forked from D-Net/dnet-hadoop
Removed Query community testing. Removed package from common related to the interaction with Zenodo since it was moved to the dump-project
This commit is contained in:
parent
5c5a195e97
commit
0097f4e64b
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@ -1,53 +0,0 @@
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package eu.dnetlib.dhp.common.api;
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import java.io.IOException;
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import java.io.InputStream;
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import okhttp3.MediaType;
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import okhttp3.RequestBody;
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import okhttp3.internal.Util;
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import okio.BufferedSink;
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import okio.Okio;
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import okio.Source;
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public class InputStreamRequestBody extends RequestBody {
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private final InputStream inputStream;
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private final MediaType mediaType;
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private final long lenght;
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public static RequestBody create(final MediaType mediaType, final InputStream inputStream, final long len) {
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return new InputStreamRequestBody(inputStream, mediaType, len);
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}
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private InputStreamRequestBody(InputStream inputStream, MediaType mediaType, long len) {
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this.inputStream = inputStream;
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this.mediaType = mediaType;
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this.lenght = len;
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}
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@Override
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public MediaType contentType() {
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return mediaType;
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}
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@Override
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public long contentLength() {
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return lenght;
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}
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@Override
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public void writeTo(BufferedSink sink) throws IOException {
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Source source = null;
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try {
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source = Okio.source(inputStream);
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sink.writeAll(source);
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} finally {
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Util.closeQuietly(source);
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}
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}
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}
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@ -1,8 +0,0 @@
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package eu.dnetlib.dhp.common.api;
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public class MissingConceptDoiException extends Throwable {
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public MissingConceptDoiException(String message) {
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super(message);
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}
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}
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@ -1,365 +0,0 @@
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package eu.dnetlib.dhp.common.api;
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import java.io.*;
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import java.io.IOException;
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import java.net.HttpURLConnection;
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import java.net.URL;
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import java.util.concurrent.TimeUnit;
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import org.apache.http.HttpHeaders;
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import org.apache.http.entity.ContentType;
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import org.jetbrains.annotations.NotNull;
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import com.google.gson.Gson;
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import eu.dnetlib.dhp.common.api.zenodo.ZenodoModel;
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import eu.dnetlib.dhp.common.api.zenodo.ZenodoModelList;
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import okhttp3.*;
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public class ZenodoAPIClient implements Serializable {
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String urlString;
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String bucket;
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String deposition_id;
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String access_token;
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public static final MediaType MEDIA_TYPE_JSON = MediaType.parse("application/json; charset=utf-8");
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private static final MediaType MEDIA_TYPE_ZIP = MediaType.parse("application/zip");
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public String getUrlString() {
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return urlString;
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}
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public void setUrlString(String urlString) {
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this.urlString = urlString;
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}
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public String getBucket() {
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return bucket;
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}
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public void setBucket(String bucket) {
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this.bucket = bucket;
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}
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public void setDeposition_id(String deposition_id) {
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this.deposition_id = deposition_id;
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}
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public ZenodoAPIClient(String urlString, String access_token) {
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this.urlString = urlString;
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this.access_token = access_token;
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}
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/**
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* Brand new deposition in Zenodo. It sets the deposition_id and the bucket where to store the files to upload
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*
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* @return response code
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* @throws IOException
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*/
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public int newDeposition() throws IOException {
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String json = "{}";
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URL url = new URL(urlString);
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HttpURLConnection conn = (HttpURLConnection) url.openConnection();
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conn.setRequestProperty(HttpHeaders.CONTENT_TYPE, ContentType.APPLICATION_JSON.toString());
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conn.setRequestProperty(HttpHeaders.AUTHORIZATION, "Bearer " + access_token);
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conn.setRequestMethod("POST");
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conn.setDoOutput(true);
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try (OutputStream os = conn.getOutputStream()) {
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byte[] input = json.getBytes("utf-8");
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os.write(input, 0, input.length);
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}
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String body = getBody(conn);
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int responseCode = conn.getResponseCode();
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conn.disconnect();
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if (!checkOKStatus(responseCode))
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throw new IOException("Unexpected code " + responseCode + body);
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ZenodoModel newSubmission = new Gson().fromJson(body, ZenodoModel.class);
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this.bucket = newSubmission.getLinks().getBucket();
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this.deposition_id = newSubmission.getId();
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return responseCode;
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}
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/**
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* Upload files in Zenodo.
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*
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* @param is the inputStream for the file to upload
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* @param file_name the name of the file as it will appear on Zenodo
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* @return the response code
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*/
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public int uploadIS(InputStream is, String file_name) throws IOException {
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URL url = new URL(bucket + "/" + file_name);
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HttpURLConnection conn = (HttpURLConnection) url.openConnection();
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conn.setRequestProperty(HttpHeaders.CONTENT_TYPE, "application/zip");
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conn.setRequestProperty(HttpHeaders.AUTHORIZATION, "Bearer " + access_token);
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conn.setDoOutput(true);
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conn.setRequestMethod("PUT");
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byte[] buf = new byte[8192];
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int length;
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try (OutputStream os = conn.getOutputStream()) {
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while ((length = is.read(buf)) != -1) {
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os.write(buf, 0, length);
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}
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}
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int responseCode = conn.getResponseCode();
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if (!checkOKStatus(responseCode)) {
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throw new IOException("Unexpected code " + responseCode + getBody(conn));
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}
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return responseCode;
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}
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@NotNull
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private String getBody(HttpURLConnection conn) throws IOException {
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String body = "{}";
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try (BufferedReader br = new BufferedReader(
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new InputStreamReader(conn.getInputStream(), "utf-8"))) {
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StringBuilder response = new StringBuilder();
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String responseLine = null;
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while ((responseLine = br.readLine()) != null) {
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response.append(responseLine.trim());
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}
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body = response.toString();
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}
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return body;
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}
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/**
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* Associates metadata information to the current deposition
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*
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* @param metadata the metadata
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* @return response code
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* @throws IOException
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*/
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public int sendMretadata(String metadata) throws IOException {
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URL url = new URL(urlString + "/" + deposition_id);
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HttpURLConnection conn = (HttpURLConnection) url.openConnection();
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conn.setRequestProperty(HttpHeaders.CONTENT_TYPE, ContentType.APPLICATION_JSON.toString());
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conn.setRequestProperty(HttpHeaders.AUTHORIZATION, "Bearer " + access_token);
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conn.setDoOutput(true);
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conn.setRequestMethod("PUT");
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try (OutputStream os = conn.getOutputStream()) {
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byte[] input = metadata.getBytes("utf-8");
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os.write(input, 0, input.length);
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}
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final int responseCode = conn.getResponseCode();
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conn.disconnect();
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if (!checkOKStatus(responseCode))
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throw new IOException("Unexpected code " + responseCode + getBody(conn));
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return responseCode;
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}
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private boolean checkOKStatus(int responseCode) {
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if (HttpURLConnection.HTTP_OK != responseCode ||
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HttpURLConnection.HTTP_CREATED != responseCode)
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return true;
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return false;
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}
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/**
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* To publish the current deposition. It works for both new deposition or new version of an old deposition
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*
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* @return response code
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* @throws IOException
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*/
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@Deprecated
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public int publish() throws IOException {
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String json = "{}";
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OkHttpClient httpClient = new OkHttpClient.Builder().connectTimeout(600, TimeUnit.SECONDS).build();
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RequestBody body = RequestBody.create(json, MEDIA_TYPE_JSON);
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Request request = new Request.Builder()
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.url(urlString + "/" + deposition_id + "/actions/publish")
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.addHeader("Authorization", "Bearer " + access_token)
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.post(body)
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.build();
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try (Response response = httpClient.newCall(request).execute()) {
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if (!response.isSuccessful())
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throw new IOException("Unexpected code " + response + response.body().string());
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return response.code();
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}
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}
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/**
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* To create a new version of an already published deposition. It sets the deposition_id and the bucket to be used
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* for the new version.
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*
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* @param concept_rec_id the concept record id of the deposition for which to create a new version. It is the last
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* part of the url for the DOI Zenodo suggests to use to cite all versions: DOI: 10.xxx/zenodo.656930
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* concept_rec_id = 656930
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* @return response code
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* @throws IOException
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* @throws MissingConceptDoiException
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*/
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public int newVersion(String concept_rec_id) throws IOException, MissingConceptDoiException {
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setDepositionId(concept_rec_id, 1);
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String json = "{}";
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URL url = new URL(urlString + "/" + deposition_id + "/actions/newversion");
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HttpURLConnection conn = (HttpURLConnection) url.openConnection();
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conn.setRequestProperty(HttpHeaders.AUTHORIZATION, "Bearer " + access_token);
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conn.setDoOutput(true);
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conn.setRequestMethod("POST");
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try (OutputStream os = conn.getOutputStream()) {
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byte[] input = json.getBytes("utf-8");
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os.write(input, 0, input.length);
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}
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String body = getBody(conn);
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int responseCode = conn.getResponseCode();
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conn.disconnect();
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if (!checkOKStatus(responseCode))
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throw new IOException("Unexpected code " + responseCode + body);
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ZenodoModel zenodoModel = new Gson().fromJson(body, ZenodoModel.class);
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String latest_draft = zenodoModel.getLinks().getLatest_draft();
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deposition_id = latest_draft.substring(latest_draft.lastIndexOf("/") + 1);
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bucket = getBucket(latest_draft);
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return responseCode;
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}
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/**
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* To finish uploading a version or new deposition not published
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* It sets the deposition_id and the bucket to be used
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*
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*
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* @param deposition_id the deposition id of the not yet published upload
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* concept_rec_id = 656930
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* @return response code
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* @throws IOException
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* @throws MissingConceptDoiException
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*/
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public int uploadOpenDeposition(String deposition_id) throws IOException, MissingConceptDoiException {
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this.deposition_id = deposition_id;
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String json = "{}";
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URL url = new URL(urlString + "/" + deposition_id);
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HttpURLConnection conn = (HttpURLConnection) url.openConnection();
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conn.setRequestProperty(HttpHeaders.AUTHORIZATION, "Bearer " + access_token);
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conn.setRequestMethod("POST");
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conn.setDoOutput(true);
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try (OutputStream os = conn.getOutputStream()) {
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byte[] input = json.getBytes("utf-8");
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os.write(input, 0, input.length);
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}
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String body = getBody(conn);
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int responseCode = conn.getResponseCode();
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conn.disconnect();
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if (!checkOKStatus(responseCode))
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throw new IOException("Unexpected code " + responseCode + body);
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ZenodoModel zenodoModel = new Gson().fromJson(body, ZenodoModel.class);
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bucket = zenodoModel.getLinks().getBucket();
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return responseCode;
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}
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private void setDepositionId(String concept_rec_id, Integer page) throws IOException, MissingConceptDoiException {
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ZenodoModelList zenodoModelList = new Gson()
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.fromJson(getPrevDepositions(String.valueOf(page)), ZenodoModelList.class);
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for (ZenodoModel zm : zenodoModelList) {
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if (zm.getConceptrecid().equals(concept_rec_id)) {
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deposition_id = zm.getId();
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return;
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}
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}
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if (zenodoModelList.size() == 0)
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throw new MissingConceptDoiException(
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"The concept record id specified was missing in the list of depositions");
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setDepositionId(concept_rec_id, page + 1);
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}
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private String getPrevDepositions(String page) throws IOException {
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HttpUrl.Builder urlBuilder = HttpUrl.parse(urlString).newBuilder();
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urlBuilder.addQueryParameter("page", page);
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URL url = new URL(urlBuilder.build().toString());
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HttpURLConnection conn = (HttpURLConnection) url.openConnection();
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conn.setRequestProperty(HttpHeaders.CONTENT_TYPE, ContentType.APPLICATION_JSON.toString());
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conn.setRequestProperty(HttpHeaders.AUTHORIZATION, "Bearer " + access_token);
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conn.setDoOutput(true);
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conn.setRequestMethod("GET");
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String body = getBody(conn);
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int responseCode = conn.getResponseCode();
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conn.disconnect();
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if (!checkOKStatus(responseCode))
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throw new IOException("Unexpected code " + responseCode + body);
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return body;
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}
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private String getBucket(String inputUurl) throws IOException {
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URL url = new URL(inputUurl);
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HttpURLConnection conn = (HttpURLConnection) url.openConnection();
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conn.setRequestProperty(HttpHeaders.CONTENT_TYPE, ContentType.APPLICATION_JSON.toString());
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conn.setRequestProperty(HttpHeaders.AUTHORIZATION, "Bearer " + access_token);
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conn.setDoOutput(true);
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conn.setRequestMethod("GET");
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String body = getBody(conn);
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int responseCode = conn.getResponseCode();
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conn.disconnect();
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if (!checkOKStatus(responseCode))
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throw new IOException("Unexpected code " + responseCode + body);
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ZenodoModel zenodoModel = new Gson().fromJson(body, ZenodoModel.class);
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return zenodoModel.getLinks().getBucket();
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}
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}
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@ -1,14 +0,0 @@
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package eu.dnetlib.dhp.common.api.zenodo;
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public class Community {
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private String identifier;
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public String getIdentifier() {
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return identifier;
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}
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public void setIdentifier(String identifier) {
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this.identifier = identifier;
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}
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}
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@ -1,47 +0,0 @@
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package eu.dnetlib.dhp.common.api.zenodo;
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public class Creator {
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private String affiliation;
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private String name;
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private String orcid;
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public String getAffiliation() {
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return affiliation;
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}
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public void setAffiliation(String affiliation) {
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this.affiliation = affiliation;
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}
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public String getName() {
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return name;
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}
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public void setName(String name) {
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this.name = name;
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}
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public String getOrcid() {
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return orcid;
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}
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public void setOrcid(String orcid) {
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this.orcid = orcid;
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}
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public static Creator newInstance(String name, String affiliation, String orcid) {
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Creator c = new Creator();
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if (name != null) {
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c.name = name;
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}
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if (affiliation != null) {
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c.affiliation = affiliation;
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}
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if (orcid != null) {
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c.orcid = orcid;
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}
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return c;
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}
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}
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@ -1,44 +0,0 @@
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package eu.dnetlib.dhp.common.api.zenodo;
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import java.io.Serializable;
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public class File implements Serializable {
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private String checksum;
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private String filename;
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private long filesize;
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private String id;
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public String getChecksum() {
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return checksum;
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}
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public void setChecksum(String checksum) {
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this.checksum = checksum;
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}
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public String getFilename() {
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return filename;
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}
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public void setFilename(String filename) {
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this.filename = filename;
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}
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public long getFilesize() {
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return filesize;
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}
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public void setFilesize(long filesize) {
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this.filesize = filesize;
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}
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public String getId() {
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return id;
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}
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public void setId(String id) {
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this.id = id;
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}
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}
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@ -1,23 +0,0 @@
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package eu.dnetlib.dhp.common.api.zenodo;
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|
||||
import java.io.Serializable;
|
||||
|
||||
public class Grant implements Serializable {
|
||||
private String id;
|
||||
|
||||
public String getId() {
|
||||
return id;
|
||||
}
|
||||
|
||||
public void setId(String id) {
|
||||
this.id = id;
|
||||
}
|
||||
|
||||
public static Grant newInstance(String id) {
|
||||
Grant g = new Grant();
|
||||
g.id = id;
|
||||
|
||||
return g;
|
||||
}
|
||||
}
|
||||
|
|
@ -1,92 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.common.api.zenodo;
|
||||
|
||||
import java.io.Serializable;
|
||||
|
||||
public class Links implements Serializable {
|
||||
|
||||
private String bucket;
|
||||
|
||||
private String discard;
|
||||
|
||||
private String edit;
|
||||
private String files;
|
||||
private String html;
|
||||
private String latest_draft;
|
||||
private String latest_draft_html;
|
||||
private String publish;
|
||||
|
||||
private String self;
|
||||
|
||||
public String getBucket() {
|
||||
return bucket;
|
||||
}
|
||||
|
||||
public void setBucket(String bucket) {
|
||||
this.bucket = bucket;
|
||||
}
|
||||
|
||||
public String getDiscard() {
|
||||
return discard;
|
||||
}
|
||||
|
||||
public void setDiscard(String discard) {
|
||||
this.discard = discard;
|
||||
}
|
||||
|
||||
public String getEdit() {
|
||||
return edit;
|
||||
}
|
||||
|
||||
public void setEdit(String edit) {
|
||||
this.edit = edit;
|
||||
}
|
||||
|
||||
public String getFiles() {
|
||||
return files;
|
||||
}
|
||||
|
||||
public void setFiles(String files) {
|
||||
this.files = files;
|
||||
}
|
||||
|
||||
public String getHtml() {
|
||||
return html;
|
||||
}
|
||||
|
||||
public void setHtml(String html) {
|
||||
this.html = html;
|
||||
}
|
||||
|
||||
public String getLatest_draft() {
|
||||
return latest_draft;
|
||||
}
|
||||
|
||||
public void setLatest_draft(String latest_draft) {
|
||||
this.latest_draft = latest_draft;
|
||||
}
|
||||
|
||||
public String getLatest_draft_html() {
|
||||
return latest_draft_html;
|
||||
}
|
||||
|
||||
public void setLatest_draft_html(String latest_draft_html) {
|
||||
this.latest_draft_html = latest_draft_html;
|
||||
}
|
||||
|
||||
public String getPublish() {
|
||||
return publish;
|
||||
}
|
||||
|
||||
public void setPublish(String publish) {
|
||||
this.publish = publish;
|
||||
}
|
||||
|
||||
public String getSelf() {
|
||||
return self;
|
||||
}
|
||||
|
||||
public void setSelf(String self) {
|
||||
this.self = self;
|
||||
}
|
||||
}
|
||||
|
|
@ -1,153 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.common.api.zenodo;
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.util.List;
|
||||
|
||||
public class Metadata implements Serializable {
|
||||
|
||||
private String access_right;
|
||||
private List<Community> communities;
|
||||
private List<Creator> creators;
|
||||
private String description;
|
||||
private String doi;
|
||||
private List<Grant> grants;
|
||||
private List<String> keywords;
|
||||
private String language;
|
||||
private String license;
|
||||
private PrereserveDoi prereserve_doi;
|
||||
private String publication_date;
|
||||
private List<String> references;
|
||||
private List<RelatedIdentifier> related_identifiers;
|
||||
private String title;
|
||||
private String upload_type;
|
||||
private String version;
|
||||
|
||||
public String getUpload_type() {
|
||||
return upload_type;
|
||||
}
|
||||
|
||||
public void setUpload_type(String upload_type) {
|
||||
this.upload_type = upload_type;
|
||||
}
|
||||
|
||||
public String getVersion() {
|
||||
return version;
|
||||
}
|
||||
|
||||
public void setVersion(String version) {
|
||||
this.version = version;
|
||||
}
|
||||
|
||||
public String getAccess_right() {
|
||||
return access_right;
|
||||
}
|
||||
|
||||
public void setAccess_right(String access_right) {
|
||||
this.access_right = access_right;
|
||||
}
|
||||
|
||||
public List<Community> getCommunities() {
|
||||
return communities;
|
||||
}
|
||||
|
||||
public void setCommunities(List<Community> communities) {
|
||||
this.communities = communities;
|
||||
}
|
||||
|
||||
public List<Creator> getCreators() {
|
||||
return creators;
|
||||
}
|
||||
|
||||
public void setCreators(List<Creator> creators) {
|
||||
this.creators = creators;
|
||||
}
|
||||
|
||||
public String getDescription() {
|
||||
return description;
|
||||
}
|
||||
|
||||
public void setDescription(String description) {
|
||||
this.description = description;
|
||||
}
|
||||
|
||||
public String getDoi() {
|
||||
return doi;
|
||||
}
|
||||
|
||||
public void setDoi(String doi) {
|
||||
this.doi = doi;
|
||||
}
|
||||
|
||||
public List<Grant> getGrants() {
|
||||
return grants;
|
||||
}
|
||||
|
||||
public void setGrants(List<Grant> grants) {
|
||||
this.grants = grants;
|
||||
}
|
||||
|
||||
public List<String> getKeywords() {
|
||||
return keywords;
|
||||
}
|
||||
|
||||
public void setKeywords(List<String> keywords) {
|
||||
this.keywords = keywords;
|
||||
}
|
||||
|
||||
public String getLanguage() {
|
||||
return language;
|
||||
}
|
||||
|
||||
public void setLanguage(String language) {
|
||||
this.language = language;
|
||||
}
|
||||
|
||||
public String getLicense() {
|
||||
return license;
|
||||
}
|
||||
|
||||
public void setLicense(String license) {
|
||||
this.license = license;
|
||||
}
|
||||
|
||||
public PrereserveDoi getPrereserve_doi() {
|
||||
return prereserve_doi;
|
||||
}
|
||||
|
||||
public void setPrereserve_doi(PrereserveDoi prereserve_doi) {
|
||||
this.prereserve_doi = prereserve_doi;
|
||||
}
|
||||
|
||||
public String getPublication_date() {
|
||||
return publication_date;
|
||||
}
|
||||
|
||||
public void setPublication_date(String publication_date) {
|
||||
this.publication_date = publication_date;
|
||||
}
|
||||
|
||||
public List<String> getReferences() {
|
||||
return references;
|
||||
}
|
||||
|
||||
public void setReferences(List<String> references) {
|
||||
this.references = references;
|
||||
}
|
||||
|
||||
public List<RelatedIdentifier> getRelated_identifiers() {
|
||||
return related_identifiers;
|
||||
}
|
||||
|
||||
public void setRelated_identifiers(List<RelatedIdentifier> related_identifiers) {
|
||||
this.related_identifiers = related_identifiers;
|
||||
}
|
||||
|
||||
public String getTitle() {
|
||||
return title;
|
||||
}
|
||||
|
||||
public void setTitle(String title) {
|
||||
this.title = title;
|
||||
}
|
||||
}
|
||||
|
|
@ -1,25 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.common.api.zenodo;
|
||||
|
||||
import java.io.Serializable;
|
||||
|
||||
public class PrereserveDoi implements Serializable {
|
||||
private String doi;
|
||||
private String recid;
|
||||
|
||||
public String getDoi() {
|
||||
return doi;
|
||||
}
|
||||
|
||||
public void setDoi(String doi) {
|
||||
this.doi = doi;
|
||||
}
|
||||
|
||||
public String getRecid() {
|
||||
return recid;
|
||||
}
|
||||
|
||||
public void setRecid(String recid) {
|
||||
this.recid = recid;
|
||||
}
|
||||
}
|
||||
|
|
@ -1,43 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.common.api.zenodo;
|
||||
|
||||
import java.io.Serializable;
|
||||
|
||||
public class RelatedIdentifier implements Serializable {
|
||||
private String identifier;
|
||||
private String relation;
|
||||
private String resource_type;
|
||||
private String scheme;
|
||||
|
||||
public String getIdentifier() {
|
||||
return identifier;
|
||||
}
|
||||
|
||||
public void setIdentifier(String identifier) {
|
||||
this.identifier = identifier;
|
||||
}
|
||||
|
||||
public String getRelation() {
|
||||
return relation;
|
||||
}
|
||||
|
||||
public void setRelation(String relation) {
|
||||
this.relation = relation;
|
||||
}
|
||||
|
||||
public String getResource_type() {
|
||||
return resource_type;
|
||||
}
|
||||
|
||||
public void setResource_type(String resource_type) {
|
||||
this.resource_type = resource_type;
|
||||
}
|
||||
|
||||
public String getScheme() {
|
||||
return scheme;
|
||||
}
|
||||
|
||||
public void setScheme(String scheme) {
|
||||
this.scheme = scheme;
|
||||
}
|
||||
}
|
||||
|
|
@ -1,118 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.common.api.zenodo;
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.util.List;
|
||||
|
||||
public class ZenodoModel implements Serializable {
|
||||
|
||||
private String conceptrecid;
|
||||
private String created;
|
||||
|
||||
private List<File> files;
|
||||
private String id;
|
||||
private Links links;
|
||||
private Metadata metadata;
|
||||
private String modified;
|
||||
private String owner;
|
||||
private String record_id;
|
||||
private String state;
|
||||
private boolean submitted;
|
||||
private String title;
|
||||
|
||||
public String getConceptrecid() {
|
||||
return conceptrecid;
|
||||
}
|
||||
|
||||
public void setConceptrecid(String conceptrecid) {
|
||||
this.conceptrecid = conceptrecid;
|
||||
}
|
||||
|
||||
public String getCreated() {
|
||||
return created;
|
||||
}
|
||||
|
||||
public void setCreated(String created) {
|
||||
this.created = created;
|
||||
}
|
||||
|
||||
public List<File> getFiles() {
|
||||
return files;
|
||||
}
|
||||
|
||||
public void setFiles(List<File> files) {
|
||||
this.files = files;
|
||||
}
|
||||
|
||||
public String getId() {
|
||||
return id;
|
||||
}
|
||||
|
||||
public void setId(String id) {
|
||||
this.id = id;
|
||||
}
|
||||
|
||||
public Links getLinks() {
|
||||
return links;
|
||||
}
|
||||
|
||||
public void setLinks(Links links) {
|
||||
this.links = links;
|
||||
}
|
||||
|
||||
public Metadata getMetadata() {
|
||||
return metadata;
|
||||
}
|
||||
|
||||
public void setMetadata(Metadata metadata) {
|
||||
this.metadata = metadata;
|
||||
}
|
||||
|
||||
public String getModified() {
|
||||
return modified;
|
||||
}
|
||||
|
||||
public void setModified(String modified) {
|
||||
this.modified = modified;
|
||||
}
|
||||
|
||||
public String getOwner() {
|
||||
return owner;
|
||||
}
|
||||
|
||||
public void setOwner(String owner) {
|
||||
this.owner = owner;
|
||||
}
|
||||
|
||||
public String getRecord_id() {
|
||||
return record_id;
|
||||
}
|
||||
|
||||
public void setRecord_id(String record_id) {
|
||||
this.record_id = record_id;
|
||||
}
|
||||
|
||||
public String getState() {
|
||||
return state;
|
||||
}
|
||||
|
||||
public void setState(String state) {
|
||||
this.state = state;
|
||||
}
|
||||
|
||||
public boolean isSubmitted() {
|
||||
return submitted;
|
||||
}
|
||||
|
||||
public void setSubmitted(boolean submitted) {
|
||||
this.submitted = submitted;
|
||||
}
|
||||
|
||||
public String getTitle() {
|
||||
return title;
|
||||
}
|
||||
|
||||
public void setTitle(String title) {
|
||||
this.title = title;
|
||||
}
|
||||
}
|
||||
|
|
@ -1,7 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.common.api.zenodo;
|
||||
|
||||
import java.util.ArrayList;
|
||||
|
||||
public class ZenodoModelList extends ArrayList<ZenodoModel> {
|
||||
}
|
||||
|
|
@ -1,128 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.common.api;
|
||||
|
||||
import java.io.File;
|
||||
import java.io.FileInputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.Disabled;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
@Disabled
|
||||
class ZenodoAPIClientTest {
|
||||
|
||||
private final String URL_STRING = "https://sandbox.zenodo.org/api/deposit/depositions";
|
||||
private final String ACCESS_TOKEN = "OzzOsyucEIHxCEfhlpsMo3myEiwpCza3trCRL7ddfGTAK9xXkIP2MbXd6Vg4";
|
||||
|
||||
private final String CONCEPT_REC_ID = "657113";
|
||||
|
||||
private final String depositionId = "674915";
|
||||
|
||||
@Test
|
||||
void testUploadOldDeposition() throws IOException, MissingConceptDoiException {
|
||||
ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING,
|
||||
ACCESS_TOKEN);
|
||||
Assertions.assertEquals(200, client.uploadOpenDeposition(depositionId));
|
||||
|
||||
File file = new File(getClass()
|
||||
.getResource("/eu/dnetlib/dhp/common/api/COVID-19.json.gz")
|
||||
.getPath());
|
||||
|
||||
InputStream is = new FileInputStream(file);
|
||||
|
||||
Assertions.assertEquals(200, client.uploadIS(is, "COVID-19.json.gz"));
|
||||
|
||||
String metadata = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/common/api/metadata.json"));
|
||||
|
||||
Assertions.assertEquals(200, client.sendMretadata(metadata));
|
||||
|
||||
Assertions.assertEquals(202, client.publish());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
void testNewDeposition() throws IOException {
|
||||
|
||||
ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING,
|
||||
ACCESS_TOKEN);
|
||||
Assertions.assertEquals(201, client.newDeposition());
|
||||
|
||||
File file = new File(getClass()
|
||||
.getResource("/eu/dnetlib/dhp/common/api/newVersion")
|
||||
.getPath());
|
||||
|
||||
InputStream is = new FileInputStream(file);
|
||||
|
||||
// Assertions.assertEquals(200, client.uploadIS(is, "COVID-19.json.gz"));
|
||||
|
||||
String metadata = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/common/api/metadata.json"));
|
||||
|
||||
Assertions.assertEquals(200, client.sendMretadata(metadata));
|
||||
|
||||
// Assertions.assertEquals(202, client.publish());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
void testNewVersionNewName() throws IOException, MissingConceptDoiException {
|
||||
|
||||
ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING,
|
||||
ACCESS_TOKEN);
|
||||
|
||||
Assertions.assertEquals(201, client.newVersion(CONCEPT_REC_ID));
|
||||
|
||||
File file = new File(getClass()
|
||||
.getResource("/eu/dnetlib/dhp/common/api/newVersion")
|
||||
.getPath());
|
||||
|
||||
InputStream is = new FileInputStream(file);
|
||||
|
||||
Assertions.assertEquals(200, client.uploadIS(is, "newVersion_deposition"));
|
||||
|
||||
Assertions.assertEquals(202, client.publish());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
void testNewVersionOldName() throws IOException, MissingConceptDoiException {
|
||||
|
||||
ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING,
|
||||
ACCESS_TOKEN);
|
||||
|
||||
Assertions.assertEquals(201, client.newVersion(CONCEPT_REC_ID));
|
||||
|
||||
File file = new File(getClass()
|
||||
.getResource("/eu/dnetlib/dhp/common/api/newVersion2")
|
||||
.getPath());
|
||||
|
||||
InputStream is = new FileInputStream(file);
|
||||
|
||||
Assertions.assertEquals(200, client.uploadIS(is, "newVersion_deposition"));
|
||||
|
||||
Assertions.assertEquals(202, client.publish());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
void depositBigFile() throws MissingConceptDoiException, IOException {
|
||||
ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING,
|
||||
ACCESS_TOKEN);
|
||||
|
||||
Assertions.assertEquals(201, client.newDeposition());
|
||||
|
||||
File file = new File("/Users/miriam.baglioni/Desktop/EOSC_DUMP/publication.tar");
|
||||
// File file = new File(getClass()
|
||||
// .getResource("/eu/dnetlib/dhp/common/api/newVersion2")
|
||||
// .getPath());
|
||||
|
||||
InputStream is = new FileInputStream(file);
|
||||
|
||||
Assertions.assertEquals(200, client.uploadIS(is, "newVersion_deposition"));
|
||||
|
||||
// Assertions.assertEquals(202, client.publish());
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -18,7 +18,6 @@ package eu.dnetlib.pace.util;
|
|||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
*/
|
||||
|
||||
/*
|
||||
* Diff Match and Patch
|
||||
* Copyright 2018 The diff-match-patch Authors.
|
||||
|
|
|
|||
|
|
@ -9,8 +9,6 @@ import java.util.Map;
|
|||
import java.util.Objects;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import javax.management.Query;
|
||||
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
|
|
@ -24,7 +22,6 @@ import eu.dnetlib.dhp.bulktag.community.CommunityConfiguration;
|
|||
import eu.dnetlib.dhp.bulktag.community.Provider;
|
||||
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
|
||||
import eu.dnetlib.dhp.bulktag.criteria.VerbResolverFactory;
|
||||
import eu.dnetlib.dhp.resulttocommunityfromorganization.SparkResultToCommunityFromOrganizationJob;
|
||||
|
||||
/**
|
||||
* @author miriam.baglioni
|
||||
|
|
|
|||
|
|
@ -1,115 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.api;
|
||||
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
import com.fasterxml.jackson.core.JsonProcessingException;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
|
||||
import eu.dnetlib.dhp.api.model.CommunityEntityMap;
|
||||
import eu.dnetlib.dhp.api.model.CommunityModel;
|
||||
import eu.dnetlib.dhp.api.model.CommunitySummary;
|
||||
import eu.dnetlib.dhp.api.model.DatasourceList;
|
||||
import eu.dnetlib.dhp.bulktag.community.Community;
|
||||
import eu.dnetlib.dhp.bulktag.community.CommunityConfiguration;
|
||||
|
||||
/**
|
||||
* @author miriam.baglioni
|
||||
* @Date 06/10/23
|
||||
*/
|
||||
public class QueryCommunityAPITest {
|
||||
|
||||
@Test
|
||||
void communityList() throws Exception {
|
||||
String body = QueryCommunityAPI.communities(true);
|
||||
new ObjectMapper()
|
||||
.readValue(body, CommunitySummary.class)
|
||||
.forEach(p -> {
|
||||
try {
|
||||
System.out.println(new ObjectMapper().writeValueAsString(p));
|
||||
} catch (JsonProcessingException e) {
|
||||
throw new RuntimeException(e);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
@Test
|
||||
void community() throws Exception {
|
||||
String id = "dh-ch";
|
||||
String body = QueryCommunityAPI.community(id, true);
|
||||
System.out
|
||||
.println(
|
||||
new ObjectMapper()
|
||||
.writeValueAsString(
|
||||
new ObjectMapper()
|
||||
.readValue(body, CommunityModel.class)));
|
||||
}
|
||||
|
||||
@Test
|
||||
void communityDatasource() throws Exception {
|
||||
String id = "dh-ch";
|
||||
String body = QueryCommunityAPI.communityDatasource(id, true);
|
||||
new ObjectMapper()
|
||||
.readValue(body, DatasourceList.class)
|
||||
.forEach(ds -> {
|
||||
try {
|
||||
System.out.println(new ObjectMapper().writeValueAsString(ds));
|
||||
} catch (JsonProcessingException e) {
|
||||
throw new RuntimeException(e);
|
||||
}
|
||||
});
|
||||
;
|
||||
}
|
||||
|
||||
@Test
|
||||
void validCommunities() throws Exception {
|
||||
CommunityConfiguration cc = Utils.getCommunityConfiguration(true);
|
||||
System.out.println(cc.getCommunities().keySet());
|
||||
Community community = cc.getCommunities().get("aurora");
|
||||
Assertions.assertEquals(0, community.getSubjects().size());
|
||||
Assertions.assertEquals(null, community.getConstraints());
|
||||
Assertions.assertEquals(null, community.getRemoveConstraints());
|
||||
Assertions.assertEquals(2, community.getZenodoCommunities().size());
|
||||
Assertions
|
||||
.assertTrue(
|
||||
community.getZenodoCommunities().stream().anyMatch(c -> c.equals("aurora-universities-network")));
|
||||
Assertions
|
||||
.assertTrue(community.getZenodoCommunities().stream().anyMatch(c -> c.equals("university-of-innsbruck")));
|
||||
Assertions.assertEquals(35, community.getProviders().size());
|
||||
Assertions
|
||||
.assertEquals(
|
||||
35, community.getProviders().stream().filter(p -> p.getSelectionConstraints() == null).count());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
void eutopiaCommunityConfiguration() throws Exception {
|
||||
CommunityConfiguration cc = Utils.getCommunityConfiguration(true);
|
||||
System.out.println(cc.getCommunities().keySet());
|
||||
Community community = cc.getCommunities().get("eutopia");
|
||||
community.getProviders().forEach(p -> System.out.println(p.getOpenaireId()));
|
||||
}
|
||||
|
||||
@Test
|
||||
void getCommunityProjects() throws Exception {
|
||||
CommunityEntityMap projectMap = Utils.getCommunityProjects(true);
|
||||
|
||||
Assertions
|
||||
.assertTrue(
|
||||
projectMap
|
||||
.keySet()
|
||||
.stream()
|
||||
.allMatch(k -> k.startsWith("40|")));
|
||||
|
||||
System.out.println(projectMap);
|
||||
}
|
||||
|
||||
@Test
|
||||
void getCommunityOrganizations() throws Exception {
|
||||
CommunityEntityMap organizationMap = Utils.getCommunityOrganization(true);
|
||||
Assertions.assertTrue(organizationMap.keySet().stream().allMatch(k -> k.startsWith("20|")));
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
Loading…
Reference in New Issue