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[person] added test class to be implemented

This commit is contained in:
Miriam Baglioni 2024-10-24 15:27:06 +02:00
parent c773421cc7
commit 01679c935a
6 changed files with 96 additions and 0 deletions

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package eu.dnetlib.dhp.person;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.ArrayList;
import java.util.List;
import eu.dnetlib.dhp.schema.oaf.*;
import org.apache.commons.io.FileUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.api.java.function.FlatMapFunction;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SparkSession;
import org.junit.jupiter.api.AfterAll;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.Test;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.countrypropagation.SparkCountryPropagationJob;
import scala.Tuple2;
public class PersonPropagationJobTest {
private static final Logger log = LoggerFactory.getLogger(PersonPropagationJobTest.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static SparkSession spark;
private static Path workingDir;
@BeforeAll
public static void beforeAll() throws IOException {
workingDir = Files.createTempDirectory(PersonPropagationJobTest.class.getSimpleName());
log.info("using work dir {}", workingDir);
SparkConf conf = new SparkConf();
conf.setAppName(PersonPropagationJobTest.class.getSimpleName());
conf.setMaster("local[*]");
conf.set("spark.driver.host", "localhost");
conf.set("hive.metastore.local", "true");
conf.set("spark.ui.enabled", "false");
conf.set("spark.sql.warehouse.dir", workingDir.toString());
conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
spark = SparkSession
.builder()
.appName(PersonPropagationJobTest.class.getSimpleName())
.config(conf)
.getOrCreate();
}
@AfterAll
public static void afterAll() throws IOException {
FileUtils.deleteDirectory(workingDir.toFile());
spark.stop();
}
@Test
void testPersonPropagation() throws Exception {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/personpropagation/graph")
.getPath();
SparkExtractPersonRelations
.main(
new String[] {
"--isSparkSessionManaged", Boolean.FALSE.toString(),
"--sourcePath", sourcePath,
"--outputPath", workingDir.toString()
});
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<Relation> tmp = sc
.textFile(workingDir.toString() + "/relation")
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
//TODO write assertions and find relevant information for hte resource files
}
}

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{"clazz":"eu.dnetlib.dhp.schema.oaf.Relation","payload":{"collectedfrom":[{"key":"10|openaire____::806360c771262b4d6770e7cdf04b5c5a","value":"ORCID","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.91","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:orcid","classname":"Imported from ORCID","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":null,"relType":"personPerson","subRelType":"coAuthorship","relClass":"hasCoAuthor","source":"30|orcid_______::028da52095190c6573d6bf9dba4c8ede","target":"30|orcid_______::8791a84ea413592878d6fe191f0ed35f","validated":true,"validationDate":null,"properties":[]}}