db_name}.indi_result_no_of_copies purge; /*EOS*/ drop table if exists ${stats_db_name}.indi_result_no_of_copies purge; /*EOS*/
@ -284,77 +276,6 @@ GROUP BY result_id, repository_id, substring(us.`date`, 1,4); /*EOS*/
---- Sprint 7 ---- ---- Sprint 7 ----
drop table if exists ${stats_db_name}.indi_pub_gold_oa purge; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_gold_oa purge; /*EOS*/
--create table if not exists ${stats_db_name}.indi_pub_gold_oa stored as parquet as
-- WITH gold_oa AS ( SELECT
-- issn_l,
-- journal_is_in_doaj,
-- journal_is_oa,
-- issn_1 as issn
-- FROM
-- STATS_EXT.oa_journals
-- WHERE
-- issn_1 != ""
-- UNION
-- ALL SELECT
-- issn_l,
-- journal_is_in_doaj,
-- journal_is_oa,
-- issn_2 as issn
-- FROM
-- STATS_EXT.oa_journals
-- WHERE
-- issn_2 != "" ), issn AS ( SELECT
-- *
-- FROM
--( SELECT
-- id,
-- issn_printed as issn
-- FROM
-- ${stats_db_name}.datasource
-- WHERE
-- issn_printed IS NOT NULL
-- UNION ALL
-- SELECT
-- id,
-- issn_online as issn
-- FROM
-- ${stats_db_name}.datasource
-- WHERE
-- issn_online IS NOT NULL or id like '%doajarticles%') as issn
-- WHERE
-- LENGTH(issn) > 7)
--SELECT
-- DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
--FROM
-- ${stats_db_name}.publication_datasources pd
-- left outer join(
-- select pd.id, 1 as is_gold FROM ${stats_db_name}.publication_datasources pd
-- JOIN issn on issn.id=pd.datasource
-- JOIN gold_oa on issn.issn = gold_oa.issn) tmp
-- on pd.id=tmp.id;
--create table if not exists ${stats_db_name}.indi_pub_gold_oa stored as parquet as
--with gold_oa as (
--SELECT issn,issn_l from stats_ext.issn_gold_oa_dataset_v5),
--issn AS (SELECT * FROM
--(SELECT id,issn_printed as issn FROM ${stats_db_name}.datasource
--WHERE issn_printed IS NOT NULL
--UNION ALL
--SELECT id, issn_online as issn FROM ${stats_db_name}.datasource
--WHERE issn_online IS NOT NULL or id like '%doajarticles%') as issn
--WHERE LENGTH(issn) > 7),
--alljournals AS(select issn, issn_l from stats_ext.alljournals
--where journal_is_in_doaj=true or journal_is_oa=true)
--SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
--FROM ${stats_db_name}.publication_datasources pd
--left outer join (
--select pd.id, 1 as is_gold FROM ${stats_db_name}.publication_datasources pd
--JOIN issn on issn.id=pd.datasource
--JOIN gold_oa on issn.issn = gold_oa.issn
--join alljournals on issn.issn=alljournals.issn
--left outer join ${stats_db_name}.result_instance ri on ri.id=pd.id
--and ri.accessright!='Closed Access' and ri.accessright_uw='gold') tmp
--on pd.id=tmp.id;
create table if not exists ${stats_db_name}.indi_pub_gold_oa stored as parquet as create table if not exists ${stats_db_name}.indi_pub_gold_oa stored as parquet as
with gold_oa as ( with gold_oa as (
select distinct issn from ( select distinct issn from (
@ -407,89 +328,25 @@ create table if not exists ${stats_db_name}.indi_pub_hybrid_oa_with_cc stored as
WHERE LENGTH(issn) > 7) WHERE LENGTH(issn) > 7)
SELECT DISTINCT pd.id, coalesce(is_hybrid_oa, 0) as is_hybrid_oa SELECT DISTINCT pd.id, coalesce(is_hybrid_oa, 0) as is_hybrid_oa
FROM ${stats_db_name}.publication_datasources pd FROM ${stats_db_name}.publication_datasources pd
LEFT OUTER JOIN ( LEFT OUTER JOIN (
SELECT pd.id, 1 as is_hybrid_oa from ${stats_db_name}.publication_datasources pd SELECT pd.id, 1 as is_hybrid_oa from ${stats_db_name}.publication_datasources pd
JOIN ${stats_db_name}.datasource d on d.id=pd.datasource JOIN ${stats_db_name}.datasource d on d.id=pd.datasource
JOIN issn on issn.id=pd.datasource JOIN issn on issn.id=pd.datasource
JOIN hybrid_oa ON issn.issn = hybrid_oa.issn JOIN hybrid_oa ON issn.issn = hybrid_oa.issn
JOIN ${stats_db_name}.indi_result_has_cc_licence cc on pd.id=cc.id JOIN ${stats_db_name}.indi_result_has_cc_licence cc on pd.id=cc.id
JOIN ${stats_db_name}.indi_pub_gold_oa ga on pd.id=ga.id JOIN ${stats_db_name}.indi_pub_gold_oa ga on pd.id=ga.id where cc.has_cc_license=1 and ga.is_gold=0) tmp on pd.id=tmp.id; /*EOS*/
where cc.has_cc_license=1 and ga.is_gold=0) tmp on pd.id=tmp.id; /*EOS*/
drop table if exists ${stats_db_name}.indi_pub_hybrid purge; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_hybrid purge; /*EOS*/
--create table if not exists ${stats_db_name}.indi_pub_hybrid stored as parquet as
-- WITH gold_oa AS ( SELECT
-- issn_l,
-- journal_is_in_doaj,
-- journal_is_oa,
-- issn_1 as issn,
-- has_apc
-- FROM
-- STATS_EXT.oa_journals
-- WHERE
-- issn_1 != ""
-- UNION
-- ALL SELECT
-- issn_l,
-- journal_is_in_doaj,
-- journal_is_oa,
-- issn_2 as issn,
-- has_apc
-- FROM
-- STATS_EXT.oa_journals
-- WHERE
-- issn_2 != "" ), issn AS ( SELECT
-- *
-- FROM
--( SELECT
-- id,
-- issn_printed as issn
-- FROM
-- ${stats_db_name}.datasource
-- WHERE
-- issn_printed IS NOT NULL
-- UNION ALL
-- SELECT
-- id,
-- issn_online as issn
-- FROM
-- ${stats_db_name}.datasource
-- WHERE
-- issn_online IS NOT NULL or id like '%doajarticles%') as issn
-- WHERE
-- LENGTH(issn) > 7)
--select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid
--from ${stats_db_name}.publication_datasources pd
-- left outer join (
-- select pd.id, 1 as is_hybrid from ${stats_db_name}.publication_datasources pd
-- join ${stats_db_name}.datasource d on d.id=pd.datasource
-- join issn on issn.id=pd.datasource
-- join gold_oa on issn.issn=gold_oa.issn
-- where (gold_oa.journal_is_in_doaj=false or gold_oa.journal_is_oa=false))tmp
-- on pd.id=tmp.id;
--create table if not exists ${stats_db_name}.indi_pub_hybrid stored as parquet as
--select distinct pd.id,coalesce(is_hybrid,0) is_hybrid from ${stats_db_name}.publication_datasources pd
--left outer join (select pd.id, 1 as is_hybrid from ${stats_db_name}.publication_datasources pd
--join ${stats_db_name}.datasource d on pd.datasource=d.id
--join ${stats_db_name}.result_instance ri on ri.id=pd.id
--join ${stats_db_name}.indi_pub_gold_oa indi_gold on indi_gold.id=pd.id
--join ${stats_db_name}.result_accessroute ra on ra.id=pd.id
--where d.type like '%Journal%' and ri.accessright!='Closed Access' and (ri.accessright_uw!='gold'
--or indi_gold.is_gold=0) and (ra.accessroute='hybrid' or ri.license is not null)) tmp
--on pd.id=tmp.id;
create table if not exists ${stats_db_name}.indi_pub_hybrid stored as parquet as create table if not exists ${stats_db_name}.indi_pub_hybrid stored as parquet as
select distinct pd.id,coalesce(is_hybrid,0) is_hybrid from ${stats_db_name}.publication pd select distinct pd.id,coalesce(is_hybrid,0) is_hybrid from ${stats_db_name}.publication pd
left outer join (select pd.id, 1 as is_hybrid from ${stats_db_name}.publication pd left outer join (
join ${stats_db_name}.result_instance ri on ri.id=pd.id select pd.id, 1 as is_hybrid from ${stats_db_name}.publication pd
join ${stats_db_name}.indi_pub_gold_oa indi_gold on indi_gold.id=pd.id join ${stats_db_name}.result_instance ri on ri.id=pd.id
join ${stats_db_name}.result_accessroute ra on ra.id=pd.id join ${stats_db_name}.indi_pub_gold_oa indi_gold on indi_gold.id=pd.id
join ${stats_db_name}.datasource d on d.id=ri.hostedby join ${stats_db_name}.result_accessroute ra on ra.id=pd.id
where indi_gold.is_gold=0 and ((d.type like '%Journal%' and ri.accessright!='Closed Access' and ri.accessright!='Restricted' and ri.license is not null) or join ${stats_db_name}.datasource d on d.id=ri.hostedby
ra.accessroute='hybrid'))tmp where indi_gold.is_gold=0 and ((d.type like '%Journal%' and ri.accessright!='Closed Access' and ri.accessright!='Restricted' and ri.license is not null) or ra.accessroute='hybrid')) tmp on pd.id=tmp.id; /*EOS*/
on pd.id=tmp.id; /*EOS*/
drop table if exists ${stats_db_name}.indi_org_fairness purge; /*EOS*/ drop table if exists ${stats_db_name}.indi_org_fairness purge; /*EOS*/
@ -534,6 +391,9 @@ select ar.organization, rf.no_result_fair/ar.no_allresults org_fairness
from allresults ar from allresults ar
join result_fair rf on rf.organization=ar.organization; /*EOS*/ join result_fair rf on rf.organization=ar.organization; /*EOS*/
DROP VIEW result_fair;
DROP VIEW allresults;
CREATE TEMPORARY VIEW result_fair as CREATE TEMPORARY VIEW result_fair as
select year, ro.organization organization, count(distinct ro.id) no_result_fair from ${stats_db_name}.result_organization ro select year, ro.organization organization, count(distinct ro.id) no_result_fair from ${stats_db_name}.result_organization ro
join ${stats_db_name}.result p on p.id=ro.id join ${stats_db_name}.result p on p.id=ro.id
@ -1201,11 +1061,10 @@ create table ${stats_db_name}.indi_pub_green_with_license stored as parquet as
select distinct p.id, coalesce(green_with_license, 0) as green_with_license select distinct p.id, coalesce(green_with_license, 0) as green_with_license
from ${stats_db_name}.publication p from ${stats_db_name}.publication p
left outer join ( left outer join (
select distinct p.id, 1 as green_with_license from ${stats_db_name}.publication p select distinct p.id, 1 as green_with_license from ${stats_db_name}.publication p
join ${stats_db_name}.result_instance ri on ri.id = p.id join ${stats_db_name}.result_instance ri on ri.id = p.id
join ${stats_db_name}.datasource on datasource.id = ri.hostedby join ${stats_db_name}.datasource on datasource.id = ri.hostedby
where ri.license is not null and datasource.type like '%Repository%' and datasource.name!='Other') tmp where ri.license is not null and datasource.type like '%Repository%' and datasource.name!='Other') tmp on p.id= tmp.id; /*EOS*/
on p.id= tmp.id; /*EOS*/
drop table if exists ${stats_db_name}.result_country purge; /*EOS*/ drop table if exists ${stats_db_name}.result_country purge; /*EOS*/