forked from D-Net/dnet-hadoop
[person] added test class to be implemented
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package eu.dnetlib.dhp.person;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import java.util.ArrayList;
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import java.util.List;
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import eu.dnetlib.dhp.schema.oaf.*;
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import org.apache.commons.io.FileUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.api.java.function.FlatMapFunction;
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.AfterAll;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.countrypropagation.SparkCountryPropagationJob;
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import scala.Tuple2;
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public class PersonPropagationJobTest {
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private static final Logger log = LoggerFactory.getLogger(PersonPropagationJobTest.class);
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static SparkSession spark;
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private static Path workingDir;
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files.createTempDirectory(PersonPropagationJobTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(PersonPropagationJobTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(PersonPropagationJobTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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void testPersonPropagation() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/personpropagation/graph")
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.getPath();
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SparkExtractPersonRelations
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.main(
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new String[] {
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"--isSparkSessionManaged", Boolean.FALSE.toString(),
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"--sourcePath", sourcePath,
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"--outputPath", workingDir.toString()
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Relation> tmp = sc
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.textFile(workingDir.toString() + "/relation")
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.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
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//TODO write assertions and find relevant information for hte resource files
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}
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}
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@ -0,0 +1 @@
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{"clazz":"eu.dnetlib.dhp.schema.oaf.Relation","payload":{"collectedfrom":[{"key":"10|openaire____::806360c771262b4d6770e7cdf04b5c5a","value":"ORCID","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.91","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:orcid","classname":"Imported from ORCID","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":null,"relType":"personPerson","subRelType":"coAuthorship","relClass":"hasCoAuthor","source":"30|orcid_______::028da52095190c6573d6bf9dba4c8ede","target":"30|orcid_______::8791a84ea413592878d6fe191f0ed35f","validated":true,"validationDate":null,"properties":[]}}
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